Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold123G33400 Striga asiatica HOM05D003709 ORTHO05D004364 1.1e-96 356.7 182 100.0
SGA_v2.0_scaffold13G06687 Striga asiatica HOM05D003709 ORTHO05D004364 5.6e-29 131.7 72 86.1
Dinv31727 Davidia involucrata HOM05D003709 ORTHO05D004364 8.9e-27 124.4 70 82.9
Rhsim03G0069600 Rhododendron simsii HOM05D003709 ORTHO05D004364 2.0e-26 123.2 70 81.4
Hma1.2p1_0245F.1_g101590 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 2.6e-26 122.9 70 81.4
vmacro07432 Vaccinium macrocarpon HOM05D003709 ORTHO05D004364 4.4e-26 122.1 70 80.0
PGR004G2656 Punica granatum HOM05D003709 ORTHO05D004364 1.3e-25 120.6 68 80.9
Hma1.2p1_1724F.1_g299425 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 1.7e-25 120.2 66 84.8
Lj1C125T5 Lonicera japonica HOM05D003709 ORTHO05D004364 2.9e-25 119.4 70 81.4
Manes.08G029100 Manihot esculenta HOM05D003709 ORTHO05D004364 3.8e-25 119.0 72 76.4
Cc06_g06250 Coffea canephora HOM05D003709 ORTHO05D004364 4.9e-25 118.6 65 83.1
Sopen10g032700 Solanum pennellii HOM05D003709 ORTHO05D004364 6.4e-25 118.2 70 80.0
PGSC0003DMG400028247 Solanum tuberosum HOM05D003709 ORTHO05D004364 6.4e-25 118.2 70 80.0
GSVIVG01033901001 Vitis vinifera HOM05D003709 ORTHO05D004364 6.4e-25 118.2 70 78.6
DCAR_020733 Daucus carota HOM05D003709 ORTHO05D004364 1.1e-24 117.5 66 83.3
RcHm_v2.0_Chr6g0269071 Rosa chinensis HOM05D003709 ORTHO05D004364 1.1e-24 117.5 70 78.6
Duzib093G0911 Durio zibethinus HOM05D003709 ORTHO05D004364 1.4e-24 117.1 68 80.9
Gohir.D09G133000 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.4e-24 117.1 68 79.4
Gorai.006G152500 Gossypium raimondii HOM05D003709 ORTHO05D004364 1.4e-24 117.1 68 79.4
ECA247G0210 Erigeron canadensis HOM05D003709 ORTHO05D004364 1.9e-24 116.7 70 75.7
Lsat_1_v5_gn_9_14520 Lactuca sativa HOM05D003709 ORTHO05D004364 1.9e-24 116.7 70 77.1
Oeu007203.1 Olea europaea HOM05D003709 ORTHO05D004364 1.9e-24 116.7 70 81.4
FvH4_2g10910 Fragaria vesca HOM05D003709 ORTHO05D004364 2.4e-24 116.3 70 77.1
FAN20G0151 Fragaria x ananassa HOM05D003709 ORTHO05D004364 2.4e-24 116.3 70 77.1
Eucgr.A02626 Eucalyptus grandis HOM05D003709 ORTHO05D004364 3.2e-24 115.9 63 84.1
CiPaw.10G014600 Carya illinoinensis HOM05D003709 ORTHO05D004364 4.2e-24 115.5 68 77.9
ClCG03G000710 Citrullus lanatus HOM05D003709 ORTHO05D004364 4.2e-24 115.5 71 77.5
THA.LOC104803461 Tarenaya hassleriana HOM05D003709 ORTHO05D004364 4.2e-24 115.5 74 73.0
THA.LOC104826817 Tarenaya hassleriana HOM05D003709 ORTHO05D004364 4.2e-24 115.5 74 73.0
FAN15G3210 Fragaria x ananassa HOM05D003709 ORTHO05D004364 5.4e-24 115.2 70 75.7
FAN27G1255 Fragaria x ananassa HOM05D003709 ORTHO05D004364 5.4e-24 115.2 70 75.7
