Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 5.0e-217 757.7 438 100.0
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 1.5e-120 437.2 424 62.3
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 1.2e-112 411.0 433 60.5
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 3.3e-99 366.3 432 55.6
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 2.9e-87 326.6 450 50.7
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 7.3e-83 312.0 412 46.6
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 4.7e-82 309.3 431 49.0
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 8.9e-81 305.1 427 48.0
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 7.5e-80 302.0 433 48.3
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 7.5e-80 302.0 433 46.0
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 1.3e-79 301.2 430 47.2
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 4.9e-79 299.3 431 49.9
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 4.9e-79 299.3 434 47.7
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 1.6e-77 294.3 428 50.2
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 2.5e-75 287.0 429 47.6
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 2.5e-75 287.0 431 46.9
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 3.3e-75 286.6 430 46.7
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 8.1e-74 282.0 426 47.2
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.3e-73 280.4 441 44.9
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 4.0e-73 279.6 439 44.9
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 3.7e-71 273.1 470 39.4
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 3.7e-71 273.1 451 44.1
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 4.9e-71 272.7 453 41.9
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 6.4e-71 272.3 434 48.4
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 8.3e-71 271.9 438 43.4
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 8.3e-71 271.9 423 46.3
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 5.4e-70 269.2 433 40.2
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 9.2e-70 268.5 431 40.6
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 2.7e-69 266.9 452 43.8
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 1.3e-68 264.6 436 41.5
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 1.7e-68 264.2 468 40.8
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 3.0e-68 263.5 433 48.3
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 5.1e-68 262.7 439 43.5
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 6.6e-68 262.3 419 46.3
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.5e-67 261.2 445 43.8
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 3.3e-67 260.0 421 45.8
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 3.3e-67 260.0 447 43.6
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 3.3e-67 260.0 427 42.2
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 4.3e-67 259.6 423 42.8
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 7.3e-67 258.8 427 42.4
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 9.6e-67 258.5 425 44.7
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 1.2e-66 258.1 424 43.4
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 1.6e-66 257.7 428 47.2
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 2.1e-66 257.3 424 41.3
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 2.8e-66 256.9 423 42.8
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 4.7e-66 256.1 430 43.7
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 8.1e-66 255.4 439 45.6
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.8e-65 254.2 434 44.5
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 4.0e-65 253.1 427 45.9
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 6.8e-65 252.3 410 42.7
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 2.6e-64 250.4 426 44.6
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 3.4e-64 250.0 430 41.4
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 4.4e-64 249.6 451 43.5
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 5.8e-64 249.2 429 42.7
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 7.6e-64 248.8 412 45.6
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 1.7e-63 247.7 418 45.0
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 1.7e-63 247.7 429 44.1
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.4e-62 244.6 432 41.7
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.9e-62 244.2 430 43.0
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 2.4e-62 243.8 518 38.6
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 4.2e-62 243.0 430 43.7
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 5.4e-62 242.7 430 43.5
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 1.2e-61 241.5 432 41.9
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.6e-61 241.1 432 43.1
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 2.1e-61 240.7 425 42.4
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 7.8e-61 238.8 311 50.2
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 3.0e-60 236.9 414 41.3
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 3.0e-60 236.9 507 39.4
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 3.9e-60 236.5 425 42.4
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 5.1e-60 236.1 428 41.6
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 3.3e-59 233.4 419 41.3
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 7.3e-59 232.3 428 44.4
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 7.3e-59 232.3 412 42.2
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 1.6e-58 231.1 413 39.2
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 2.1e-58 230.7 408 39.2
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 1.4e-57 228.0 407 40.0
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 4.0e-57 226.5 416 40.4
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 1.2e-56 224.9 417 41.7
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.5e-56 224.6 422 39.6
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 3.4e-56 223.4 418 42.8
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 3.4e-56 223.4 456 40.1
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 5.8e-56 222.6 391 41.9
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 3.8e-55 219.9 427 40.3
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 1.9e-54 217.6 417 39.6
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 1.9e-54 217.6 377 43.8
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.9e-54 217.6 418 38.3
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 2.4e-54 217.2 431 39.0
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 4.2e-54 216.5 420 39.0
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 2.1e-53 214.2 315 49.2
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 2.7e-53 213.8 388 41.2
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 4.6e-53 213.0 405 38.8
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 7.9e-53 212.2 556 36.3
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.0e-52 211.8 422 38.4
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 1.3e-52 211.5 408 37.7
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 1.7e-52 211.1 401 37.7
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 2.3e-52 210.7 430 40.9
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 2.5e-51 207.2 466 37.1
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.3e-51 206.8 412 42.2
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 3.3e-51 206.8 414 40.6
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 3.6e-50 203.4 416 38.5
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 2.4e-49 200.7 413 36.3
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 2.4e-49 200.7 304 45.4
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 4.5e-48 196.4 422 39.3
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 1.3e-47 194.9 260 48.1
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 1.7e-47 194.5 410 38.5
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 4.9e-47 193.0 392 40.8
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 1.4e-46 191.4 398 40.2
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 1.2e-45 188.3 319 45.5
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 1.6e-45 188.0 399 37.8
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 9.0e-41 172.2 146 70.5
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 1.8e-33 147.9 436 35.1
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 1.7e-31 141.4 355 36.9
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 3.2e-30 137.1 459 27.5
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 9.3e-30 135.6 269 38.3
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 2.7e-29 134.0 490 28.0
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.9e-27 127.9 423 30.3
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 5.7e-27 126.3 147 51.7
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 2.4e-25 120.9 293 33.8
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 4.1e-25 120.2 286 37.4
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 1.5e-24 118.2 106 55.7
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.4e-24 117.1 94 62.8
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 1.1e-22 112.1 270 36.7
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 7.2e-22 109.4 306 32.7
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 9.4e-22 109.0 400 29.0
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 6.1e-21 106.3 201 37.8
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 3.7e-18 97.1 71 66.2
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 1.5e-16 91.7 98 48.0
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.6e-16 90.9 76 56.6
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 1.3e-15 88.6 166 39.2
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 3.9e-12 77.0 59 61.0
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 3.9e-12 77.0 66 60.6
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 6.7e-12 76.3 62 64.5
SGA_v2.0_scaffold340G49301 Striga asiatica HOM05D005355 ORTHO05D006591 6.7e-12 76.3 81 59.3
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 7.4e-11 72.8 171 32.7
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.7e-10 71.6 65 61.5
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.6e-08 65.1 62 53.2
SEGI_25872 Sequoiadendron giganteum HOM05D005355 ORTHO05D006591 8.5e-07 59.3 310 29.0


User provided reference genes

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