Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold121G33056 Striga asiatica HOM05D005907 ORTHO05D007033 2.3e-99 365.5 183 100.0
Migut.A00472 Erythranthe guttata HOM05D005907 ORTHO05D007033 2.2e-49 199.5 180 58.3
Oeu047809.2 Olea europaea HOM05D005907 ORTHO05D007033 2.8e-44 182.6 182 51.6
Oeu046770.1 Olea europaea HOM05D005907 ORTHO05D007033 1.2e-42 177.2 185 52.4
MSTRG.25750 Avicennia marina HOM05D005907 ORTHO05D007033 5.8e-42 174.9 182 53.8
SalBow4G0438 Salvia bowleyana HOM05D005907 ORTHO05D007033 1.6e-39 166.8 189 52.9
SalBow8G0159 Salvia bowleyana HOM05D005907 ORTHO05D007033 1.3e-38 163.7 184 51.6
Cc08_g05990 Coffea canephora HOM05D005907 ORTHO05D007033 1.5e-37 160.2 179 49.2
Actinidia01244 Actinidia chinensis HOM05D005907 ORTHO05D007033 1.1e-35 154.1 179 45.8
Atru.chr8.2614 Acer truncatum HOM05D005907 ORTHO05D007033 1.8e-35 153.3 178 47.2
Cfa012308 Carpinus fangiana HOM05D005907 ORTHO05D007033 5.3e-35 151.8 178 45.5
Lj3A1053G42 Lonicera japonica HOM05D005907 ORTHO05D007033 6.9e-35 151.4 175 46.3
TAR636G1547 Trochodendron aralioides HOM05D005907 ORTHO05D007033 2.6e-34 149.4 182 45.6
Rhsim11G0037900 Rhododendron simsii HOM05D005907 ORTHO05D007033 5.8e-34 148.3 183 41.5
CiPaw.11G074000 Carya illinoinensis HOM05D005907 ORTHO05D007033 1.7e-33 146.7 179 45.3
Ciclev10012886m.g Citrus clementina HOM05D005907 ORTHO05D007033 2.9e-33 146.0 183 47.5
TWI60G0533 Tripterygium wilfordii HOM05D005907 ORTHO05D007033 4.9e-33 145.2 179 40.8
CSS0017808 Camellia sinensis var. sinensis HOM05D005907 ORTHO05D007033 6.4e-33 144.8 179 43.0
COL.COLO4_16745 Corchorus olitorius HOM05D005907 ORTHO05D007033 1.1e-32 144.1 172 46.5
Peaxi162Scf00876g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 1.1e-32 144.1 161 49.1
GSVIVG01036890001 Vitis vinifera HOM05D005907 ORTHO05D007033 3.2e-32 142.5 189 41.8
Duzib205G2043 Durio zibethinus HOM05D005907 ORTHO05D007033 2.1e-31 139.8 173 42.8
Glyma.01G153000 Glycine max HOM05D005907 ORTHO05D007033 2.7e-31 139.4 178 44.9
Thecc.03G320600 Theobroma cacao HOM05D005907 ORTHO05D007033 7.9e-31 137.9 178 43.3
Lalb_Chr16g0380441 Lupinus albus HOM05D005907 ORTHO05D007033 1.8e-30 136.7 176 44.9
Medtr5g025640 Medicago truncatula HOM05D005907 ORTHO05D007033 1.8e-30 136.7 172 46.5
Solyc08g075290.2 Solanum lycopersicum HOM05D005907 ORTHO05D007033 2.3e-30 136.3 166 44.6
FvH4_5g24980 Fragaria vesca HOM05D005907 ORTHO05D007033 3.0e-30 136.0 171 43.3
FAN18G3850 Fragaria x ananassa HOM05D005907 ORTHO05D007033 3.0e-30 136.0 171 43.3
RcHm_v2.0_Chr7g0215261 Rosa chinensis HOM05D005907 ORTHO05D007033 3.0e-30 136.0 170 45.3
FAN04G3107 Fragaria x ananassa HOM05D005907 ORTHO05D007033 5.1e-30 135.2 171 42.7
Sopen08g023890 Solanum pennellii HOM05D005907 ORTHO05D007033 5.1e-30 135.2 166 45.2
Lalb_Chr09g0325061 Lupinus albus HOM05D005907 ORTHO05D007033 6.7e-30 134.8 173 44.5
Potri.004G235000 Populus trichocarpa HOM05D005907 ORTHO05D007033 8.7e-30 134.4 181 43.1
PSO339G2078 Papaver somniferum HOM05D005907 ORTHO05D007033 1.1e-29 134.0 171 40.9
