Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold122G33347 Striga asiatica HOM05D006176 ORTHO05D007346 3.1e-66 255.0 130 100.0
Migut.I01087 Erythranthe guttata HOM05D006176 ORTHO05D007346 2.3e-29 132.5 137 59.1
Duzib192G0929 Durio zibethinus HOM05D006176 ORTHO05D007346 2.1e-25 119.4 133 50.4
Nitab4.5_0010678g0020 Nicotiana tabacum HOM05D006176 ORTHO05D007346 1.3e-24 116.7 124 50.0
Migut.D00934 Erythranthe guttata HOM05D006176 ORTHO05D007346 1.9e-23 112.8 119 55.5
Cfa003523 Carpinus fangiana HOM05D006176 ORTHO05D007346 2.5e-23 112.5 114 50.9
Thecc.06G122200 Theobroma cacao HOM05D006176 ORTHO05D007346 3.3e-23 112.1 124 48.4
Manes.04G145900 Manihot esculenta HOM05D006176 ORTHO05D007346 4.3e-23 111.7 115 47.8
Ah.08g216920 Amaranthus hybridus HOM05D006176 ORTHO05D007346 5.6e-23 111.3 130 46.9
Atru.chr1.4021 Acer truncatum HOM05D006176 ORTHO05D007346 6.2e-22 107.8 113 52.2
Gohir.A05G139800 Gossypium hirsutum HOM05D006176 ORTHO05D007346 6.2e-22 107.8 127 45.7
Haze_16045 Corylus avellana HOM05D006176 ORTHO05D007346 1.1e-21 107.1 109 49.5
COL.COLO4_30741 Corchorus olitorius HOM05D006176 ORTHO05D007346 1.8e-21 106.3 125 46.4
Gohir.D05G142000 Gossypium hirsutum HOM05D006176 ORTHO05D007346 2.4e-21 105.9 140 42.9
Gorai.009G146100 Gossypium raimondii HOM05D006176 ORTHO05D007346 2.4e-21 105.9 140 42.9
Nitab4.5_0000255g0320 Nicotiana tabacum HOM05D006176 ORTHO05D007346 2.4e-21 105.9 124 48.4
Oeu043644.1 Olea europaea HOM05D006176 ORTHO05D007346 4.0e-21 105.1 122 47.5
Atru.chr1.4004 Acer truncatum HOM05D006176 ORTHO05D007346 2.0e-20 102.8 113 50.4
EL10Ac7g16423 Beta vulgaris HOM05D006176 ORTHO05D007346 4.4e-20 101.7 121 43.8
CiPaw.01G217500 Carya illinoinensis HOM05D006176 ORTHO05D007346 2.9e-19 99.0 119 46.2
Dinv37860 Davidia involucrata HOM05D006176 ORTHO05D007346 3.8e-19 98.6 110 51.8
Gohir.A10G054700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 3.8e-19 98.6 117 45.3
Gohir.D10G056700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 3.8e-19 98.6 117 45.3
Oeu000400.1 Olea europaea HOM05D006176 ORTHO05D007346 6.4e-19 97.8 121 50.4
Gorai.011G060500 Gossypium raimondii HOM05D006176 ORTHO05D007346 8.4e-19 97.4 117 44.4
Actinidia26022 Actinidia chinensis HOM05D006176 ORTHO05D007346 1.4e-18 96.7 109 48.6
RcHm_v2.0_Chr2g0146001 Rosa chinensis HOM05D006176 ORTHO05D007346 1.4e-18 96.7 115 47.8
PGSC0003DMG400004890 Solanum tuberosum HOM05D006176 ORTHO05D007346 1.4e-18 96.7 111 49.5
FAN05G0172 Fragaria x ananassa HOM05D006176 ORTHO05D007346 1.9e-18 96.3 97 52.6
TWI75G0921 Tripterygium wilfordii HOM05D006176 ORTHO05D007346 1.9e-18 96.3 109 45.0