TWI77G0334 Tripterygium wilfordii HOM05D003709 ORTHO05D004364 7.1e-24 114.8 70 72.9
COL.COLO4_29662 Corchorus olitorius HOM05D003709 ORTHO05D004364 9.3e-24 114.4 68 76.5
Gohir.A09G141700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 9.3e-24 114.4 68 77.9
HanXRQChr04g0114081 Helianthus annuus HOM05D003709 ORTHO05D004364 9.3e-24 114.4 69 78.3
Sc20g0006470 Simmondsia chinensis HOM05D003709 ORTHO05D004364 9.3e-24 114.4 72 72.2
Actinidia12698 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.2e-23 114.0 69 76.8
Actinidia18412 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.2e-23 114.0 69 76.8
Actinidia27230 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.2e-23 114.0 69 76.8
Actinidia28628 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.2e-23 114.0 69 76.8
Actinidia37294 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.2e-23 114.0 69 76.8
MSTRG.5871 Avicennia marina HOM05D003709 ORTHO05D004364 1.6e-23 113.6 71 73.2
Cpa.g.c29173.2 Carica papaya HOM05D003709 ORTHO05D004364 1.6e-23 113.6 70 75.7
QL07p038048 Quercus lobata HOM05D003709 ORTHO05D004364 1.6e-23 113.6 71 74.6
CANSAT64G1889 Cannabis sativa HOM05D003709 ORTHO05D004364 2.1e-23 113.2 69 76.8
FAN24G0281 Fragaria x ananassa HOM05D003709 ORTHO05D004364 2.1e-23 113.2 70 75.7
Nitab4.5_0001801g0070 Nicotiana tabacum HOM05D003709 ORTHO05D004364 2.1e-23 113.2 70 78.6
Thecc.05G096700 Theobroma cacao HOM05D003709 ORTHO05D004364 2.1e-23 113.2 68 77.9
EL10Ac7g16841 Beta vulgaris HOM05D003709 ORTHO05D004364 3.5e-23 112.5 66 80.3
EL10Ac7g16842 Beta vulgaris HOM05D003709 ORTHO05D004364 3.5e-23 112.5 66 80.3
Haze_19671 Corylus avellana HOM05D003709 ORTHO05D004364 3.5e-23 112.5 60 86.7
Solyc10g083220.3 Solanum lycopersicum HOM05D003709 ORTHO05D004364 4.6e-23 112.1 66 80.3
Migut.J00663 Erythranthe guttata HOM05D003709 ORTHO05D004364 6.0e-23 111.7 72 75.0
Nn6g34801 Nelumbo nucifera HOM05D003709 ORTHO05D004364 6.0e-23 111.7 67 76.1
Prupe.8G077900 Prunus persica HOM05D003709 ORTHO05D004364 6.0e-23 111.7 63 85.7
Actinidia05396 Actinidia chinensis HOM05D003709 ORTHO05D004364 7.8e-23 111.3 70 71.4
MD05G1051100 Malus domestica HOM05D003709 ORTHO05D004364 7.8e-23 111.3 68 79.4
Aqoxy4G02712 Aquilegia oxysepala HOM05D003709 ORTHO05D004364 1.0e-22 110.9 68 76.5
CAN.G841.14 Capsicum annuum HOM05D003709 ORTHO05D004364 1.0e-22 110.9 70 75.7
PSO357G0160 Papaver somniferum HOM05D003709 ORTHO05D004364 1.0e-22 110.9 66 75.8
CSS0033506 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 1.3e-22 110.5 70 72.9
CSS0048031 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 1.3e-22 110.5 70 72.9
Gohir.A04G147400 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.3e-22 110.5 68 75.0
