Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold122G33277 Striga asiatica HOM05D003731 ORTHO05D004429 5.1e-193 677.6 338 100.0
SGA_v2.0_scaffold71G23998 Striga asiatica HOM05D003731 ORTHO05D004429 4.2e-147 525.0 416 69.0
Migut.I01187 Erythranthe guttata HOM05D003731 ORTHO05D004429 6.3e-135 484.6 393 65.4
MSTRG.22505 Avicennia marina HOM05D003731 ORTHO05D004429 5.4e-126 454.9 391 61.6
Oeu001813.1 Olea europaea HOM05D003731 ORTHO05D004429 6.4e-119 431.4 396 59.8
Dinv20345 Davidia involucrata HOM05D003731 ORTHO05D008196 9.8e-112 407.5 393 57.5
Hma1.2p1_0517F.1_g170700 Hydrangea macrophylla HOM05D003731 ORTHO05D004429 3.7e-111 405.6 394 56.9
Actinidia31131 Actinidia chinensis HOM05D003731 ORTHO05D004429 1.2e-109 400.6 399 55.9
Dinv37787 Davidia involucrata HOM05D003731 ORTHO05D004429 1.3e-108 397.1 394 56.6
vmacro18751 Vaccinium macrocarpon HOM05D003731 ORTHO05D004429 5.6e-107 391.7 351 61.0
Nitab4.5_0002354g0040 Nicotiana tabacum HOM05D003731 ORTHO05D004429 1.2e-106 390.6 393 56.0
Rhsim08G0249300 Rhododendron simsii HOM05D003731 ORTHO05D004429 1.2e-106 390.6 393 56.7
Hma1.2p1_1111F.1_g258350 Hydrangea macrophylla HOM05D003731 ORTHO05D004429 2.8e-106 389.4 370 57.8
Sopen06g022750 Solanum pennellii HOM05D003731 ORTHO05D004429 3.6e-106 389.0 395 55.4
CiPaw.01G089700 Carya illinoinensis HOM05D003731 ORTHO05D004429 8.1e-106 387.9 395 57.7
Solyc06g063290.3 Solanum lycopersicum HOM05D003731 ORTHO05D004429 4.0e-105 385.6 396 55.1
Manes.16G046301 Manihot esculenta HOM05D003731 ORTHO05D004429 5.2e-105 385.2 403 55.6
PGSC0003DMG401026514 Solanum tuberosum HOM05D003731 ORTHO05D004429 8.9e-105 384.4 395 54.9
Cfa002143 Carpinus fangiana HOM05D003731 ORTHO05D004429 2.0e-104 383.3 398 57.0
GSVIVG01029573001 Vitis vinifera HOM05D003731 ORTHO05D004429 3.4e-104 382.5 410 55.4
CSS0017795 Camellia sinensis var. sinensis HOM05D003731 ORTHO05D004429 4.4e-104 382.1 435 52.6
Prupe.3G020500 Prunus persica HOM05D003731 ORTHO05D004429 2.9e-103 379.4 393 57.3
Potri.008G006400 Populus trichocarpa HOM05D003731 ORTHO05D004429 1.1e-102 377.5 344 59.0
Cc04_g00280 Coffea canephora HOM05D003731 ORTHO05D004429 1.9e-102 376.7 346 59.5
DCAR_022617 Daucus carota HOM05D003731 ORTHO05D004429 3.2e-102 375.9 351 59.0
unitig_32.g11007 Utricularia gibba HOM05D003731 ORTHO05D004429 1.2e-101 374.0 393 54.2
TWI12G0642 Tripterygium wilfordii HOM05D003731 ORTHO05D004429 2.1e-101 373.2 408 54.9
Oeu050745.3 Olea europaea HOM05D003731 ORTHO05D004429 4.6e-101 372.1 464 48.9
Potri.010G252300 Populus trichocarpa HOM05D003731 ORTHO05D004429 4.6e-101 372.1 394 53.6