FvH4_6g34980 Fragaria vesca HOM05D006176 ORTHO05D007346 2.4e-18 95.9 115 47.8
FAN14G1476 Fragaria x ananassa HOM05D006176 ORTHO05D007346 2.4e-18 95.9 115 47.8
FAN09G3283 Fragaria x ananassa HOM05D006176 ORTHO05D007346 3.2e-18 95.5 115 47.8
Aqoxy2G03952 Aquilegia oxysepala HOM05D006176 ORTHO05D007346 9.2e-18 94.0 90 53.3
Potri.001G167600 Populus trichocarpa HOM05D006176 ORTHO05D007346 1.6e-17 93.2 118 44.1
MSTRG.10943 Avicennia marina HOM05D006176 ORTHO05D007346 2.1e-17 92.8 97 52.6
DCAR_022691 Daucus carota HOM05D006176 ORTHO05D007346 2.7e-17 92.4 92 48.9
Potri.003G067200 Populus trichocarpa HOM05D006176 ORTHO05D007346 2.7e-17 92.4 110 43.6
Sopen06g022380 Solanum pennellii HOM05D006176 ORTHO05D007346 2.7e-17 92.4 111 46.8
Glyma.07G040000 Glycine max HOM05D006176 ORTHO05D007346 3.5e-17 92.0 124 41.9
Dinv20423 Davidia involucrata HOM05D006176 ORTHO05D007346 4.6e-17 91.7 132 44.7
Prupe.3G039100 Prunus persica HOM05D006176 ORTHO05D007346 4.6e-17 91.7 98 46.9
MSTRG.10944 Avicennia marina HOM05D006176 ORTHO05D007346 1.3e-16 90.1 97 58.8
SGA_v2.0_scaffold4G02067 Striga asiatica HOM05D006176 ORTHO05D007346 2.3e-16 89.4 91 57.1
Rhsim12G0210800 Rhododendron simsii HOM05D006176 ORTHO05D007346 3.9e-16 88.6 120 40.8
MD09G1180800 Malus domestica HOM05D006176 ORTHO05D007346 5.1e-16 88.2 97 48.5
Rhsim12G0210400 Rhododendron simsii HOM05D006176 ORTHO05D007346 5.1e-16 88.2 120 40.8
Nn8g38624 Nelumbo nucifera HOM05D006176 ORTHO05D007346 6.6e-16 87.8 116 41.4
Lsat_1_v5_gn_4_94161 Lactuca sativa HOM05D006176 ORTHO05D007346 8.7e-16 87.4 95 50.5
Lj3g0022886 Lotus japonicus HOM05D006176 ORTHO05D007346 4.3e-15 85.1 113 43.4
MD17G1166900 Malus domestica HOM05D006176 ORTHO05D007346 4.3e-15 85.1 97 45.4
Glyma.16G008800 Glycine max HOM05D006176 ORTHO05D007346 5.6e-15 84.7 116 43.1
TPR.G16753 Trifolium pratense HOM05D006176 ORTHO05D007346 5.6e-15 84.7 105 45.7
vmacro22033 Vaccinium macrocarpon HOM05D006176 ORTHO05D007346 7.3e-15 84.3 97 48.5
MBI13_g35417_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 9.6e-15 84.0 125 41.6
Phvul.010G128700 Phaseolus vulgaris HOM05D006176 ORTHO05D007346 9.6e-15 84.0 115 40.9
Solyc06g062930.1 Solanum lycopersicum HOM05D006176 ORTHO05D007346 9.6e-15 84.0 127 40.9
Medtr8g021025 Medicago truncatula HOM05D006176 ORTHO05D007346 1.3e-14 83.6 120 42.5
Ca_23393_v3 Cicer arietinum L. HOM05D006176 ORTHO05D007346 2.1e-14 82.8 102 44.1
CANSAT56G3952 Cannabis sativa HOM05D006176 ORTHO05D007346 4.8e-14 81.6 89 44.9
PGR102G2654 Punica granatum HOM05D006176 ORTHO05D007346 3.1e-13 79.0 99 43.4
SalBow6G3428 Salvia bowleyana HOM05D006176 ORTHO05D007346 3.1e-13 79.0 53 69.8
