Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold122G33290 Striga asiatica HOM05D004074 ORTHO05D004717 5.4e-59 230.7 111 100.0
SGA_v2.0_scaffold71G24013 Striga asiatica HOM05D001270 ORTHO05D001099 1.9e-27 125.9 92 70.7
Nitab4.5_0002661g0050 Nicotiana tabacum HOM05D004074 ORTHO05D004717 7.1e-27 124.0 74 74.3
unitig_748.g7476 Utricularia gibba HOM05D004074 ORTHO05D004717 3.5e-26 121.7 60 91.7
Oeu040350.2 Olea europaea HOM05D004074 ORTHO05D004717 4.6e-26 121.3 60 90.0
Actinidia38792 Actinidia chinensis HOM05D004074 ORTHO05D004717 6.0e-26 120.9 60 90.0
Actinidia21867 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.3e-25 119.8 60 88.3
COL.COLO4_13992 Corchorus olitorius HOM05D004074 ORTHO05D004717 3.0e-25 118.6 60 86.7
Migut.I01175 Erythranthe guttata HOM05D004074 ORTHO05D004717 3.9e-25 118.2 60 86.7
Nitab4.5_0000357g0290 Nicotiana tabacum HOM05D004074 ORTHO05D004717 3.9e-25 118.2 62 83.9
vmacro18761 Vaccinium macrocarpon HOM05D004074 ORTHO05D004717 3.9e-25 118.2 60 86.7
Nitab4.5_0008628g0040 Nicotiana tabacum HOM05D004074 ORTHO05D004717 5.1e-25 117.9 60 86.7
Actinidia00635 Actinidia chinensis HOM05D004074 ORTHO05D004717 6.7e-25 117.5 60 86.7
Actinidia25993 Actinidia chinensis HOM05D004074 ORTHO05D004717 6.7e-25 117.5 60 86.7
Cpa.g.sc1009.1 Carica papaya HOM05D004074 ORTHO05D004717 6.7e-25 117.5 60 86.7
Gohir.D11G059000 Gossypium hirsutum HOM05D004074 ORTHO05D004717 6.7e-25 117.5 60 85.0
Gohir.D12G001400 Gossypium hirsutum HOM05D004074 ORTHO05D004717 6.7e-25 117.5 60 85.0
Gorai.007G063900 Gossypium raimondii HOM05D004074 ORTHO05D004717 6.7e-25 117.5 60 85.0
Manes.05G195000 Manihot esculenta HOM05D004074 ORTHO05D004717 6.7e-25 117.5 60 86.7
Nitab4.5_0001691g0090 Nicotiana tabacum HOM05D004074 ORTHO05D004717 6.7e-25 117.5 60 85.0
Nitab4.5_0002885g0120 Nicotiana tabacum HOM05D004074 ORTHO05D004717 6.7e-25 117.5 60 85.0
CSS0037999 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 8.7e-25 117.1 60 85.0
CSS0039874 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 8.7e-25 117.1 60 85.0
Cc01_g08930 Coffea canephora HOM05D004074 ORTHO05D004717 8.7e-25 117.1 60 88.3
Thecc.01G124200 Theobroma cacao HOM05D004074 ORTHO05D004717 8.7e-25 117.1 60 85.0
ClCG09G001480 Citrullus lanatus HOM05D004074 ORTHO05D004717 1.1e-24 116.7 60 85.0
Rhsim08G0247900 Rhododendron simsii HOM05D004074 ORTHO05D004717 1.1e-24 116.7 64 81.2
Ciclev10026787m.g Citrus clementina HOM05D004074 ORTHO05D004717 1.5e-24 116.3 60 83.3
Gohir.A12G001600 Gossypium hirsutum HOM05D004074 ORTHO05D004717 1.5e-24 116.3 60 83.3
Gorai.008G000800 Gossypium raimondii HOM05D004074 ORTHO05D004717 1.5e-24 116.3 60 83.3
Actinidia31138 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.9e-24 115.9 60 85.0
Dinv20359 Davidia involucrata HOM05D004074 ORTHO05D004717 1.9e-24 115.9 60 85.0
Duzib264G1024 Durio zibethinus HOM05D004074 ORTHO05D004717 1.9e-24 115.9 60 83.3
Gohir.A11G055200 Gossypium hirsutum HOM05D004074 ORTHO05D004717 1.9e-24 115.9 60 83.3
