Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 1.1e-118 429.9 208 100.0
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 2.1e-80 302.8 178 76.4
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 4.0e-79 298.5 178 75.8
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 8.2e-77 290.8 174 73.6
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 3.8e-74 282.0 169 74.0
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 3.2e-73 278.9 170 72.9
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 1.2e-72 276.9 168 73.8
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 1.6e-72 276.6 172 73.3
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 8.0e-72 274.2 168 73.2
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.0e-71 273.9 173 71.1
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 5.7e-70 268.1 167 71.9
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 2.2e-69 266.2 173 69.9
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 4.8e-69 265.0 163 71.2
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 1.1e-68 263.8 173 71.1
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 1.4e-68 263.5 161 75.8
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 1.4e-68 263.5 162 72.2
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.8e-68 263.1 162 72.8
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 7.0e-68 261.2 162 71.6
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 1.6e-67 260.0 162 71.6
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 1.6e-67 260.0 167 70.7
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 2.0e-67 259.6 170 70.0
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 2.7e-67 259.2 172 70.9
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 3.5e-67 258.8 163 70.6
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 3.5e-67 258.8 165 70.3
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 7.7e-67 257.7 174 67.8
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 7.7e-67 257.7 164 69.5
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 1.7e-66 256.5 161 70.2
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 2.9e-66 255.8 173 71.1
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 2.9e-66 255.8 187 64.2
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 5.0e-66 255.0 165 69.1
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 6.6e-66 254.6 166 72.3
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 1.1e-65 253.8 171 69.0
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 1.5e-65 253.4 173 68.8
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 2.5e-65 252.7 166 70.5
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 2.5e-65 252.7 163 73.0
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 4.2e-65 251.9 163 69.9
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 9.5e-65 250.8 164 69.5
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 1.2e-64 250.4 162 69.1
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 2.1e-64 249.6 163 68.7
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 2.8e-64 249.2 171 66.7
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 6.1e-64 248.1 164 68.9
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 6.1e-64 248.1 169 67.5
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 8.0e-64 247.7 163 68.7
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 8.0e-64 247.7 163 71.8
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 2.3e-63 246.1 173 67.1
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 4.0e-63 245.4 166 67.5
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 8.9e-63 244.2 165 70.9
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 1.5e-62 243.4 165 69.7
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 1.5e-62 243.4 169 68.0
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 1.5e-62 243.4 163 66.3
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 2.0e-62 243.0 163 71.2
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.0e-62 243.0 163 71.2
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 2.6e-62 242.7 161 68.3
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 3.4e-62 242.3 165 66.1
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 3.4e-62 242.3 164 64.0
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 3.4e-62 242.3 170 68.2
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 4.4e-62 241.9 164 67.7
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 5.7e-62 241.5 165 68.5
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 5.7e-62 241.5 168 67.9
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 9.8e-62 240.7 166 70.5
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 2.2e-61 239.6 165 69.7
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 2.2e-61 239.6 165 64.8
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 2.8e-61 239.2 165 69.7
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.1e-60 237.3 182 63.7
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 1.1e-60 237.3 163 65.0
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 1.8e-60 236.5 165 67.9
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 1.8e-60 236.5 165 67.9
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.1e-60 235.7 174 65.5
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 4.1e-60 235.3 170 67.1
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 5.4e-60 235.0 164 66.5
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 7.0e-60 234.6 166 63.9
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 9.2e-60 234.2 165 69.1
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 9.2e-60 234.2 174 65.5
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 1.2e-59 233.8 165 67.3
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 1.6e-59 233.4 165 63.6
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 2.0e-59 233.0 166 65.7
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 1.0e-58 230.7 175 62.3
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 1.0e-58 230.7 169 63.9
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.3e-58 230.3 166 64.5
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.7e-58 229.9 166 65.7
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 1.7e-58 229.9 162 67.3
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 2.3e-58 229.6 171 64.3
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 2.3e-58 229.6 171 64.3
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 2.9e-58 229.2 181 59.7
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 3.8e-58 228.8 169 62.7
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.5e-57 226.1 176 61.4
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 2.5e-57 226.1 169 62.1
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 3.3e-57 225.7 165 66.7
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 4.3e-57 225.3 154 66.9
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 5.6e-57 224.9 175 60.6
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 2.1e-56 223.0 183 57.9
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.0e-55 220.7 166 64.5
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 3.1e-55 219.2 165 60.6
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 4.0e-55 218.8 166 63.9
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 4.0e-55 218.8 146 68.5
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 6.8e-55 218.0 175 59.4
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.5e-54 216.9 161 65.8
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 4.4e-54 215.3 165 61.2
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 5.8e-54 214.9 159 64.2
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 7.5e-54 214.5 161 59.0
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 6.4e-53 211.5 194 58.2
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 8.3e-53 211.1 171 57.9
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 1.4e-52 210.3 160 60.0
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 1.9e-52 209.9 163 60.1
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 2.4e-52 209.5 162 59.3
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 3.5e-51 205.7 178 54.5
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 6.0e-51 204.9 165 60.6
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 7.8e-51 204.5 163 62.0
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 5.6e-49 198.4 113 74.3
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 9.8e-46 187.6 169 55.6
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 1.7e-45 186.8 164 51.2
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.4e-45 184.9 163 52.8
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.4e-45 184.9 161 53.4
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.4e-44 183.7 163 52.1
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.1e-44 182.2 163 53.4
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 5.4e-44 181.8 181 49.2
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 6.6e-42 174.9 118 67.8
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.9e-41 173.3 147 56.5
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 8.1e-40 167.9 114 64.9
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 3.1e-39 166.0 114 64.9
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 2.6e-38 162.9 114 58.8
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 3.4e-38 162.5 122 60.7
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.1e-36 157.5 131 55.0
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 7.8e-35 151.4 111 62.2
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.6e-34 147.9 120 57.5
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 1.1e-33 147.5 165 46.7
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 7.3e-33 144.8 120 56.7
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.3e-33 144.8 162 46.3
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 5.8e-30 135.2 163 46.6
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 2.2e-29 133.3 162 43.8
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 7.1e-28 128.3 93 62.4
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 4.3e-25 119.0 116 49.1
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.6e-22 109.8 100 50.0
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 9.9e-22 107.8 175 35.4
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 7.1e-20 101.7 64 70.3
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 9.9e-14 81.3 44 84.1
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 5.4e-12 75.5 53 64.2
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 1.2e-11 74.3 49 67.3
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.9e-11 71.6 53 62.3
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 3.0e-10 69.7 47 68.1
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 1.1e-09 67.8 47 63.8
SEGI_21412 Sequoiadendron giganteum HOM05D005240 ORTHO05D006471 1.2e-06 57.8 46 54.3


User provided reference genes

Program Settings