Cpa.g.c40357 Carica papaya HOM05D006176 ORTHO05D007346 4.0e-13 78.6 104 44.2
PSO421G0391 Papaver somniferum HOM05D006176 ORTHO05D007346 9.0e-13 77.4 117 43.6
Sc12g0010640 Simmondsia chinensis HOM05D006176 ORTHO05D007346 1.5e-12 76.6 106 41.5
Peaxi162Scf00038g02015 Petunia axillaris HOM05D006176 ORTHO05D007346 2.0e-12 76.3 111 37.8
Lalb_Chr04g0261121 Lupinus albus HOM05D006176 ORTHO05D007346 2.6e-12 75.9 116 44.0
ClCG07G014560 Citrullus lanatus HOM05D006176 ORTHO05D007346 4.4e-12 75.1 92 44.6
Nitab4.5_0000189g0110 Nicotiana tabacum HOM05D006176 ORTHO05D007346 9.9e-12 73.9 107 45.8
Sed0000884 Sechium edule HOM05D006176 ORTHO05D007346 9.9e-12 73.9 101 39.6
Ciclev10027265m.g Citrus clementina HOM05D006176 ORTHO05D007346 1.3e-11 73.6 72 50.0
CsaV3_3G030710 Cucumis sativus L. HOM05D006176 ORTHO05D007346 1.3e-11 73.6 105 41.0
MELO3C022667.2 Cucumis melo HOM05D006176 ORTHO05D007346 1.7e-11 73.2 105 40.0
MBI19_g09833_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 2.2e-11 72.8 120 38.3
TAR624G0214 Trochodendron aralioides HOM05D006176 ORTHO05D007346 2.9e-11 72.4 113 39.8
Sopen03g041090 Solanum pennellii HOM05D006176 ORTHO05D007346 4.9e-11 71.6 93 41.9
Thhalv10011868m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 8.4e-11 70.9 106 40.6
AL1G62840 Arabidopsis lyrata HOM05D006176 ORTHO05D007346 1.9e-10 69.7 106 40.6
Carub.0001s4336 Capsella rubella HOM05D006176 ORTHO05D007346 1.9e-10 69.7 106 40.6
PGSC0003DMG400004373 Solanum tuberosum HOM05D006176 ORTHO05D007346 2.4e-10 69.3 95 47.4
THA.LOC104810370 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 2.4e-10 69.3 103 41.7
BcaB04g17025 Brassica carinata HOM05D006176 ORTHO05D007346 3.2e-10 68.9 110 41.8
BcaB07g33263 Brassica carinata HOM05D006176 ORTHO05D007346 3.2e-10 68.9 106 40.6
CARHR044470 Cardamine hirsuta HOM05D006176 ORTHO05D007346 5.4e-10 68.2 106 39.6
AT1G54120 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 7.1e-10 67.8 104 39.4
BcaC08g43592 Brassica carinata HOM05D006176 ORTHO05D007346 7.1e-10 67.8 106 40.6
C06p09900 Brassica napus HOM05D006176 ORTHO05D007346 7.1e-10 67.8 106 40.6
BolC6t36062H Brassica oleracea HOM05D006176 ORTHO05D007346 7.1e-10 67.8 106 40.6
PSO063G0286 Papaver somniferum HOM05D006176 ORTHO05D007346 7.1e-10 67.8 86 45.3
Sp1g40570 Schrenkiella parvula HOM05D006176 ORTHO05D007346 7.1e-10 67.8 106 39.6
A08p01210 Brassica napus HOM05D006176 ORTHO05D007346 9.3e-10 67.4 110 40.9
BraA06t23268Z Brassica rapa HOM05D006176 ORTHO05D007346 9.3e-10 67.4 106 39.6
BraA08t32172Z Brassica rapa HOM05D006176 ORTHO05D007346 9.3e-10 67.4 110 40.9
A06p00540 Brassica napus HOM05D006176 ORTHO05D007346 1.2e-09 67.0 106 39.6