Rhsim06G0076700 Rhododendron simsii HOM05D004074 ORTHO05D004717 1.9e-24 115.9 60 85.0
Duzib147G0570 Durio zibethinus HOM05D004074 ORTHO05D004717 2.5e-24 115.5 60 81.7
FvH4_6g37330 Fragaria vesca HOM05D004074 ORTHO05D004717 2.5e-24 115.5 60 83.3
FAN14G4331 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.5e-24 115.5 60 83.3
Nitab4.5_0007548g0020 Nicotiana tabacum HOM05D004074 ORTHO05D004717 2.5e-24 115.5 60 85.0
PGSC0003DMG402009187 Solanum tuberosum HOM05D004074 ORTHO05D004717 2.5e-24 115.5 60 83.3
BcaB04g17185 Brassica carinata HOM05D004074 ORTHO05D004717 3.3e-24 115.2 60 83.3
CARHR041810 Cardamine hirsuta HOM05D004074 ORTHO05D004717 3.3e-24 115.2 60 83.3
CiPaw.01G088100 Carya illinoinensis HOM05D004074 ORTHO05D004717 3.3e-24 115.2 60 83.3
Prupe.3G167500 Prunus persica HOM05D004074 ORTHO05D004717 3.3e-24 115.2 59 84.7
Solyc06g063220.3 Solanum lycopersicum HOM05D004074 ORTHO05D004717 3.3e-24 115.2 60 83.3
Sopen06g022670 Solanum pennellii HOM05D004074 ORTHO05D004717 3.3e-24 115.2 60 83.3
CAN.G1073.1 Capsicum annuum HOM05D004074 ORTHO05D004717 4.3e-24 114.8 60 81.7
MELO3C024297.2 Cucumis melo HOM05D004074 ORTHO05D004717 4.3e-24 114.8 60 83.3
Peaxi162Scf00038g02442 Petunia axillaris HOM05D004074 ORTHO05D004717 4.3e-24 114.8 60 81.7
PGR102G2231 Punica granatum HOM05D004074 ORTHO05D004717 4.3e-24 114.8 60 83.3
unitig_32.g11555 Utricularia gibba HOM05D004074 ORTHO05D004717 4.3e-24 114.8 60 85.0
Hma1.2p1_0039F.1_g024790 Hydrangea macrophylla HOM05D004074 ORTHO05D004717 5.6e-24 114.4 60 83.3
A08p02600 Brassica napus HOM05D004074 ORTHO05D004717 7.4e-24 114.0 60 81.7
BraA08t32299Z Brassica rapa HOM05D004074 ORTHO05D004717 7.4e-24 114.0 60 81.7
Duzib187G1118 Durio zibethinus HOM05D004074 ORTHO05D004717 7.4e-24 114.0 60 81.7
FAN02G0872 Fragaria x ananassa HOM05D004074 ORTHO05D004717 7.4e-24 114.0 60 81.7
FAN05G0051 Fragaria x ananassa HOM05D004074 ORTHO05D004717 7.4e-24 114.0 60 81.7
FAN09G3199 Fragaria x ananassa HOM05D004074 ORTHO05D004717 7.4e-24 114.0 60 81.7
CAN.G790.25 Capsicum annuum HOM05D004074 ORTHO05D004717 9.6e-24 113.6 60 81.7
CDE02G0689 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 9.6e-24 113.6 60 83.3
HanXRQChr10g0311531 Helianthus annuus HOM05D004074 ORTHO05D004717 9.6e-24 113.6 60 81.7
Phvul.008G255900 Phaseolus vulgaris HOM05D004074 ORTHO05D004717 9.6e-24 113.6 60 81.7
VMungo0647G0339 Vigna mungo HOM05D001270 ORTHO05D001099 9.6e-24 113.6 70 74.3
Dinv37799 Davidia involucrata HOM05D004074 ORTHO05D004717 1.3e-23 113.2 60 81.7
Sp1g38290 Schrenkiella parvula HOM05D004074 ORTHO05D004717 1.3e-23 113.2 60 81.7
Sopen12g024230 Solanum pennellii HOM05D004074 ORTHO05D004717 1.3e-23 113.2 60 80.0
PGSC0003DMG400028842 Solanum tuberosum HOM05D004074 ORTHO05D004717 1.3e-23 113.2 60 80.0
AL1G59560 Arabidopsis lyrata HOM05D004074 ORTHO05D004717 1.6e-23 112.8 60 80.0
AT1G51650 Arabidopsis thaliana HOM05D004074 ORTHO05D004717 1.6e-23 112.8 60 80.0