Sed0021250 Sechium edule HOM05D003709 ORTHO05D004364 1.3e-22 110.5 70 75.7
CSS0019397 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 1.7e-22 110.2 70 72.9
HanXRQChr08g0228531 Helianthus annuus HOM05D003709 ORTHO05D004364 2.3e-22 109.8 70 75.7
MBI17_g01496_MAGBIO Magnolia biondii HOM05D003709 ORTHO05D004364 3.0e-22 109.4 63 79.4
Peaxi162Scf00096g00098 Petunia axillaris HOM05D003709 ORTHO05D004364 3.9e-22 109.0 70 74.3
MELO3C009499.2 Cucumis melo HOM05D003709 ORTHO05D004364 5.1e-22 108.6 71 73.2
CsaV3_3G037560 Cucumis sativus L. HOM05D003709 ORTHO05D004364 1.1e-21 107.5 71 76.1
Gohir.1Z049623 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.5e-21 107.1 58 82.8
Gohir.1Z049729 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.5e-21 107.1 64 76.6
Gohir.D04G000040 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.5e-21 107.1 64 76.6
Gorai.012G000500 Gossypium raimondii HOM05D003709 ORTHO05D004364 1.5e-21 107.1 64 76.6
CDE04G0652 Ceratophyllum demersum HOM05D003709 ORTHO05D004364 3.3e-21 105.9 60 78.3
HPP92_028584 Vanilla planifolia HOM05D003709 ORTHO05D004364 4.3e-21 105.5 66 68.2
Gohir.D11G326500 Gossypium hirsutum HOM05D003709 ORTHO05D004364 5.6e-21 105.1 68 72.1
Gorai.007G357100 Gossypium raimondii HOM05D003709 ORTHO05D004364 5.6e-21 105.1 68 72.1
MD10G1058500 Malus domestica HOM05D003709 ORTHO05D004364 5.6e-21 105.1 68 76.5
Ciclev10013818m.g Citrus clementina HOM05D003709 ORTHO05D004364 7.3e-21 104.8 59 79.7
Sp6g36640 Schrenkiella parvula HOM05D003709 ORTHO05D004364 7.3e-21 104.8 63 76.2
AL6G16240 Arabidopsis lyrata HOM05D003709 ORTHO05D004364 9.6e-21 104.4 63 74.6
AT5G06240 Arabidopsis thaliana HOM05D003709 ORTHO05D004364 9.6e-21 104.4 63 74.6
BcaC06g32330 Brassica carinata HOM05D003709 ORTHO05D004364 9.6e-21 104.4 63 74.6
BcaC06g32333 Brassica carinata HOM05D003709 ORTHO05D004364 9.6e-21 104.4 63 74.6
A10p30240 Brassica napus HOM05D003709 ORTHO05D004364 9.6e-21 104.4 63 74.6
C09p70650 Brassica napus HOM05D003709 ORTHO05D004364 9.6e-21 104.4 63 74.6
BolC9t59821H Brassica oleracea HOM05D003709 ORTHO05D004364 9.6e-21 104.4 63 74.6
BraA10t45062Z Brassica rapa HOM05D003709 ORTHO05D004364 9.6e-21 104.4 63 74.6
Carub.0006s0511 Capsella rubella HOM05D003709 ORTHO05D004364 9.6e-21 104.4 63 74.6
CARHR206940 Cardamine hirsuta HOM05D003709 ORTHO05D004364 9.6e-21 104.4 63 74.6
PSO339G2742 Papaver somniferum HOM05D003709 ORTHO05D004364 9.6e-21 104.4 67 71.6
Thhalv10014881m.g Eutrema salsugineum HOM05D003709 ORTHO05D004364 1.6e-20 103.6 63 74.6
Gorai.007G188700 Gossypium raimondii HOM05D003709 ORTHO05D004364 2.1e-20 103.2 74 67.6
BcaB01g05734 Brassica carinata HOM05D003709 ORTHO05D004364 2.8e-20 102.8 63 73.0