TAR625G0125 Trochodendron aralioides HOM05D003731 ORTHO05D004429 4.6e-101 372.1 402 56.5
MD09G1161400 Malus domestica HOM05D003731 ORTHO05D004429 7.8e-101 371.3 390 55.9
CAN.G308.12 Capsicum annuum HOM05D003731 ORTHO05D004429 1.0e-100 370.9 392 53.8
Ca_20505_v3 Cicer arietinum L. HOM05D003731 ORTHO05D004429 1.0e-100 370.9 359 57.9
Gohir.A05G114300 Gossypium hirsutum HOM05D003731 ORTHO05D004429 1.0e-100 370.9 406 54.2
Lj3g0007083 Lotus japonicus HOM05D003731 ORTHO05D004429 1.0e-100 370.9 396 55.3
RcHm_v2.0_Chr2g0149681 Rosa chinensis HOM05D003731 ORTHO05D004429 1.3e-100 370.5 398 56.0
Atru.chr1.2721 Acer truncatum HOM05D003731 ORTHO05D004429 2.3e-100 369.8 396 54.3
Duzib235G1293 Durio zibethinus HOM05D003731 ORTHO05D004429 2.3e-100 369.8 401 53.1
arahy.Tifrunner.gnm1.ann1.C9Z78F Arachis hypogaea HOM05D003731 ORTHO05D004429 3.9e-100 369.0 376 56.1
QL05p083882 Quercus lobata HOM05D003731 ORTHO05D004429 5.1e-100 368.6 434 51.8
TWI18G0412 Tripterygium wilfordii HOM05D003731 ORTHO05D004429 5.1e-100 368.6 384 54.9
Gorai.005G122100 Gossypium raimondii HOM05D003731 ORTHO05D004429 6.6e-100 368.2 399 54.6
Gohir.D02G107500 Gossypium hirsutum HOM05D003731 ORTHO05D004429 8.6e-100 367.9 398 54.3
arahy.Tifrunner.gnm1.ann1.T57K28 Arachis hypogaea HOM05D003731 ORTHO05D004429 1.1e-99 367.5 376 55.9
Lalb_Chr01g0011841 Lupinus albus HOM05D003731 ORTHO05D004429 1.5e-99 367.1 315 62.2
CANSAT01G0693 Cannabis sativa HOM05D003731 ORTHO05D004429 2.5e-99 366.3 397 54.4
Gohir.D05G114600 Gossypium hirsutum HOM05D003731 ORTHO05D004429 2.5e-99 366.3 406 53.7
Thecc.06G059900 Theobroma cacao HOM05D003731 ORTHO05D004429 2.5e-99 366.3 407 53.1
Medtr4g007990 Medicago truncatula HOM05D003731 ORTHO05D004429 3.3e-99 365.9 394 54.6
Eucgr.F04024 Eucalyptus grandis HOM05D003731 ORTHO05D004429 4.3e-99 365.5 320 61.6
Aa31LG10G3210 Aethionema arabicum HOM05D003731 ORTHO05D004429 1.2e-98 364.0 344 56.7
AL1G59450 Arabidopsis lyrata HOM05D003731 ORTHO05D004429 2.1e-98 363.2 343 57.7
CARHR041710 Cardamine hirsuta HOM05D003731 ORTHO05D004429 2.1e-98 363.2 345 57.7
FvH4_6g37120 Fragaria vesca HOM05D003731 ORTHO05D004429 2.8e-98 362.8 342 58.5
THA.LOC104798773 Tarenaya hassleriana HOM05D003731 ORTHO05D004429 2.8e-98 362.8 341 58.1
MD17G1147200 Malus domestica HOM05D003731 ORTHO05D004429 3.6e-98 362.5 401 54.9
Sed0015920 Sechium edule HOM05D003731 ORTHO05D004429 4.7e-98 362.1 404 54.2
THA.LOC104817922 Tarenaya hassleriana HOM05D003731 ORTHO05D004429 8.1e-98 361.3 331 58.9
Nitab4.5_0006975g0010 Nicotiana tabacum HOM05D003731 ORTHO05D004429 1.1e-97 360.9 394 52.0
Gorai.009G118800 Gossypium raimondii HOM05D003731 ORTHO05D004429 1.4e-97 360.5 430 51.4
