Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 7.1e-235 817.0 449 100.0
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 6.0e-157 558.1 560 63.4
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 2.9e-151 539.3 555 61.1
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 4.6e-141 505.4 554 59.2
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 9.0e-137 491.1 574 56.1
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 3.4e-136 489.2 589 53.8
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 3.4e-136 489.2 545 59.8
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 4.2e-134 482.3 371 74.1
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 1.3e-132 477.2 427 70.3
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 3.9e-132 475.7 540 59.6
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 4.3e-131 472.2 487 60.8
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 9.6e-131 471.1 572 57.7
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 2.1e-130 469.9 306 79.1
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 8.1e-130 468.0 549 58.7
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 1.4e-129 467.2 383 72.6
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 1.4e-129 467.2 363 73.6
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 1.8e-129 466.8 577 56.0
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 2.0e-128 463.4 378 73.0
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 4.5e-128 462.2 379 72.0
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 1.2e-125 454.1 557 57.3
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 2.1e-125 453.4 358 74.3
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 2.7e-125 453.0 439 63.6
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 3.5e-125 452.6 565 56.3
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 1.3e-124 450.7 370 71.6
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 3.9e-124 449.1 324 75.0
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 5.1e-124 448.7 368 71.2
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 6.7e-124 448.4 445 63.6
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 6.7e-124 448.4 349 74.8
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 8.7e-124 448.0 349 72.8
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 1.1e-123 447.6 368 70.7
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 9.6e-123 444.5 569 54.8
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 1.3e-122 444.1 351 72.4
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 2.1e-122 443.4 475 58.5
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 8.2e-122 441.4 447 62.6
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 1.1e-121 441.0 357 71.7
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 1.8e-121 440.3 325 72.3
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 2.4e-121 439.9 303 76.6
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 4.0e-121 439.1 348 71.8
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 5.3e-121 438.7 438 61.0
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 6.9e-121 438.3 437 64.1
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 4.5e-120 435.6 427 63.0
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 5.8e-120 435.3 442 62.0
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 1.3e-119 434.1 326 71.5
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 1.3e-119 434.1 371 68.5
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 2.5e-118 429.9 357 68.3
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 9.3e-118 427.9 542 54.4
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.6e-117 427.2 351 69.5
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 2.1e-117 426.8 321 72.9
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 4.6e-117 425.6 426 62.2
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 4.6e-117 425.6 395 66.3
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 1.3e-116 424.1 318 71.4
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 1.8e-116 423.7 551 52.5
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 2.3e-116 423.3 357 69.2
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 3.3e-115 419.5 437 57.4
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 9.7e-115 417.9 541 54.0
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 2.8e-114 416.4 313 70.9
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 6.3e-114 415.2 482 55.0
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 5.3e-113 412.1 304 74.0
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 5.3e-113 412.1 303 71.0
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 1.2e-112 411.0 376 66.8
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 1.2e-112 411.0 318 69.5
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 1.5e-112 410.6 304 73.7
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 2.0e-112 410.2 424 60.6
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 4.5e-112 409.1 426 59.9
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 5.9e-112 408.7 313 72.2
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 5.9e-112 408.7 449 58.4
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 2.2e-111 406.8 359 66.9
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 1.9e-110 403.7 332 67.8
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 1.6e-109 400.6 404 61.9
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 1.6e-109 400.6 404 61.9
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 7.9e-109 398.3 371 66.0
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 1.0e-108 397.9 307 69.4
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 1.0e-108 397.9 351 67.5
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 1.4e-108 397.5 446 55.8
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 3.0e-108 396.4 444 60.4
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 3.0e-108 396.4 522 53.1
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 3.9e-108 396.0 408 63.2
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 1.7e-106 390.6 373 65.1
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 1.5e-104 384.0 535 48.4
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 5.9e-104 382.1 425 59.8
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 2.5e-102 376.7 357 62.5
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 2.1e-101 373.6 294 73.8
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 2.1e-101 373.6 424 57.1
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 6.1e-101 372.1 358 62.0
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 8.8e-100 368.2 441 55.6
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 1.1e-97 361.3 322 63.0
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 1.4e-97 360.9 333 62.2
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 1.2e-96 357.8 412 59.0
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 3.5e-96 356.3 340 61.2
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 5.9e-96 355.5 356 62.1
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 5.0e-95 352.4 356 61.8
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 5.0e-95 352.4 356 61.8
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 1.4e-94 350.9 314 63.4
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 1.9e-94 350.5 336 63.7
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 7.2e-94 348.6 315 63.5
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 6.1e-93 345.5 410 55.4
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 1.4e-92 344.4 422 53.6
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 1.1e-91 341.3 356 59.8
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 1.8e-89 334.0 219 81.7
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 6.1e-85 318.9 361 59.3
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 2.7e-80 303.5 241 66.4
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 1.9e-78 297.4 214 73.8
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 4.7e-77 292.7 212 72.2
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.3e-71 274.6 229 71.2
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 4.7e-69 266.2 401 48.6
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 8.9e-68 261.9 211 69.2
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 7.5e-67 258.8 243 58.4
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 7.0e-65 252.3 243 58.8
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 2.0e-64 250.8 239 58.6
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 2.7e-64 250.4 244 54.5
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 1.8e-60 237.7 274 51.1
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 2.3e-60 237.3 235 59.1
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 7.5e-59 232.3 313 45.7
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 8.0e-53 212.2 323 42.1
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 1.9e-49 201.1 171 62.6
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 1.0e-47 195.3 243 51.4
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 3.7e-42 176.8 231 45.9
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 1.6e-40 171.4 290 40.3
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 2.7e-40 170.6 274 42.3
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 6.0e-40 169.5 205 46.3
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 1.5e-35 154.8 358 42.2
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 4.6e-32 143.3 105 70.5
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 4.6e-32 143.3 155 51.0
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 9.6e-30 135.6 195 44.1
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 6.6e-23 112.8 74 78.4
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 5.6e-22 109.8 109 57.8
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 3.4e-19 100.5 152 53.3
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 1.9e-17 94.7 91 54.9
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 2.3e-15 87.8 133 42.9
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 3.3e-14 84.0 222 36.9
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 3.3e-14 84.0 152 38.2
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 2.0e-11 74.7 91 52.7
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 5.8e-11 73.2 76 63.2
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 3.8e-10 70.5 61 50.8
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 3.8e-10 70.5 42 83.3
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 1.9e-09 68.2 115 40.0
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 2.5e-09 67.8 39 82.1
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 2.5e-09 67.8 39 82.1
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 2.5e-09 67.8 39 82.1
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 5.5e-09 66.6 46 65.2
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 9.3e-09 65.9 44 70.5
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 1.6e-08 65.1 39 79.5
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 1.6e-08 65.1 48 68.8
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 2.1e-08 64.7 115 37.4
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 4.6e-08 63.5 251 28.7
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 1.3e-07 62.0 244 31.1
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 1.3e-07 62.0 113 39.8
QL03p033134 Quercus lobata HOM05D004479 ORTHO05D005597 6.7e-07 59.7 50 70.0
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 8.7e-07 59.3 51 49.0
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 1.1e-06 58.9 54 59.3
Cpa.g.sc1515.1 Carica papaya HOM05D004479 ORTHO05D005597 1.9e-06 58.2 90 63.3
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 2.5e-06 57.8 40 77.5
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 2.5e-06 57.8 40 77.5
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 2.5e-06 57.8 40 77.5


User provided reference genes

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