Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold122G33334 Striga asiatica HOM05D004391 ORTHO05D005193 6.3e-158 560.8 307 100.0
Ciclev10033444m.g Citrus clementina HOM05D004391 ORTHO05D005193 3.8e-22 109.8 61 83.6
SGA_v2.0_scaffold129G34161 Striga asiatica HOM05D004391 ORTHO05D005193 3.8e-22 109.8 53 100.0
Migut.D00804 Erythranthe guttata HOM05D004391 ORTHO05D005193 5.0e-22 109.4 58 87.9
Ciclev10010097m.g Citrus clementina HOM05D004391 ORTHO05D005193 8.6e-22 108.6 61 82.0
Cpa.g.sc2.267 Carica papaya HOM05D004391 ORTHO05D005193 3.3e-21 106.7 61 80.3
Ciclev10013576m.g Citrus clementina HOM05D004391 ORTHO05D005193 7.3e-21 105.5 61 80.3
Oeu025053.1 Olea europaea HOM05D004391 ORTHO05D005193 1.2e-20 104.8 58 86.2
Solyc06g007540.3 Solanum lycopersicum HOM05D004391 ORTHO05D005193 1.2e-20 104.8 63 76.2
Sopen06g002450 Solanum pennellii HOM05D004391 ORTHO05D005193 1.2e-20 104.8 63 76.2
unitig_747.g21439 Utricularia gibba HOM05D001024 ORTHO05D000878 1.2e-20 104.8 58 79.3
COL.COLO4_19488 Corchorus olitorius HOM05D004391 ORTHO05D005193 2.1e-20 104.0 58 82.8
Solyc06g082680.4 Solanum lycopersicum HOM05D004391 ORTHO05D005193 2.8e-20 103.6 58 79.3
Sopen06g034070 Solanum pennellii HOM05D004391 ORTHO05D005193 2.8e-20 103.6 58 79.3
Dinv12291 Davidia involucrata HOM05D000139 ORTHO05D000103 4.7e-20 102.8 63 77.8
PGSC0003DMG400020649 Solanum tuberosum HOM05D004391 ORTHO05D005193 4.7e-20 102.8 57 82.5
Potri.013G159700 Populus trichocarpa HOM05D004391 ORTHO05D005193 6.1e-20 102.4 57 84.2
PGSC0003DMG400030477 Solanum tuberosum HOM05D004391 ORTHO05D005193 6.1e-20 102.4 58 77.6
Nitab4.5_0000105g0300 Nicotiana tabacum HOM05D004391 ORTHO05D005193 8.0e-20 102.1 58 81.0
Nitab4.5_0002167g0040 Nicotiana tabacum HOM05D004391 ORTHO05D005193 8.0e-20 102.1 67 71.6
Prupe.6G038800 Prunus persica HOM05D004391 ORTHO05D005193 8.0e-20 102.1 58 84.5
QL03p059558 Quercus lobata HOM05D004391 ORTHO05D005193 8.0e-20 102.1 69 73.9
Cc01_g15470 Coffea canephora HOM05D004391 ORTHO05D005193 1.0e-19 101.7 58 77.6
Nitab4.5_0003194g0030 Nicotiana tabacum HOM05D004391 ORTHO05D005193 1.0e-19 101.7 58 79.3
Eucgr.G03166 Eucalyptus grandis HOM05D004391 ORTHO05D005193 1.4e-19 101.3 61 78.7
Nitab4.5_0002902g0130 Nicotiana tabacum HOM05D004391 ORTHO05D005193 1.8e-19 100.9 57 82.5
Hma1.2p1_0170F.1_g075340 Hydrangea macrophylla HOM05D004391 ORTHO05D005193 2.3e-19 100.5 58 77.6
Peaxi162Scf00131g10129 Petunia axillaris HOM05D004391 ORTHO05D005193 2.3e-19 100.5 58 77.6
Peaxi162Scf00455g00003 Petunia axillaris HOM05D004391 ORTHO05D005193 2.3e-19 100.5 58 77.6
Potri.019G132000 Populus trichocarpa HOM05D004391 ORTHO05D005193 3.0e-19 100.1 61 75.4