VMungo1215G2629 Vigna mungo HOM05D001324 ORTHO05D001220 1.1e-29 134.0 177 41.2
Glyma.09G218300 Glycine max HOM05D005907 ORTHO05D007033 1.5e-29 133.7 174 43.7
Lalb_Chr05g0215181 Lupinus albus HOM05D005907 ORTHO05D007033 1.9e-29 133.3 175 42.3
Gorai.004G176900 Gossypium raimondii HOM05D005907 ORTHO05D007033 2.5e-29 132.9 174 42.0
Gohir.A08G148600 Gossypium hirsutum HOM05D005907 ORTHO05D007033 3.3e-29 132.5 173 41.6
Gohir.D08G169700 Gossypium hirsutum HOM05D005907 ORTHO05D007033 4.3e-29 132.1 173 42.2
FAN08G1334 Fragaria x ananassa HOM05D005907 ORTHO05D007033 5.6e-29 131.7 171 42.7
TPR.G8986 Trifolium pratense HOM05D005907 ORTHO05D007033 5.6e-29 131.7 178 43.3
Hund14310 Selenicereus undatus HOM05D005907 ORTHO05D007033 1.3e-28 130.6 169 46.7
Manes.17G003749 Manihot esculenta HOM05D005907 ORTHO05D007033 1.6e-28 130.2 179 38.0
vmacro00100 Vaccinium macrocarpon HOM05D005907 ORTHO05D007033 2.1e-28 129.8 185 37.8
arahy.Tifrunner.gnm1.ann1.4G5U2W Arachis hypogaea HOM05D005907 ORTHO05D007033 3.7e-28 129.0 184 41.3
arahy.Tifrunner.gnm1.ann1.Y9HS7A Arachis hypogaea HOM05D005907 ORTHO05D007033 3.7e-28 129.0 184 41.3
CAN.G998.7 Capsicum annuum HOM05D005907 ORTHO05D007033 3.7e-28 129.0 157 46.5
Nn3g19120 Nelumbo nucifera HOM05D005907 ORTHO05D007033 3.7e-28 129.0 161 47.8
TAR629G0350 Trochodendron aralioides HOM05D005907 ORTHO05D007033 3.7e-28 129.0 155 48.4
Lj2g0019236 Lotus japonicus HOM05D005907 ORTHO05D007033 8.1e-28 127.9 182 42.3
Phvul.002G122500 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 8.1e-28 127.9 162 42.0
Nitab4.5_0000986g0090 Nicotiana tabacum HOM05D005907 ORTHO05D007033 1.1e-27 127.5 177 41.2
Psat2g145040 Pisum sativum HOM05D005907 ORTHO05D007033 1.1e-27 127.5 178 40.4
Medtr8g072220 Medicago truncatula HOM05D005907 ORTHO05D007033 1.8e-27 126.7 184 40.2
Nn1g09337 Nelumbo nucifera HOM05D005907 ORTHO05D007033 1.8e-27 126.7 183 42.1
Aa31LG2G14390 Aethionema arabicum HOM05D005907 ORTHO05D007033 2.4e-27 126.3 180 38.3
PGR031G0343 Punica granatum HOM05D005907 ORTHO05D007033 3.1e-27 125.9 172 41.9
Prupe.5G013600 Prunus persica HOM05D005907 ORTHO05D007033 5.3e-27 125.2 183 42.6
CANSAT35G1964 Cannabis sativa HOM05D005907 ORTHO05D007033 2.0e-26 123.2 144 47.2
AL1G45790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 9.9e-26 120.9 175 40.6
CARHR031020 Cardamine hirsuta HOM05D005907 ORTHO05D007033 9.9e-26 120.9 179 40.2
Sed0019955 Sechium edule HOM05D005907 ORTHO05D007033 2.2e-25 119.8 170 40.0
Manes.15G184500 Manihot esculenta HOM05D005907 ORTHO05D007033 2.9e-25 119.4 138 39.1
A08p10440 Brassica napus HOM05D005907 ORTHO05D007033 4.9e-25 118.6 154 41.6
PGR042G1103 Punica granatum HOM05D005907 ORTHO05D007033 6.4e-25 118.2 161 46.0
Sp4g03880 Schrenkiella parvula HOM05D005907 ORTHO05D007033 6.4e-25 118.2 168 39.3
Sed0007709 Sechium edule HOM05D005907 ORTHO05D007033 8.4e-25 117.9 166 37.3
BcaC07g37737 Brassica carinata HOM05D005907 ORTHO05D007033 1.1e-24 117.5 165 39.4