CsaV3_7G033840 Cucumis sativus L. HOM05D004074 ORTHO05D004717 1.6e-23 112.8 60 81.7
Glyma.08G222900 Glycine max HOM05D004074 ORTHO05D004717 1.6e-23 112.8 60 81.7
MD09G1158500 Malus domestica HOM05D004074 ORTHO05D004717 1.6e-23 112.8 60 80.0
Nn5g30428 Nelumbo nucifera HOM05D004074 ORTHO05D004717 2.1e-23 112.5 59 83.1
Nn6g31693 Nelumbo nucifera HOM05D004074 ORTHO05D004717 2.8e-23 112.1 58 84.5
Nn8g40291 Nelumbo nucifera HOM05D004074 ORTHO05D004717 2.8e-23 112.1 58 84.5
Potri.008G008900 Populus trichocarpa HOM05D004074 ORTHO05D004717 2.8e-23 112.1 60 83.3
Potri.010G250000 Populus trichocarpa HOM05D004074 ORTHO05D004717 2.8e-23 112.1 60 83.3
Solyc12g055760.2 Solanum lycopersicum HOM05D004074 ORTHO05D004717 2.8e-23 112.1 60 78.3
BraA01t03480Z Brassica rapa HOM05D004074 ORTHO05D004717 3.7e-23 111.7 60 78.3
ECA234G0987 Erigeron canadensis HOM05D004074 ORTHO05D004717 3.7e-23 111.7 60 80.0
RcHm_v2.0_Chr2g0150171 Rosa chinensis HOM05D004074 ORTHO05D004717 3.7e-23 111.7 60 80.0
Sed0005809 Sechium edule HOM05D004074 ORTHO05D004717 3.7e-23 111.7 60 78.3
BolC1t04251H Brassica oleracea HOM05D004074 ORTHO05D004717 4.8e-23 111.3 60 78.3
Thhalv10011901m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 4.8e-23 111.3 60 80.0
HanXRQChr12g0359921 Helianthus annuus HOM05D004074 ORTHO05D004717 4.8e-23 111.3 60 78.3
Psat1g059640 Pisum sativum HOM05D004074 ORTHO05D004717 4.8e-23 111.3 60 80.0
TWI77G0047 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 4.8e-23 111.3 60 80.0
CDE05G2863 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 6.2e-23 110.9 60 78.3
Medtr5g040610 Medicago truncatula HOM05D004074 ORTHO05D004717 6.2e-23 110.9 61 78.7
PGSC0003DMG400026508 Solanum tuberosum HOM05D004074 ORTHO05D004717 8.2e-23 110.5 60 78.3
BcaB04g20604 Brassica carinata HOM05D004074 ORTHO05D004717 1.1e-22 110.2 60 76.7
BcaNung05296 Brassica carinata HOM05D004074 ORTHO05D004717 1.1e-22 110.2 60 76.7
A01p33680 Brassica napus HOM05D004074 ORTHO05D004717 1.1e-22 110.2 60 76.7
C01p43050 Brassica napus HOM05D004074 ORTHO05D004717 1.1e-22 110.2 60 76.7
Thhalv10021996m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 1.1e-22 110.2 60 76.7
TWI53G1078 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 1.1e-22 110.2 60 78.3
BcaB02g11264 Brassica carinata HOM05D004074 ORTHO05D004717 1.4e-22 109.8 60 80.0
BcaB04g19151 Brassica carinata HOM05D004074 ORTHO05D004717 1.4e-22 109.8 60 76.7
BcaC01g03518 Brassica carinata HOM05D004074 ORTHO05D004717 1.4e-22 109.8 60 76.7
A05p19470 Brassica napus HOM05D004074 ORTHO05D004717 1.4e-22 109.8 60 80.0
BolC3t17439H Brassica oleracea HOM05D000606 ORTHO05D001265 1.4e-22 109.8 60 76.7
BraA03t13364Z Brassica rapa HOM05D000606 ORTHO05D001265 1.4e-22 109.8 60 76.7
BraA05t20851Z Brassica rapa HOM05D004074 ORTHO05D004717 1.4e-22 109.8 60 80.0
CARHR097100 Cardamine hirsuta HOM05D004074 ORTHO05D004717 1.4e-22 109.8 60 76.7
Sabra08G0005100 Salix brachista HOM05D004074 ORTHO05D004717 1.4e-22 109.8 85 63.5