FAN09G0689 Fragaria x ananassa HOM05D003731 ORTHO05D004429 6.8e-97 358.2 301 63.8
AT1G51560 Arabidopsis thaliana HOM05D003731 ORTHO05D004429 8.9e-97 357.8 313 59.4
Lj9A542G26 Lonicera japonica HOM05D003731 ORTHO05D004429 8.9e-97 357.8 287 65.9
VMungo0647G1366 Vigna mungo HOM05D003731 ORTHO05D004429 8.9e-97 357.8 313 61.3
MELO3C024281.2 Cucumis melo HOM05D003731 ORTHO05D004429 1.5e-96 357.1 388 53.6
Lsat_1_v5_gn_1_39481 Lactuca sativa HOM05D003731 ORTHO05D004429 2.0e-96 356.7 311 61.7
Nitab4.5_0003757g0080 Nicotiana tabacum HOM05D003731 ORTHO05D004429 3.4e-96 355.9 276 68.1
Hund05680 Selenicereus undatus HOM05D003731 ORTHO05D004429 3.4e-96 355.9 409 52.8
CsaV3_7G033680 Cucumis sativus L. HOM05D003731 ORTHO05D004429 5.8e-96 355.1 388 53.1
Ciclev10025825m.g Citrus clementina HOM05D003731 ORTHO05D004429 7.6e-96 354.8 401 53.4
Thhalv10011555m.g Eutrema salsugineum HOM05D003731 ORTHO05D004429 2.2e-95 353.2 273 65.2
FAN14G5835 Fragaria x ananassa HOM05D003731 ORTHO05D004429 2.2e-95 353.2 301 62.8
Phvul.008G254200 Phaseolus vulgaris HOM05D003731 ORTHO05D004429 2.2e-95 353.2 314 61.8
Sp3g19100 Schrenkiella parvula HOM05D003731 ORTHO05D004429 3.8e-95 352.4 412 52.2
Carub.0001s4041 Capsella rubella HOM05D003731 ORTHO05D004429 4.9e-95 352.1 274 63.9
Thhalv10020874m.g Eutrema salsugineum HOM05D003731 ORTHO05D004429 4.9e-95 352.1 402 51.5
Glyma.08G221400 Glycine max HOM05D003731 ORTHO05D004429 4.9e-95 352.1 271 67.5
Sp1g38210 Schrenkiella parvula HOM05D003731 ORTHO05D004429 4.9e-95 352.1 389 51.2
BcaB02g11256 Brassica carinata HOM05D003731 ORTHO05D004429 1.1e-94 350.9 340 55.0
Glyma.07G020600 Glycine max HOM05D003731 ORTHO05D004429 1.1e-94 350.9 271 67.5
PGR102G1715 Punica granatum HOM05D003731 ORTHO05D004429 1.9e-94 350.1 303 61.7
Sabra08G0003400 Salix brachista HOM05D003731 ORTHO05D004429 1.9e-94 350.1 402 51.2
FAN05G3538 Fragaria x ananassa HOM05D003731 ORTHO05D004429 2.4e-94 349.7 296 62.8
Aa31LG8G7840 Aethionema arabicum HOM05D003731 ORTHO05D004429 7.1e-94 348.2 343 55.1
Peaxi162Scf00038g02535 Petunia axillaris HOM05D003731 ORTHO05D004429 9.2e-94 347.8 294 63.3
ATR0626G101 Amborella trichopoda HOM05D003731 ORTHO05D004429 1.2e-93 347.4 415 48.9
EL10Ac7g18173 Beta vulgaris HOM05D003731 ORTHO05D004429 1.2e-93 347.4 405 50.6
C05p42680 Brassica napus HOM05D003731 ORTHO05D004429 2.7e-93 346.3 342 55.3
BolC5t32990H Brassica oleracea HOM05D003731 ORTHO05D004429 2.7e-93 346.3 342 55.3
BcaC05g28253 Brassica carinata HOM05D003731 ORTHO05D004429 3.5e-93 345.9 341 55.4
BcaB06g26184 Brassica carinata HOM05D003731 ORTHO05D004429 4.6e-93 345.5 342 55.6