MD13G1094500 Malus domestica HOM05D004391 ORTHO05D005193 4.0e-19 99.8 58 79.3
CiPaw.05G185700 Carya illinoinensis HOM05D004391 ORTHO05D005193 5.2e-19 99.4 58 77.6
Gohir.A13G008200 Gossypium hirsutum HOM05D004391 ORTHO05D005193 5.2e-19 99.4 61 73.8
Os06g0175900 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 5.2e-19 99.4 60 76.7
Os06g0177000 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 5.2e-19 99.4 60 76.7
HPP92_003137 Vanilla planifolia HOM05D004391 ORTHO05D005193 5.2e-19 99.4 61 72.1
Gohir.D13G008800 Gossypium hirsutum HOM05D004391 ORTHO05D005193 6.8e-19 99.0 61 73.8
Prupe.1G250900 Prunus persica HOM05D004391 ORTHO05D005193 6.8e-19 99.0 58 75.9
Sc15g0002370 Simmondsia chinensis HOM05D004391 ORTHO05D005193 6.8e-19 99.0 61 70.5
TWI53G1180 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 6.8e-19 99.0 58 79.3
SalBow3G4275 Salvia bowleyana HOM05D004391 ORTHO05D005193 8.9e-19 98.6 57 80.7
GSVIVG01024535001 Vitis vinifera HOM05D004391 ORTHO05D005193 8.9e-19 98.6 61 73.8
Zm00001eb281780 Zea mays HOM05D004391 ORTHO05D005193 8.9e-19 98.6 70 68.6
MD16G1095600 Malus domestica HOM05D004391 ORTHO05D005193 1.2e-18 98.2 58 77.6
Manes.18G125100 Manihot esculenta HOM05D004391 ORTHO05D005193 1.2e-18 98.2 61 77.0
TWI09G0083 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 1.2e-18 98.2 58 79.3
vmacro02862 Vaccinium macrocarpon HOM05D004391 ORTHO05D005193 1.2e-18 98.2 58 77.6
CSS0038074 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 1.5e-18 97.8 58 77.6
Duzib128G1816 Durio zibethinus HOM05D004391 ORTHO05D005193 1.5e-18 97.8 61 73.8
PGR142G4161 Punica granatum HOM05D004391 ORTHO05D005193 1.5e-18 97.8 58 79.3
GSVIVG01024232001 Vitis vinifera HOM05D004391 ORTHO05D005193 1.5e-18 97.8 61 72.1
MD03G1047800 Malus domestica HOM05D004391 ORTHO05D005193 2.0e-18 97.4 58 77.6
Nitab4.5_0000311g0070 Nicotiana tabacum HOM05D004391 ORTHO05D005193 2.0e-18 97.4 58 74.1
Duzib114G0048 Durio zibethinus HOM05D004391 ORTHO05D005193 2.6e-18 97.1 61 73.8
HPP92_000080 Vanilla planifolia HOM05D004391 ORTHO05D005193 2.6e-18 97.1 61 70.5
Zm00001eb375180 Zea mays HOM05D004391 ORTHO05D005193 2.6e-18 97.1 60 75.0
BcaB01g05713 Brassica carinata HOM05D004391 ORTHO05D005193 3.4e-18 96.7 58 74.1
CARHR207860 Cardamine hirsuta HOM05D004391 ORTHO05D005193 3.4e-18 96.7 58 74.1
Cfa009172 Carpinus fangiana HOM05D004391 ORTHO05D005193 3.4e-18 96.7 58 74.1
AUR62013781 Chenopodium quinoa HOM05D004391 ORTHO05D005193 3.4e-18 96.7 58 74.1
AUR62023375 Chenopodium quinoa HOM05D004391 ORTHO05D005193 3.4e-18 96.7 58 74.1
Gorai.013G009600 Gossypium raimondii HOM05D004391 ORTHO05D005193 3.4e-18 96.7 57 77.2
CAN.G181.27 Capsicum annuum HOM05D004391 ORTHO05D005193 4.4e-18 96.3 58 75.9