BolC8t48118H Brassica oleracea HOM05D005907 ORTHO05D007033 1.1e-24 117.5 165 39.4
Carub.0001s3002 Capsella rubella HOM05D005907 ORTHO05D007033 1.4e-24 117.1 171 39.2
Duzib068G0478 Durio zibethinus HOM05D005907 ORTHO05D007033 1.4e-24 117.1 183 39.3
AL7G34790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 1.9e-24 116.7 152 40.8
Glyma.16G076400 Glycine max HOM05D005907 ORTHO05D007033 1.9e-24 116.7 179 39.7
Thhalv10008873m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 2.4e-24 116.3 173 39.9
BcaNung01784 Brassica carinata HOM05D005907 ORTHO05D007033 3.2e-24 115.9 150 42.0
BraA08t33042Z Brassica rapa HOM05D005907 ORTHO05D007033 3.2e-24 115.9 161 39.8
Carub.0007s2186 Capsella rubella HOM05D005907 ORTHO05D007033 3.2e-24 115.9 152 42.8
Dinv37434 Davidia involucrata HOM05D005907 ORTHO05D007033 3.2e-24 115.9 123 48.0
Sp1g27370 Schrenkiella parvula HOM05D005907 ORTHO05D007033 3.2e-24 115.9 162 39.5
AT4G19370 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 4.2e-24 115.5 152 41.4
BcaB04g18131 Brassica carinata HOM05D005907 ORTHO05D007033 4.2e-24 115.5 150 41.3
CARHR226160 Cardamine hirsuta HOM05D005907 ORTHO05D007033 5.5e-24 115.2 154 40.9
THA.LOC104806200 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 7.1e-24 114.8 159 39.6
MD06G1011300 Malus domestica HOM05D005907 ORTHO05D007033 9.3e-24 114.4 187 38.5
HanXRQChr08g0233691 Helianthus annuus HOM05D005907 ORTHO05D007033 1.2e-23 114.0 176 41.5
Gohir.D12G203800 Gossypium hirsutum HOM05D005907 ORTHO05D007033 1.6e-23 113.6 173 38.2
Gorai.008G218600 Gossypium raimondii HOM05D005907 ORTHO05D007033 1.6e-23 113.6 173 38.2
BcaC09g51418 Brassica carinata HOM05D005907 ORTHO05D007033 3.5e-23 112.5 176 36.4
C01p13330 Brassica napus HOM05D005907 ORTHO05D007033 3.5e-23 112.5 176 36.4
BolC1t01308H Brassica oleracea HOM05D005907 ORTHO05D007033 3.5e-23 112.5 176 36.4
AT1G31720 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 1.0e-22 110.9 171 37.4
A01p11320 Brassica napus HOM05D005907 ORTHO05D007033 1.0e-22 110.9 176 35.8
BraA01t01076Z Brassica rapa HOM05D005907 ORTHO05D007033 1.0e-22 110.9 176 35.8
ClCG07G011130 Citrullus lanatus HOM05D005907 ORTHO05D007033 1.0e-22 110.9 164 37.2
Eucgr.E01152 Eucalyptus grandis HOM05D005907 ORTHO05D007033 2.3e-22 109.8 170 37.1
Nitab4.5_0006244g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 2.3e-22 109.8 153 43.1
THA.LOC104814387 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 2.3e-22 109.8 165 37.0
Thhalv10026210m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 3.0e-22 109.4 159 38.4
CsaV3_4G007120 Cucumis sativus L. HOM05D005907 ORTHO05D007033 6.7e-22 108.2 166 36.7
ECA233G3754 Erigeron canadensis HOM05D005907 ORTHO05D007033 6.7e-22 108.2 155 43.9
Sp7g17980 Schrenkiella parvula HOM05D005907 ORTHO05D007033 8.7e-22 107.8 154 38.3
Aa31LG6G1970 Aethionema arabicum HOM05D005907 ORTHO05D007033 1.9e-21 106.7 153 41.2
Gohir.A12G201000 Gossypium hirsutum HOM05D005907 ORTHO05D007033 1.9e-21 106.7 172 37.8