BolC6t36470H Brassica oleracea HOM05D003731 ORTHO05D004429 4.6e-93 345.5 340 54.4
BraA01t03485Z Brassica rapa HOM05D003731 ORTHO05D004429 4.6e-93 345.5 341 56.0
BraA05t21647Z Brassica rapa HOM05D003731 ORTHO05D004429 4.6e-93 345.5 336 56.0
Aqoxy7G02835 Aquilegia oxysepala HOM05D003731 ORTHO05D004429 6.0e-93 345.1 334 57.8
AT3G21140 Arabidopsis thaliana HOM05D003731 ORTHO05D004429 6.0e-93 345.1 399 51.6
BcaC08g43921 Brassica carinata HOM05D003731 ORTHO05D004429 6.0e-93 345.1 340 54.7
A05p27580 Brassica napus HOM05D003731 ORTHO05D004429 6.0e-93 345.1 337 56.1
BraA05t20855Z Brassica rapa HOM05D003731 ORTHO05D004429 7.8e-93 344.7 331 55.0
Nn8g40740 Nelumbo nucifera HOM05D003731 ORTHO05D004429 7.8e-93 344.7 276 64.9
Duzib192G0075 Durio zibethinus HOM05D003731 ORTHO05D004429 1.7e-92 343.6 401 52.1
HanXRQChr02g0032091 Helianthus annuus HOM05D003731 ORTHO05D004429 1.7e-92 343.6 266 66.9
AL3G35080 Arabidopsis lyrata HOM05D003731 ORTHO05D004429 2.3e-92 343.2 397 50.9
C06p13140 Brassica napus HOM05D003731 ORTHO05D004429 2.3e-92 343.2 340 54.1
C01p43100 Brassica napus HOM05D003731 ORTHO05D004429 6.6e-92 341.7 398 50.0
BcaC09g49052 Brassica carinata HOM05D003731 ORTHO05D004429 2.5e-91 339.7 398 50.3
BolC1t04257H Brassica oleracea HOM05D003731 ORTHO05D004429 3.3e-91 339.3 399 49.4
A01p33720 Brassica napus HOM05D003731 ORTHO05D004429 7.3e-91 338.2 356 53.9
A05p19510 Brassica napus HOM05D003731 ORTHO05D004429 7.3e-91 338.2 331 54.1
C03p51470 Brassica napus HOM05D003731 ORTHO05D004429 1.6e-90 337.0 393 51.1
PSO170G0363 Papaver somniferum HOM05D003731 ORTHO05D004429 1.6e-90 337.0 336 56.5
PSO063G0738 Papaver somniferum HOM05D003731 ORTHO05D004429 3.6e-90 335.9 273 64.5
BcaB04g19144 Brassica carinata HOM05D003731 ORTHO05D004429 6.2e-90 335.1 391 51.4
CARHR097000 Cardamine hirsuta HOM05D003731 ORTHO05D004429 1.4e-89 334.0 338 54.4
Os08g0517500 Oryza sativa ssp. japonica HOM05D003731 ORTHO05D004429 1.8e-89 333.6 360 52.8
CDE05G0113 Ceratophyllum demersum HOM05D003731 ORTHO05D004429 2.4e-89 333.2 337 56.7
HanXRQChr10g0311171 Helianthus annuus HOM05D003731 ORTHO05D004429 5.2e-89 332.0 388 49.2
CDE05G0121 Ceratophyllum demersum HOM05D003731 ORTHO05D004429 6.9e-89 331.6 337 56.4
ClCG09G001660 Citrullus lanatus HOM05D003731 ORTHO05D004429 1.2e-88 330.9 394 51.5
A03p42050 Brassica napus HOM05D003731 ORTHO05D004429 1.5e-88 330.5 395 50.9
Peaxi162Scf00207g01628 Petunia axillaris HOM05D003731 ORTHO05D004429 1.5e-88 330.5 252 68.3
BcaC01g03525 Brassica carinata HOM05D003731 ORTHO05D004429 5.8e-88 328.6 393 49.6