CANSAT01G1956 Cannabis sativa HOM05D004074 ORTHO05D004717 1.8e-22 109.4 60 81.7
MBI04_g18036_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 1.8e-22 109.4 58 81.0
Sabra10G0194600 Salix brachista HOM05D004074 ORTHO05D004717 1.8e-22 109.4 60 80.0
THA.LOC104821596 Tarenaya hassleriana HOM05D004074 ORTHO05D004717 1.8e-22 109.4 60 76.7
TPR.G2285 Trifolium pratense HOM05D004074 ORTHO05D004717 1.8e-22 109.4 60 78.3
ATR0580G305 Amborella trichopoda HOM05D004074 ORTHO05D004717 3.1e-22 108.6 59 78.0
Carub.0001s4049 Capsella rubella HOM05D004074 ORTHO05D004717 3.1e-22 108.6 60 78.3
Glyma.07G003700 Glycine max HOM05D004074 ORTHO05D004717 3.1e-22 108.6 60 76.7
Aa31LG10G3130 Aethionema arabicum HOM05D004074 ORTHO05D004717 4.0e-22 108.2 60 78.3
BcaC08g43926 Brassica carinata HOM05D004074 ORTHO05D004717 4.0e-22 108.2 60 80.0
C06p13180 Brassica napus HOM05D004074 ORTHO05D004717 4.0e-22 108.2 60 80.0
BolC6t36474H Brassica oleracea HOM05D004074 ORTHO05D004717 4.0e-22 108.2 60 80.0
QL05p083316 Quercus lobata HOM05D004074 ORTHO05D004717 4.0e-22 108.2 59 78.0
BcaC09g49057 Brassica carinata HOM05D004074 ORTHO05D004717 5.3e-22 107.8 60 75.0
Haze_03743 Corylus avellana HOM05D004074 ORTHO05D004717 5.3e-22 107.8 58 77.6
Hund14448 Selenicereus undatus HOM05D004074 ORTHO05D004717 5.3e-22 107.8 58 79.3
TAR383G0992 Trochodendron aralioides HOM05D004074 ORTHO05D004717 5.3e-22 107.8 66 68.2
Aa31LG8G7900 Aethionema arabicum HOM05D004074 ORTHO05D004717 9.0e-22 107.1 60 76.7
Psat7g263760 Pisum sativum HOM05D004074 ORTHO05D004717 9.0e-22 107.1 59 74.6
HPP92_021730 Vanilla planifolia HOM05D004074 ORTHO05D004717 9.0e-22 107.1 58 79.3
Sp3g19200 Schrenkiella parvula HOM05D004074 ORTHO05D004717 1.2e-21 106.7 60 73.3
Lsat_1_v5_gn_4_88780 Lactuca sativa HOM05D004074 ORTHO05D004717 1.5e-21 106.3 60 76.7
Hund11291 Selenicereus undatus HOM05D004074 ORTHO05D004717 1.5e-21 106.3 58 79.3
BolC8t49078H Brassica oleracea HOM05D004074 ORTHO05D004717 2.0e-21 105.9 60 73.3
Lj3g0011227 Lotus japonicus HOM05D004074 ORTHO05D004717 2.0e-21 105.9 55 81.8
TAR626G1506 Trochodendron aralioides HOM05D004074 ORTHO05D004717 2.0e-21 105.9 60 75.0
arahy.Tifrunner.gnm1.ann1.9ZAP4M Arachis hypogaea HOM05D004074 ORTHO05D004717 3.4e-21 105.1 59 72.9
SHI21232 Sapria himalayana HOM05D004074 ORTHO05D004717 4.5e-21 104.8 60 75.0
Ah.07g199420 Amaranthus hybridus HOM05D004074 ORTHO05D004717 7.6e-21 104.0 61 73.8
DCAR_007668 Daucus carota HOM05D004074 ORTHO05D004717 7.6e-21 104.0 63 68.3
EL10Ac5g12205 Beta vulgaris HOM05D004074 ORTHO05D004717 1.0e-20 103.6 62 71.0
Aqoxy7G03184 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 1.3e-20 103.2 60 76.7
Lalb_Chr25g0278611 Lupinus albus HOM05D004074 ORTHO05D004717 2.2e-20 102.4 59 71.2
QL05p083267 Quercus lobata HOM05D004074 ORTHO05D004717 2.9e-20 102.1 66 65.2
Eucgr.F04009 Eucalyptus grandis HOM05D004074 ORTHO05D004717 3.8e-20 101.7 57 77.2