A03p02630 Brassica napus HOM05D003709 ORTHO05D004364 2.8e-20 102.8 63 73.0
BraA03t09624Z Brassica rapa HOM05D003709 ORTHO05D004364 2.8e-20 102.8 63 73.0
Aa31sc52G10 Aethionema arabicum HOM05D003709 ORTHO05D004364 3.6e-20 102.4 76 64.5
Glyma.19G196500 Glycine max HOM05D003709 ORTHO05D004364 3.6e-20 102.4 68 69.1
Ciclev10012932m.g Citrus clementina HOM05D003709 ORTHO05D004364 4.8e-20 102.1 59 76.3
Gohir.A12G001133 Gossypium hirsutum HOM05D003709 ORTHO05D004364 6.2e-20 101.7 68 70.6
Gorai.002G197000 Gossypium raimondii HOM05D003709 ORTHO05D004364 6.2e-20 101.7 68 69.1
Nitab4.5_0005187g0010 Nicotiana tabacum HOM05D003709 ORTHO05D004364 6.2e-20 101.7 59 83.1
BcaB01g05985 Brassica carinata HOM05D003709 ORTHO05D004364 8.1e-20 101.3 63 73.0
Gohir.A13G235900 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.4e-19 100.5 68 70.6
Zm00001eb266720 Zea mays HOM05D003709 ORTHO05D004364 1.8e-19 100.1 72 62.5
Atru.chr8.1435 Acer truncatum HOM05D003709 ORTHO05D004364 2.4e-19 99.8 66 75.8
Glyma.03G198800 Glycine max HOM05D003709 ORTHO05D004364 4.0e-19 99.0 68 66.2
Gohir.D04G000065 Gossypium hirsutum HOM05D003709 ORTHO05D004364 4.0e-19 99.0 74 66.2
ClCG10G018670 Citrullus lanatus HOM05D003709 ORTHO05D004364 5.3e-19 98.6 55 81.8
MD13G1200900 Malus domestica HOM05D003709 ORTHO05D004364 5.3e-19 98.6 68 69.1
Os05g0112750 Oryza sativa ssp. japonica HOM05D003709 ORTHO05D004364 5.3e-19 98.6 72 65.3
Lalb_Chr20g0111541 Lupinus albus HOM05D003709 ORTHO05D004364 6.9e-19 98.2 68 69.1
Lalb_Chr25g0288201 Lupinus albus HOM05D003709 ORTHO05D004364 6.9e-19 98.2 61 72.1
MD07G1268900 Malus domestica HOM05D003709 ORTHO05D004364 3.4e-18 95.9 68 70.6
TPR.G23331 Trifolium pratense HOM05D003709 ORTHO05D004364 3.4e-18 95.9 70 64.3
Phvul.001G193000 Phaseolus vulgaris HOM05D003709 ORTHO05D004364 4.5e-18 95.5 62 67.7
VMungo1383G1751 Vigna mungo HOM05D003709 ORTHO05D004364 4.5e-18 95.5 72 66.7
Medtr7g105350 Medicago truncatula HOM05D003709 ORTHO05D004364 5.8e-18 95.1 68 67.6
Psat3g030960 Pisum sativum HOM05D003709 ORTHO05D004364 5.8e-18 95.1 62 67.7
Gohir.A12G074200 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.7e-17 93.6 55 78.2
Gohir.D11G176500 Gossypium hirsutum HOM05D003709 ORTHO05D004364 3.8e-17 92.4 49 85.7
arahy.Tifrunner.gnm1.ann1.K65CIQ Arachis hypogaea HOM05D003709 ORTHO05D004364 4.9e-17 92.0 72 63.9
arahy.Tifrunner.gnm1.ann1.VRIY4R Arachis hypogaea HOM05D003709 ORTHO05D004364 4.9e-17 92.0 72 63.9
Ca_09030_v3 Cicer arietinum L. HOM05D003709 ORTHO05D004364 6.4e-17 91.7 58 70.7
Lj2g0024912 Lotus japonicus HOM05D003709 ORTHO05D004364 6.4e-17 91.7 68 64.7
Potri.016G074700 Populus trichocarpa HOM05D003709 ORTHO05D004364 1.9e-16 90.1 57 66.7