BolC3t17432H Brassica oleracea HOM05D003731 ORTHO05D004429 5.8e-88 328.6 393 49.6
BraA03t13359Z Brassica rapa HOM05D003731 ORTHO05D004429 5.8e-88 328.6 393 50.1
SEGI_04052 Sequoiadendron giganteum HOM05D003731 ORTHO05D004429 5.8e-88 328.6 336 54.8
COL.COLO4_31180 Corchorus olitorius HOM05D003731 ORTHO05D004429 2.9e-87 326.2 389 50.6
FAN02G2868 Fragaria x ananassa HOM05D003731 ORTHO05D004429 3.8e-87 325.9 309 58.9
ECA234G1217 Erigeron canadensis HOM05D003731 ORTHO05D004429 9.3e-86 321.2 396 48.5
Nitab4.5_0001691g0190 Nicotiana tabacum HOM05D003731 ORTHO05D004429 3.5e-85 319.3 405 47.7
Zm00001eb035800 Zea mays HOM05D003731 ORTHO05D004429 4.6e-85 318.9 319 55.5
Gohir.A02G090300 Gossypium hirsutum HOM05D003731 ORTHO05D004429 7.8e-85 318.2 308 56.8
Lsat_1_v5_gn_5_137321 Lactuca sativa HOM05D003731 ORTHO05D004429 2.3e-84 316.6 387 48.6
Cpa.g.sc461.2 Carica papaya HOM05D003731 ORTHO05D004429 1.5e-83 313.9 398 49.5
HPP92_028311 Vanilla planifolia HOM05D003731 ORTHO05D004429 1.9e-83 313.5 265 61.1
Os02g0148400 Oryza sativa ssp. japonica HOM05D003731 ORTHO05D004429 1.3e-82 310.8 338 51.2
TPR.G24561 Trifolium pratense HOM05D003731 ORTHO05D004429 6.2e-82 308.5 190 79.5
Hund18606 Selenicereus undatus HOM05D003731 ORTHO05D004429 9.0e-81 304.7 408 49.3
Sc12g0011120 Simmondsia chinensis HOM05D003731 ORTHO05D004429 2.6e-80 303.1 370 50.5
Zm00001eb232310 Zea mays HOM05D003731 ORTHO05D004429 7.6e-80 301.6 304 53.6
Sabra10G0196300 Salix brachista HOM05D003731 ORTHO05D004429 1.4e-78 297.4 449 43.7
BcaB04g20609 Brassica carinata HOM05D003731 ORTHO05D004429 2.4e-78 296.6 277 56.7
MBI16_g05829_MAGBIO Magnolia biondii HOM05D003731 ORTHO05D004429 9.3e-78 294.7 365 47.7
HPP92_010289 Vanilla planifolia HOM05D003731 ORTHO05D004429 9.3e-78 294.7 393 48.1
Oeu049642.2 Olea europaea HOM05D003731 ORTHO05D004429 3.5e-77 292.7 173 80.3
Pp3c19_5780 Physcomitrium patens HOM05D003731 ORTHO05D004429 5.1e-76 288.9 271 56.5
Mapoly0153s0003 Marchantia polymorpha HOM05D003731 ORTHO05D004429 1.1e-73 281.2 264 54.5
Pp3c18_21250 Physcomitrium patens HOM05D003731 ORTHO05D004429 2.4e-73 280.0 271 55.4
AagrBONN_evm.TU.Sc2ySwM_228.2381 Anthoceros agrestis HOM05D003731 ORTHO05D004429 1.9e-70 270.4 270 51.5
SMO364G0508 Selaginella moellendorffii HOM05D003731 ORTHO05D004429 1.8e-68 263.8 256 53.9
AUR62001353 Chenopodium quinoa HOM05D003731 ORTHO05D004429 3.9e-68 262.7 273 55.3
AUR62025651 Chenopodium quinoa HOM05D003731 ORTHO05D004429 2.5e-67 260.0 271 55.0
Ah.08g217760 Amaranthus hybridus HOM05D003731 ORTHO05D008196 3.1e-65 253.1 368 44.3
SEGI_29649 Sequoiadendron giganteum HOM05D003731 ORTHO05D004429 5.8e-64 248.8 266 50.8