Gohir.A05G404700 Gossypium hirsutum HOM05D004391 ORTHO05D005193 4.4e-18 96.3 61 72.1
Gorai.012G013200 Gossypium raimondii HOM05D004391 ORTHO05D005193 4.4e-18 96.3 61 72.1
RcHm_v2.0_Chr5g0073771 Rosa chinensis HOM05D004391 ORTHO05D005193 4.4e-18 96.3 61 75.4
Gohir.D04G011000 Gossypium hirsutum HOM05D004391 ORTHO05D005193 5.7e-18 95.9 61 72.1
Lsat_1_v5_gn_5_177220 Lactuca sativa HOM05D004391 ORTHO05D005193 5.7e-18 95.9 58 69.0
ClCG08G017940 Citrullus lanatus HOM05D004391 ORTHO05D005193 7.5e-18 95.5 58 74.1
THA.LOC104823179 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 7.5e-18 95.5 61 77.0
CAN.G874.64 Capsicum annuum HOM05D004391 ORTHO05D005193 9.8e-18 95.1 58 72.4
Glyma.14G206700 Glycine max HOM05D004391 ORTHO05D005193 1.3e-17 94.7 63 69.8
Glyma.02G237700 Glycine max HOM05D004391 ORTHO05D005193 1.7e-17 94.4 63 69.8
Phvul.008G244100 Phaseolus vulgaris HOM05D004391 ORTHO05D005193 1.7e-17 94.4 63 69.8
Aa31LG11G6460 Aethionema arabicum HOM05D004391 ORTHO05D005193 2.2e-17 94.0 58 74.1
CSS0036971 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 2.2e-17 94.0 58 75.9
Thhalv10015196m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 2.2e-17 94.0 58 74.1
BcaC06g32250 Brassica carinata HOM05D004391 ORTHO05D005193 2.9e-17 93.6 58 72.4
A10p30830 Brassica napus HOM05D004391 ORTHO05D005193 2.9e-17 93.6 58 72.4
C09p71330 Brassica napus HOM05D004391 ORTHO05D005193 2.9e-17 93.6 58 72.4
BolC9t59895H Brassica oleracea HOM05D004391 ORTHO05D005193 2.9e-17 93.6 58 72.4
BraA10t45125Z Brassica rapa HOM05D004391 ORTHO05D005193 2.9e-17 93.6 58 72.4
Carub.0006s0430 Capsella rubella HOM05D004391 ORTHO05D005193 2.9e-17 93.6 58 72.4
Thhalv10015197m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 2.9e-17 93.6 58 72.4
Sp6g37450 Schrenkiella parvula HOM05D004391 ORTHO05D005193 2.9e-17 93.6 58 72.4
Sp6g37680 Schrenkiella parvula HOM05D004391 ORTHO05D005193 2.9e-17 93.6 58 72.4
TAR633G0676 Trochodendron aralioides HOM05D004391 ORTHO05D005193 2.9e-17 93.6 61 73.8
CANSAT80G1344 Cannabis sativa HOM05D004391 ORTHO05D005193 3.7e-17 93.2 58 72.4
AL6G15270 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 4.9e-17 92.8 58 72.4
AT5G05370 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 4.9e-17 92.8 58 72.4
CsaV3_2G024700 Cucumis sativus L. HOM05D004391 ORTHO05D005193 4.9e-17 92.8 60 71.7
MELO3C010670.2 Cucumis melo HOM05D004391 ORTHO05D005193 6.4e-17 92.4 58 70.7
Nn5g26793 Nelumbo nucifera HOM05D004391 ORTHO05D005193 6.4e-17 92.4 61 70.5
Aa31LG3G3850 Aethionema arabicum HOM05D004391 ORTHO05D005193 8.3e-17 92.0 56 75.0
Haze_12207 Corylus avellana HOM05D004391 ORTHO05D005193 8.3e-17 92.0 58 70.7
