Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 5.4e-53 210.7 103 100.0
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 1.9e-42 175.6 103 83.5
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 9.5e-42 173.3 103 81.6
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 2.8e-41 171.8 102 83.3
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.4e-40 169.5 98 83.7
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.4e-40 169.5 98 83.7
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 2.9e-38 161.8 102 77.5
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 6.4e-38 160.6 102 73.5
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 7.0e-37 157.1 102 74.5
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.2e-36 156.4 103 72.8
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 1.2e-36 156.4 103 72.8
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 2.7e-36 155.2 104 75.0
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 3.5e-36 154.8 102 72.5
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 7.8e-36 153.7 104 75.0
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 1.3e-35 152.9 102 71.6
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 1.3e-35 152.9 103 69.9
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 1.7e-35 152.5 104 75.0
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 2.3e-35 152.1 104 74.0
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 3.9e-35 151.4 102 74.5
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 5.1e-35 151.0 102 71.6
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 5.1e-35 151.0 102 71.6
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 5.1e-35 151.0 105 74.3
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 6.6e-35 150.6 102 73.5
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 8.6e-35 150.2 104 72.1
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 8.6e-35 150.2 104 75.0
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 8.6e-35 150.2 102 71.6
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 8.6e-35 150.2 103 72.8
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.1e-34 149.8 103 72.8
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 1.1e-34 149.8 105 71.4
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.5e-34 149.4 103 73.8
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.5e-34 149.4 102 72.5
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 1.9e-34 149.1 103 73.8
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 2.5e-34 148.7 103 72.8
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 2.5e-34 148.7 101 71.3
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 3.3e-34 148.3 103 73.8
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 3.3e-34 148.3 103 72.8
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 3.3e-34 148.3 103 70.9
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 4.3e-34 147.9 103 71.8
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 5.6e-34 147.5 103 72.8
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 7.3e-34 147.1 104 72.1
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 7.3e-34 147.1 103 68.0
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 7.3e-34 147.1 103 70.9
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 7.3e-34 147.1 104 72.1
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 7.3e-34 147.1 106 70.8
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 7.3e-34 147.1 103 72.8
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 9.5e-34 146.7 102 72.5
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 9.5e-34 146.7 103 71.8
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 1.2e-33 146.4 103 72.8
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 1.2e-33 146.4 103 72.8
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 1.2e-33 146.4 91 78.0
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 1.2e-33 146.4 102 71.6
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.2e-33 146.4 102 73.5
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 1.6e-33 146.0 106 70.8
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 1.6e-33 146.0 91 76.9
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 2.1e-33 145.6 103 72.8
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 2.1e-33 145.6 104 73.1
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.1e-33 145.6 104 69.2
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 2.8e-33 145.2 104 69.2
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 3.6e-33 144.8 103 70.9
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 6.2e-33 144.1 103 71.8
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 8.1e-33 143.7 101 72.3
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 8.1e-33 143.7 101 72.3
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 8.1e-33 143.7 105 70.5
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 1.1e-32 143.3 102 70.6
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 1.8e-32 142.5 105 68.6
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 1.8e-32 142.5 102 68.6
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 4.0e-32 141.4 102 69.6
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 4.0e-32 141.4 103 70.9
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 4.0e-32 141.4 102 69.6
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 4.0e-32 141.4 102 69.6
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 5.2e-32 141.0 102 70.6
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 5.2e-32 141.0 103 69.9
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 5.2e-32 141.0 106 67.9
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 6.8e-32 140.6 104 66.3
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 8.9e-32 140.2 103 68.0
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 1.2e-31 139.8 105 69.5
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 1.2e-31 139.8 102 70.6
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 1.5e-31 139.4 103 69.9
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 2.0e-31 139.0 107 69.2
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.0e-31 139.0 107 69.2
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 2.0e-31 139.0 106 69.8
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.6e-31 138.7 107 69.2
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 7.5e-31 137.1 107 68.2
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 7.5e-31 137.1 107 68.2
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 9.9e-31 136.7 101 66.3
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 9.9e-31 136.7 100 69.0
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 1.3e-30 136.3 102 68.6
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 1.7e-30 136.0 131 59.5
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 1.7e-30 136.0 99 66.7
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 2.2e-30 135.6 101 68.3
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 2.2e-30 135.6 102 68.6
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 2.2e-30 135.6 102 68.6
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 2.2e-30 135.6 104 68.3
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 2.9e-30 135.2 103 64.1
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 2.9e-30 135.2 102 65.7
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.9e-30 135.2 99 67.7
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 2.9e-30 135.2 105 68.6
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 4.9e-30 134.4 103 68.9
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 8.3e-30 133.7 102 65.7
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.1e-29 133.3 103 63.1
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.4e-29 132.9 105 67.6
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.4e-29 132.1 92 71.7
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 2.4e-29 132.1 102 66.7
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 3.2e-29 131.7 103 66.0
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 5.4e-29 131.0 103 68.0
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 9.2e-29 130.2 93 71.0
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 1.2e-28 129.8 103 65.0
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.2e-28 129.8 91 71.4
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 1.6e-28 129.4 105 61.9
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 3.5e-28 128.3 94 67.0
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 6.0e-28 127.5 93 69.9
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 7.8e-28 127.1 69 79.7
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 7.8e-28 127.1 93 67.7
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 1.0e-27 126.7 108 61.1
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 3.9e-27 124.8 89 70.8
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 6.6e-27 124.0 103 63.1
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 1.1e-26 123.2 95 68.4
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 5.6e-26 120.9 93 69.9
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 6.2e-25 117.5 93 65.6
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 6.2e-25 117.5 93 68.8
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.8e-24 115.9 92 62.0
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.4e-24 115.5 91 67.0
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.4e-24 115.5 94 62.8
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 6.8e-24 114.0 103 61.2
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.5e-23 112.8 95 65.3
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 2.2e-22 109.0 91 59.3
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.2e-22 109.0 112 53.6
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 1.9e-21 105.9 89 57.3
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.0e-19 100.1 50 82.0
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 5.1e-19 97.8 92 59.8
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.1e-18 96.7 77 66.2
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 5.6e-18 94.4 77 63.6
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.6e-17 92.8 97 50.5
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 3.6e-17 91.7 78 64.1
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 3.6e-17 91.7 103 48.5
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 2.0e-15 85.9 82 61.0
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 3.4e-15 85.1 88 52.3
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 3.4e-15 85.1 106 51.9
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 2.2e-14 82.4 79 63.3
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 1.1e-13 80.1 80 61.2
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 1.9e-13 79.3 77 59.7
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 2.4e-13 79.0 79 59.5
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 6.0e-12 74.3 107 40.2
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 2.5e-10 68.9 95 42.1
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 5.6e-10 67.8 40 70.0
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 9.6e-10 67.0 62 48.4
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 3.6e-09 65.1 43 65.1
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 1.4e-08 63.2 50 60.0
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 3.4e-07 58.5 86 37.2
MCO08G099 Micromonas commoda HOM05D004858 ORTHO05D005600 2.2e-06 55.8 95 35.8


User provided reference genes

Program Settings