BcaNung05301 Brassica carinata HOM05D003731 ORTHO05D004429 1.1e-62 244.6 399 41.1
CBR_g66806 Chara braunii HOM05D003731 ORTHO05D004429 5.1e-60 235.7 275 48.7
Lsat_1_v5_gn_8_80840 Lactuca sativa HOM05D003731 ORTHO05D004429 4.8e-58 229.2 142 74.6
Carub.0003s2104 Capsella rubella HOM05D003731 ORTHO05D004429 1.1e-57 228.0 315 46.3
BcaC08g44499 Brassica carinata HOM05D003731 ORTHO05D004429 9.0e-57 224.9 126 83.3
C06p19510 Brassica napus HOM05D003731 ORTHO05D004429 9.0e-57 224.9 126 83.3
BraA02t08409Z Brassica rapa HOM05D003731 ORTHO05D004429 7.6e-56 221.9 126 83.3
arahy.Tifrunner.gnm1.ann1.7JFF3X Arachis hypogaea HOM05D003731 ORTHO05D004429 1.1e-51 208.0 171 64.3
HPP92_028546 Vanilla planifolia HOM05D003731 ORTHO05D004429 9.7e-51 204.9 192 55.7
Haze_16281 Corylus avellana HOM05D003731 ORTHO05D004429 1.0e-47 194.9 120 79.2
PGSC0003DMG402026514 Solanum tuberosum HOM05D003731 ORTHO05D004429 1.9e-46 190.7 116 79.3
Lj5A23G26 Lonicera japonica HOM05D003731 ORTHO05D004429 2.7e-45 186.8 117 78.6
Lj5A24T51 Lonicera japonica HOM05D003731 ORTHO05D004429 5.1e-44 182.6 246 46.7
Ah.15g094360 Amaranthus hybridus HOM05D003731 ORTHO05D004429 3.1e-41 173.3 262 43.1
SEGI_14249 Sequoiadendron giganteum HOM05D003731 ORTHO05D004429 4.1e-41 172.9 116 73.3
Cre12.g520200 Chlamydomonas reinhardtii HOM05D003731 ORTHO05D004429 6.1e-37 159.1 368 33.2
PRCOL_00002787 Prasinoderma coloniale HOM05D003731 ORTHO05D004429 7.0e-33 145.6 276 33.3
MCO09G402 Micromonas commoda HOM05D003731 ORTHO05D004429 1.2e-27 128.3 227 37.0
HPP92_015382 Vanilla planifolia HOM05D003731 ORTHO05D004429 2.2e-23 114.0 74 75.7
MCO13G417 Micromonas commoda HOM05D003731 ORTHO05D004429 3.6e-21 106.7 239 30.1
Haze_16282 Corylus avellana HOM05D003731 ORTHO05D004429 3.0e-20 103.6 172 47.1
TPR.G3353 Trifolium pratense HOM05D003731 ORTHO05D004429 3.8e-15 86.7 134 44.8
Psat7g260640 Pisum sativum HOM05D003731 ORTHO05D004429 2.5e-14 84.0 141 43.3
CARHR113330 Cardamine hirsuta HOM05D003731 ORTHO05D004429 4.2e-14 83.2 62 67.7
Carub.0043s0002 Capsella rubella HOM05D003731 ORTHO05D004429 1.6e-13 81.3 311 30.2
MBI16_g10347_MAGBIO Magnolia biondii HOM05D003731 ORTHO05D004429 1.5e-11 74.7 43 86.0
BcaB04g20502 Brassica carinata HOM05D003731 ORTHO05D004429 2.4e-09 67.4 164 36.0
MCO02G120 Micromonas commoda HOM05D006013 ORTHO05D007383 4.1e-09 66.6 148 31.1
HPP92_028043 Vanilla planifolia HOM05D003731 ORTHO05D004429 1.2e-08 65.1 37 86.5
PRCOL_00004085 Prasinoderma coloniale HOM05D006013 ORTHO05D007383 2.9e-07 60.5 199 25.6


User provided reference genes

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