unitig_37.g12906 Utricularia gibba HOM05D005907 ORTHO05D007033 1.9e-21 106.7 150 42.7
ATR0568G210 Amborella trichopoda HOM05D005907 ORTHO05D007033 9.6e-21 104.4 148 38.5
Psat4g109120 Pisum sativum HOM05D005907 ORTHO05D007033 4.8e-20 102.1 128 41.4
VMungo0251G3198 Vigna mungo HOM05D005907 ORTHO05D007033 1.4e-19 100.5 172 37.8
Phvul.003G278300 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 1.8e-19 100.1 144 40.3
CDE01G0013 Ceratophyllum demersum HOM05D005907 ORTHO05D007033 6.9e-19 98.2 137 41.6
Sc07g0008040 Simmondsia chinensis HOM05D005907 ORTHO05D007033 7.6e-18 94.7 108 41.7
Cpa.g.c30909 Carica papaya HOM05D005907 ORTHO05D007033 2.2e-17 93.2 132 42.4
Haze_08422 Corylus avellana HOM05D005907 ORTHO05D007033 3.8e-17 92.4 76 57.9
EL10Ac5g12591 Beta vulgaris HOM05D005907 ORTHO05D007033 8.4e-17 91.3 173 33.5
Sed0021253 Sechium edule HOM05D005907 ORTHO05D007033 1.1e-16 90.9 118 39.8
Nitab4.5_0009213g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 5.5e-16 88.6 73 60.3
Zm00001eb251950 Zea mays HOM05D005907 ORTHO05D007033 3.0e-14 82.8 130 36.2
Os02g0703300 Oryza sativa ssp. japonica HOM05D005907 ORTHO05D007033 8.7e-14 81.3 121 35.5
arahy.Tifrunner.gnm1.ann1.93DHY7 Arachis hypogaea HOM05D005907 ORTHO05D007033 1.6e-12 77.0 82 51.2
Peaxi162Scf00550g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 9.0e-11 71.2 98 44.9
Nitab4.5_0000943g0070 Nicotiana tabacum HOM05D005907 ORTHO05D007033 2.0e-10 70.1 64 53.1
Aqoxy3G02055 Aquilegia oxysepala HOM05D002819 ORTHO05D003207 2.6e-10 69.7 140 31.4
SEGI_15207 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 3.4e-10 69.3 143 32.2
ClCG11G016110 Citrullus lanatus HOM05D005907 ORTHO05D007033 4.5e-10 68.9 64 50.0
Haze_08421 Corylus avellana HOM05D005907 ORTHO05D007033 1.7e-09 67.0 102 37.3
PGSC0003DMG400001952 Solanum tuberosum HOM05D005907 ORTHO05D007033 1.4e-08 63.9 59 49.2
Sc19g0000260 Simmondsia chinensis HOM05D002819 ORTHO05D003207 1.6e-07 60.5 147 31.3
DCAR_014571 Daucus carota HOM05D002819 ORTHO05D003207 2.7e-07 59.7 142 33.8
Nn1g02013 Nelumbo nucifera HOM05D002819 ORTHO05D003207 3.6e-07 59.3 145 30.3
SMO201G0204 Selaginella moellendorffii HOM05D002819 ORTHO05D003207 3.6e-07 59.3 166 30.1
CiPaw.05G236700 Carya illinoinensis HOM05D002819 ORTHO05D003207 1.4e-06 57.4 133 31.6
SEGI_02210 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 1.4e-06 57.4 145 25.5
ClCG11G016120 Citrullus lanatus HOM05D005907 ORTHO05D007033 2.3e-06 56.6 99 34.3
Aqoxy2G03476 Aquilegia oxysepala HOM05D005907 ORTHO05D007033 3.0e-06 56.2 103 35.9
Os05g0434600 Oryza sativa ssp. japonica HOM05D002819 ORTHO05D003207 3.0e-06 56.2 171 30.4
SalBow4G1237 Salvia bowleyana HOM05D002819 ORTHO05D003207 5.1e-06 55.5 147 29.9
THA.LOC104820872 Tarenaya hassleriana HOM05D002819 ORTHO05D003207 5.1e-06 55.5 156 29.5
Actinidia18697 Actinidia chinensis HOM05D002819 ORTHO05D003207 6.7e-06 55.1 166 30.1
Nitab4.5_0000021g0320 Nicotiana tabacum HOM05D002819 ORTHO05D003207 8.8e-06 54.7 169 29.6


User provided reference genes

Program Settings