Sabra16G0077300 Salix brachista HOM05D003709 ORTHO05D004364 1.9e-16 90.1 68 57.4
Sabra16G0080200 Salix brachista HOM05D003709 ORTHO05D004364 1.9e-16 90.1 68 57.4
ATR0315G087 Amborella trichopoda HOM05D003709 ORTHO05D004364 4.2e-16 89.0 59 69.5
Sabra06G0074500 Salix brachista HOM05D003709 ORTHO05D004364 4.2e-16 89.0 68 57.4
unitig_744.g24704 Utricularia gibba HOM05D003709 ORTHO05D004364 4.2e-16 89.0 68 64.7
Ah.15g090600 Amaranthus hybridus HOM05D003709 ORTHO05D004364 1.5e-13 80.5 94 51.1
Gohir.D12G071401 Gossypium hirsutum HOM05D003709 ORTHO05D004364 3.3e-13 79.3 88 54.5
Gorai.008G079100 Gossypium raimondii HOM05D003709 ORTHO05D004364 3.6e-12 75.9 75 54.7
Gohir.D01G158750 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.8e-11 73.6 59 57.6
Haze_19660 Corylus avellana HOM05D003709 ORTHO05D004364 1.5e-10 70.5 42 78.6
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.5e-10 70.5 45 75.6
Dinv21156 Davidia involucrata HOM05D003709 ORTHO05D004364 4.5e-10 68.9 42 76.2
Gohir.A05G416501 Gossypium hirsutum HOM05D001765 ORTHO05D003527 7.6e-10 68.2 45 71.1
Hund28303 Selenicereus undatus HOM05D003709 ORTHO05D004364 9.9e-10 67.8 38 78.9
Gorai.004G000400 Gossypium raimondii HOM05D003709 ORTHO05D004364 1.3e-09 67.4 40 77.5
Gohir.A05G416901 Gossypium hirsutum HOM05D001765 ORTHO05D003527 1.7e-09 67.0 43 72.1
AUR62028484 Chenopodium quinoa HOM05D003709 ORTHO05D138253 2.2e-09 66.6 36 91.7
AUR62028485 Chenopodium quinoa HOM05D003709 ORTHO05D004364 2.2e-09 66.6 36 91.7
AUR62028486 Chenopodium quinoa HOM05D003709 ORTHO05D004364 2.2e-09 66.6 36 91.7
AUR62006246 Chenopodium quinoa HOM05D003709 ORTHO05D004364 3.8e-09 65.9 35 94.3
Haze_00443 Corylus avellana HOM05D000273 ORTHO05D000198 1.1e-08 64.3 35 82.9
Gohir.A13G149700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.1e-08 64.3 48 62.5
Haze_10129 Corylus avellana HOM05D003709 ORTHO05D004364 2.4e-08 63.2 35 82.9
Hund28305 Selenicereus undatus HOM05D003709 ORTHO05D004364 3.2e-08 62.8 32 84.4
Haze_09934 Corylus avellana HOM05D003709 ORTHO05D004364 4.2e-08 62.4 33 84.8
Hma1.2p1_2017F.1_g311180 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 7.1e-08 61.6 33 81.8
Aa31LG11G7240 Aethionema arabicum HOM05D003709 ORTHO05D004364 2.7e-07 59.7 48 62.5
Gohir.A01G177700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 6.0e-07 58.5 40 67.5
Gohir.A10G101550 Gossypium hirsutum HOM05D003709 ORTHO05D004364 6.0e-07 58.5 40 67.5
arahy.Tifrunner.gnm1.ann1.PZI97L Arachis hypogaea HOM05D003709 ORTHO05D004364 5.1e-06 55.5 35 71.4
TAR636G0224 Trochodendron aralioides HOM05D003709 ORTHO05D004364 8.7e-06 54.7 38 63.2


User provided reference genes

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