RcHm_v2.0_Chr4g0441891 Rosa chinensis HOM05D004391 ORTHO05D005193 8.3e-17 92.0 61 67.2
Aa31LG3G4110 Aethionema arabicum HOM05D004391 ORTHO05D005193 1.1e-16 91.7 58 72.4
Lsat_1_v5_gn_9_13380 Lactuca sativa HOM05D000838 ORTHO05D000656 1.4e-16 91.3 64 62.5
Nn5g27585 Nelumbo nucifera HOM05D004391 ORTHO05D005193 1.4e-16 91.3 58 75.9
THA.LOC104816504 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 1.4e-16 91.3 56 78.6
THA.LOC104823167 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 1.4e-16 91.3 56 76.8
ECA248G3374 Erigeron canadensis HOM05D004391 ORTHO05D005193 1.8e-16 90.9 58 65.5
THA.LOC109117202 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 1.8e-16 90.9 56 76.8
Thecc.10G186500 Theobroma cacao HOM05D004391 ORTHO05D005193 1.8e-16 90.9 61 63.9
Sp3g09180 Schrenkiella parvula HOM05D004391 ORTHO05D005193 2.4e-16 90.5 56 73.2
TAR369G0568 Trochodendron aralioides HOM05D004391 ORTHO05D005193 2.4e-16 90.5 61 70.5
A03p02270 Brassica napus HOM05D004391 ORTHO05D005193 3.2e-16 90.1 58 70.7
FAN21G2439 Fragaria x ananassa HOM05D004391 ORTHO05D005193 3.2e-16 90.1 61 68.9
FAN25G0672 Fragaria x ananassa HOM05D004391 ORTHO05D000090 3.2e-16 90.1 61 68.9
AT3G10860 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 4.1e-16 89.7 56 73.2
Carub.0003s1010 Capsella rubella HOM05D004391 ORTHO05D005193 4.1e-16 89.7 56 73.2
ECA236G4577 Erigeron canadensis HOM05D004391 ORTHO05D005193 4.1e-16 89.7 58 69.0
FvH4_3g40960 Fragaria vesca HOM05D004391 ORTHO05D005193 4.1e-16 89.7 61 68.9
FAN11G0346 Fragaria x ananassa HOM05D004391 ORTHO05D005193 4.1e-16 89.7 61 68.9
FAN16G3113 Fragaria x ananassa HOM05D004391 ORTHO05D005193 4.1e-16 89.7 61 68.9
BolC1t05350H Brassica oleracea HOM05D004391 ORTHO05D005193 5.4e-16 89.4 58 69.0
CARHR085430 Cardamine hirsuta HOM05D004391 ORTHO05D005193 5.4e-16 89.4 56 71.4
A05p38380 Brassica napus HOM05D004391 ORTHO05D005193 9.2e-16 88.6 56 71.4
C05p57280 Brassica napus HOM05D004391 ORTHO05D005193 9.2e-16 88.6 56 71.4
BolC5t34384H Brassica oleracea HOM05D004391 ORTHO05D005193 9.2e-16 88.6 56 71.4
BraA01t04219Z Brassica rapa HOM05D004391 ORTHO05D005193 9.2e-16 88.6 56 71.4
BraA05t22629Z Brassica rapa HOM05D004391 ORTHO05D005193 9.2e-16 88.6 56 71.4
Thhalv10021877m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 9.2e-16 88.6 56 71.4
VMungo0647G0523 Vigna mungo HOM05D004391 ORTHO05D005193 9.2e-16 88.6 57 73.7
arahy.Tifrunner.gnm1.ann1.M2MMUV Arachis hypogaea HOM05D004391 ORTHO05D005193 1.6e-15 87.8 61 68.9
SHI19278 Sapria himalayana HOM05D004391 ORTHO05D005193 1.6e-15 87.8 57 71.9
AL3G22380 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 2.0e-15 87.4 56 71.4