PGSC0003DMG400022907 Solanum tuberosum HOM05D006176 ORTHO05D007346 1.2e-09 67.0 125 35.2
QL05p004031 Quercus lobata HOM05D006176 ORTHO05D007346 1.6e-09 66.6 115 40.0
C06p15630 Brassica napus HOM05D006176 ORTHO05D007346 2.7e-09 65.9 103 40.8
Sabra03G0039100 Salix brachista HOM05D006176 ORTHO05D007346 2.7e-09 65.9 105 39.0
Aa31LG10G1290 Aethionema arabicum HOM05D006176 ORTHO05D007346 6.0e-09 64.7 109 40.4
Aa31LG8G1260 Aethionema arabicum HOM05D006176 ORTHO05D007346 7.8e-09 64.3 101 40.6
BcaB02g10861 Brassica carinata HOM05D006176 ORTHO05D007346 7.8e-09 64.3 103 38.8
AT3G14060 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 1.0e-08 63.9 118 39.8
HanXRQChr12g0360401 Helianthus annuus HOM05D006176 ORTHO05D007346 1.0e-08 63.9 71 43.7
BcaC01g01436 Brassica carinata HOM05D006176 ORTHO05D007346 1.3e-08 63.5 110 39.1
C03p92010 Brassica napus HOM05D006176 ORTHO05D007346 1.3e-08 63.5 110 39.1
BolC3t21519H Brassica oleracea HOM05D006176 ORTHO05D007346 1.3e-08 63.5 110 39.1
Lsat_1_v5_gn_5_136361 Lactuca sativa HOM05D006176 ORTHO05D007346 1.3e-08 63.5 121 35.5
Lalb_Chr04g0263581 Lupinus albus HOM05D006176 ORTHO05D007346 1.3e-08 63.5 121 38.0
ECA234G1437 Erigeron canadensis HOM05D006176 ORTHO05D007346 3.0e-08 62.4 109 37.6
CDE07G1640 Ceratophyllum demersum HOM05D006176 ORTHO05D007346 3.9e-08 62.0 103 35.9
Sed0005659 Sechium edule HOM05D006176 ORTHO05D007346 3.9e-08 62.0 102 41.2
AL3G26260 Arabidopsis lyrata HOM05D006176 ORTHO05D007346 5.1e-08 61.6 118 39.0
Psat4g168640 Pisum sativum HOM05D006176 ORTHO05D007346 5.1e-08 61.6 62 45.2
BolC6t36752H Brassica oleracea HOM05D006176 ORTHO05D007346 6.6e-08 61.2 88 40.9
Thhalv10021772m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 6.6e-08 61.2 128 38.3
Sp3g12300 Schrenkiella parvula HOM05D006176 ORTHO05D007346 8.7e-08 60.8 118 39.8
THA.LOC104822658 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 1.9e-07 59.7 88 38.6
Nitab4.5_0005192g0040 Nicotiana tabacum HOM05D006176 ORTHO05D007346 4.3e-07 58.5 107 41.1
BcaNung04891 Brassica carinata HOM05D006176 ORTHO05D007346 7.3e-07 57.8 103 40.8
C01p50530 Brassica napus HOM05D006176 ORTHO05D007346 7.3e-07 57.8 103 40.8
A01p39590 Brassica napus HOM05D006176 ORTHO05D007346 2.1e-06 56.2 103 39.8
BraA01t03999Z Brassica rapa HOM05D006176 ORTHO05D007346 2.1e-06 56.2 103 39.8
CARHR088900 Cardamine hirsuta HOM05D006176 ORTHO05D007346 2.8e-06 55.8 118 39.0
BolC1t05004H Brassica oleracea HOM05D006176 ORTHO05D007346 3.6e-06 55.5 103 39.8
BcaC08g44161 Brassica carinata HOM05D006176 ORTHO05D007346 4.8e-06 55.1 86 39.5


User provided reference genes

Program Settings