Os08g0250200 Oryza sativa ssp. japonica HOM05D004074 ORTHO05D004717 3.8e-20 101.7 59 76.3
BcaC03g13642 Brassica carinata HOM05D000239 ORTHO05D004717 4.9e-20 101.3 86 53.5
PSO170G4934 Papaver somniferum HOM05D004074 ORTHO05D004717 6.5e-20 100.9 59 74.6
PSO339G3796 Papaver somniferum HOM05D004074 ORTHO05D004717 6.5e-20 100.9 59 74.6
Zm00001eb161770 Zea mays HOM05D004074 ORTHO05D004717 6.5e-20 100.9 59 74.6
Zm00001eb357940 Zea mays HOM05D004074 ORTHO05D004717 6.5e-20 100.9 59 74.6
C02p10320 Brassica napus HOM05D004074 ORTHO05D004717 3.2e-19 98.6 60 70.0
AUR62018789 Chenopodium quinoa HOM05D004074 ORTHO05D004717 4.2e-19 98.2 60 71.7
BcaC08g44915 Brassica carinata HOM05D004074 ORTHO05D004717 5.5e-19 97.8 61 70.5
C06p25410 Brassica napus HOM05D004074 ORTHO05D004717 5.5e-19 97.8 61 70.5
BolC6t37702H Brassica oleracea HOM05D004074 ORTHO05D004717 5.5e-19 97.8 61 70.5
Aqoxy5G02869 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 1.6e-18 96.3 57 71.9
SEGI_28642 Sequoiadendron giganteum HOM05D004074 ORTHO05D004717 3.5e-18 95.1 60 63.3
HPP92_021648 Vanilla planifolia HOM05D004074 ORTHO05D004717 2.3e-17 92.4 49 83.7
GSVIVG01037184001 Vitis vinifera HOM05D004074 ORTHO05D004717 2.3e-17 92.4 56 71.4
SalBow6G5392 Salvia bowleyana HOM05D004074 ORTHO05D004717 8.7e-17 90.5 46 87.0
MBI14_g24286_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 7.4e-16 87.4 46 78.3
GSVIVG01037963001 Vitis vinifera HOM05D004074 ORTHO05D004717 7.4e-16 87.4 46 80.4
Lsat_1_v5_gn_5_137500 Lactuca sativa HOM05D001270 ORTHO05D001099 1.3e-15 86.7 97 47.4
AagrBONN_evm.TU.Sc2ySwM_117.3571 Anthoceros agrestis HOM05D004074 ORTHO05D004717 2.8e-15 85.5 60 56.7
AagrBONN_evm.TU.Sc2ySwM_344.1495 Anthoceros agrestis HOM05D004074 ORTHO05D004717 1.4e-14 83.2 60 55.0
C02p45000 Brassica napus HOM05D000128 ORTHO05D000059 4.1e-14 81.6 45 77.8
Pp3c2_24870 Physcomitrium patens HOM05D004074 ORTHO05D004717 3.4e-13 78.6 71 46.5
Pp3c1_12120 Physcomitrium patens HOM05D004074 ORTHO05D004717 4.5e-13 78.2 70 47.1
SMO351G0623 Selaginella moellendorffii HOM05D004074 ORTHO05D004717 5.9e-13 77.8 56 53.6
Thhalv10022333m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 6.5e-12 74.3 60 56.7
Pp3c1_10140 Physcomitrium patens HOM05D004074 ORTHO05D004717 5.5e-11 71.2 53 58.5
Mapoly0001s0230 Marchantia polymorpha HOM05D004074 ORTHO05D004717 1.2e-10 70.1 54 51.9
PSO455G0136 Papaver somniferum HOM05D004074 ORTHO05D004717 1.6e-10 69.7 38 78.9
MCO11G253 Micromonas commoda HOM05D004074 ORTHO05D004717 2.7e-10 68.9 59 50.8
PRCOL_00000946 Prasinoderma coloniale HOM05D004074 ORTHO05D004717 2.7e-10 68.9 50 58.0
Medtr4g005960 Medicago truncatula HOM05D004074 ORTHO05D004717 1.4e-09 66.6 73 45.2
Zm00001eb394860 Zea mays HOM05D004074 ORTHO05D004717 3.9e-09 65.1 46 60.9
Cre10.g420700 Chlamydomonas reinhardtii HOM05D004074 ORTHO05D004717 1.7e-07 59.7 50 48.0
SGA_v2.0_scaffold234G43604 Striga asiatica HOM05D004074 ORTHO05D405016 8.2e-07 57.4 31 77.4


User provided reference genes

Program Settings