Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 0.0e+00 1450.3 734 100.0
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1162.1 786 75.2
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1160.2 794 74.8
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1087.8 783 70.2
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1085.5 789 69.2
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1077.4 783 69.7
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1077.0 794 69.3
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1076.6 708 75.0
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 2.5e-311 1071.6 708 74.0
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 7.5e-311 1070.1 786 68.7
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 2.5e-309 1065.1 786 67.8
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 4.2e-309 1064.3 786 67.9
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 4.2e-309 1064.3 711 73.1
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 7.2e-309 1063.5 784 68.9
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 3.6e-308 1061.2 711 73.0
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 7.9e-308 1060.1 710 74.2
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 1.4e-307 1059.3 705 74.3
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 8.8e-307 1056.6 792 68.2
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 1.1e-306 1056.2 710 73.9
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 2.0e-306 1055.4 710 73.8
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 5.7e-306 1053.9 791 67.6
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 2.2e-305 1052.0 789 67.4
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 5.3e-304 1047.3 790 67.5
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 1.5e-303 1045.8 828 65.3
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 2.0e-303 1045.4 784 68.5
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 1.1e-301 1039.6 790 67.6
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 1.1e-301 1039.6 707 71.6
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 1.1e-301 1039.6 785 66.5
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 1.4e-301 1039.3 737 70.6
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 4.2e-301 1037.7 785 67.1
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 2.1e-300 1035.4 796 66.2
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 1.4e-299 1032.7 704 72.9
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 3.0e-299 1031.6 710 71.8
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 6.7e-299 1030.4 716 71.8
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 2.0e-298 1028.9 771 67.8
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 3.3e-298 1028.1 788 66.5
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 7.4e-298 1026.9 784 65.4
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 5.3e-296 1020.8 785 65.6
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 7.0e-296 1020.4 704 72.6
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 9.1e-296 1020.0 712 70.8
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 1.2e-295 1019.6 791 65.5
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 1.3e-294 1016.1 790 66.7
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 2.9e-294 1015.0 791 65.5
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 6.5e-294 1013.8 789 65.5
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 4.2e-293 1011.1 787 66.2
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 1.2e-292 1009.6 789 65.4
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.1e-292 1008.8 782 65.2
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 3.6e-292 1008.1 787 65.3
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 8.0e-292 1006.9 789 65.1
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 1.0e-291 1006.5 786 64.6
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 1.8e-291 1005.7 789 65.1
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.1e-290 1003.0 782 65.0
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 2.0e-290 1002.3 784 64.5
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 2.0e-290 1002.3 789 64.9
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.4e-290 1001.1 782 64.8
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 7.4e-290 1000.3 793 63.9
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 7.4e-290 1000.3 705 70.6
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 2.2e-289 998.8 786 63.9
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 4.8e-289 997.7 790 64.6
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 6.3e-289 997.3 786 64.8
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 1.1e-288 996.5 706 69.5
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 1.1e-288 996.5 674 73.1
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.8e-288 995.7 704 69.9
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 3.1e-288 995.0 784 64.8
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 5.3e-288 994.2 784 64.9
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 5.3e-288 994.2 784 64.8
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 5.3e-288 994.2 759 66.4
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 9.1e-288 993.4 708 70.9
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 1.6e-287 992.6 787 64.5
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 5.9e-287 990.7 703 70.6
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 7.7e-287 990.3 792 63.8
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 1.7e-286 989.2 779 65.1
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 2.9e-286 988.4 777 65.3
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 5.0e-286 987.6 707 69.0
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 1.9e-285 985.7 709 68.5
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 1.9e-285 985.7 690 72.9
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 4.2e-285 984.6 785 64.1
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 7.2e-285 983.8 815 62.9
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 9.4e-285 983.4 786 64.0
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 2.7e-284 981.9 703 69.3
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 3.6e-284 981.5 719 68.3
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 1.8e-283 979.2 703 69.6
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 2.3e-283 978.8 719 67.7
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 7.5e-282 973.8 706 69.3
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 1.4e-280 969.5 704 69.3
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 7.0e-280 967.2 711 67.5
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 1.6e-279 966.1 714 68.9
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 7.2e-277 957.2 719 66.2
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 7.2e-277 957.2 709 66.0
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 1.2e-276 956.4 703 68.1
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 8.0e-276 953.7 703 67.6
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 8.8e-275 950.3 710 66.9
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 2.2e-273 945.7 707 66.6
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 3.1e-272 941.8 708 66.8
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.0e-270 936.8 645 72.6
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 8.6e-270 933.7 673 69.7
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 2.5e-269 932.2 787 62.5
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 4.0e-267 924.9 689 68.1
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 6.8e-267 924.1 711 66.9
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 1.2e-260 903.3 714 64.1
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 2.9e-257 892.1 711 65.5
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 2.9e-249 865.5 711 61.9
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 8.1e-244 847.4 784 58.2
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 2.6e-242 842.4 708 58.6
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 3.7e-241 838.6 702 60.5
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 2.4e-232 809.3 574 69.0
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 2.1e-231 806.2 645 62.9
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 3.9e-230 802.0 545 72.8
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 3.2e-216 755.7 570 66.5
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 1.8e-214 750.0 627 59.8
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 2.2e-201 706.4 459 76.0
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 7.7e-186 654.8 516 64.0
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 1.6e-175 620.5 688 51.7
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 4.0e-150 536.2 446 62.3
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 3.7e-140 503.1 388 66.5
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.1e-139 501.5 616 47.2
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.2e-117 428.3 346 60.7
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.1e-112 411.8 286 71.0
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 3.4e-109 400.2 350 59.1
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 1.9e-96 357.8 248 69.0
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 1.5e-69 268.5 260 58.1
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 2.9e-68 264.2 279 52.0
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.1e-62 245.7 227 59.0
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 1.8e-62 245.0 191 63.9
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 1.2e-61 242.3 265 51.3
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 5.0e-44 183.7 161 57.8
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 4.2e-43 180.6 150 62.0
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 3.6e-42 177.6 336 35.4
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 4.7e-42 177.2 118 74.6
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-39 169.1 206 46.6
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.2e-39 168.3 119 68.9
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 6.3e-39 166.8 111 73.0
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 5.4e-38 163.7 97 77.3
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 2.0e-37 161.8 171 49.1
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 4.7e-34 150.6 95 71.6
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 4.1e-30 137.5 98 70.4
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 3.3e-27 127.9 104 61.5
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 8.9e-25 119.8 155 45.2
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 8.3e-23 113.2 121 49.6
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 5.4e-22 110.5 86 65.1
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.1e-18 98.6 137 43.1
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.2e-16 92.8 59 71.2
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 6.4e-15 87.0 77 57.1
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 8.6e-12 76.6 78 53.8
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.1e-11 76.3 78 53.8
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 3.3e-11 74.7 61 60.7
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.2e-10 72.8 45 73.3
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 8.9e-09 66.6 37 70.3
Lsat_1_v5_gn_1_82200 Lactuca sativa HOM05D002111 ORTHO05D002160 4.9e-07 60.8 57 56.1


User provided reference genes

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