HanXRQChr05g0158631 Helianthus annuus HOM05D004391 ORTHO05D005193 2.0e-15 87.4 58 62.1
LjContig00141g0006354 Lotus japonicus HOM05D004391 ORTHO05D005193 2.0e-15 87.4 61 65.6
Ah.05g177740 Amaranthus hybridus HOM05D004391 ORTHO05D005193 2.7e-15 87.0 58 67.2
Sed0004860 Sechium edule HOM05D004391 ORTHO05D005193 2.7e-15 87.0 58 70.7
FvH4_4g32870 Fragaria vesca HOM05D004391 ORTHO05D005193 4.6e-15 86.3 61 63.9
FAN12G3281 Fragaria x ananassa HOM05D004391 ORTHO05D005193 4.6e-15 86.3 61 63.9
FAN07G1869 Fragaria x ananassa HOM05D004391 ORTHO05D005193 7.8e-15 85.5 53 71.7
FAN17G0118 Fragaria x ananassa HOM05D004391 ORTHO05D005193 7.8e-15 85.5 53 71.7
FAN22G1549 Fragaria x ananassa HOM05D004391 ORTHO05D005193 7.8e-15 85.5 53 71.7
HanXRQChr10g0292911 Helianthus annuus HOM05D004391 ORTHO05D005193 1.0e-14 85.1 58 62.1
Medtr5g075690 Medicago truncatula HOM05D004391 ORTHO05D005193 1.0e-14 85.1 61 63.9
Aqoxy2G00689 Aquilegia oxysepala HOM05D004391 ORTHO05D005193 3.0e-14 83.6 58 69.0
Lalb_Chr04g0251641 Lupinus albus HOM05D004391 ORTHO05D005193 3.0e-14 83.6 58 69.0
Lsat_1_v5_gn_8_98921 Lactuca sativa HOM05D004391 ORTHO05D005193 3.9e-14 83.2 57 68.4
TPR.G7542 Trifolium pratense HOM05D004391 ORTHO05D005193 5.0e-14 82.8 61 62.3
Lsat_1_v5_gn_8_98901 Lactuca sativa HOM05D004391 ORTHO05D005193 6.6e-14 82.4 52 71.2
Lsat_1_v5_gn_9_13340 Lactuca sativa HOM05D004391 ORTHO05D005193 1.9e-13 80.9 72 51.4
Lalb_Chr10g0103971 Lupinus albus HOM05D004391 ORTHO05D005193 1.9e-13 80.9 58 63.8
FvH4_4g07960 Fragaria vesca HOM05D004391 ORTHO05D005193 7.3e-13 79.0 61 63.9
CBR_g1035 Chara braunii HOM05D004391 ORTHO05D005193 1.0e-11 75.1 61 54.1
SEGI_31881 Sequoiadendron giganteum HOM05D004391 ORTHO05D005193 1.5e-10 71.2 53 58.5
AagrBONN_evm.TU.Sc2ySwM_362.2485 Anthoceros agrestis HOM05D004391 ORTHO05D005193 1.7e-09 67.8 56 55.4
Pp3c11_2590 Physcomitrium patens HOM05D004391 ORTHO05D005193 1.7e-09 67.8 61 49.2
Pp3c1_1570 Physcomitrium patens HOM05D004391 ORTHO05D005193 1.7e-09 67.8 61 49.2
Pp3c7_21160 Physcomitrium patens HOM05D004391 ORTHO05D005193 1.7e-09 67.8 61 49.2
Oeu007160.1 Olea europaea HOM05D004391 ORTHO05D005193 2.9e-09 67.0 55 63.6
DCAR_018583 Daucus carota HOM05D004391 ORTHO05D005193 1.1e-08 65.1 55 50.9
EL10Ac1g00726 Beta vulgaris HOM05D004391 ORTHO05D005193 1.2e-07 61.6 38 73.7
Pp3c13_7360 Physcomitrium patens HOM05D004391 ORTHO05D005193 2.0e-07 60.8 58 46.6
BcaB05g21720 Brassica carinata HOM05D004391 ORTHO05D005193 1.0e-06 58.5 52 57.7
BolC2t06197H Brassica oleracea HOM05D004391 ORTHO05D005193 1.3e-06 58.2 37 70.3
BcaB04g21171 Brassica carinata HOM05D004391 ORTHO05D005193 5.0e-06 56.2 38 63.2


User provided reference genes

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