Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold121G33048 Striga asiatica HOM05D005197 ORTHO05D006263 2.7e-130 468.8 254 100.0
MSTRG.13922 Avicennia marina HOM05D005197 ORTHO05D006263 3.8e-68 262.3 272 58.8
SalBow8G0134 Salvia bowleyana HOM05D005197 ORTHO05D006263 8.0e-66 254.6 267 56.9
Migut.E01390 Erythranthe guttata HOM05D005197 ORTHO05D006263 2.2e-63 246.5 271 58.7
Oeu057151.1 Olea europaea HOM05D005197 ORTHO05D006263 5.0e-52 208.8 277 50.9
SalBow8G0427 Salvia bowleyana HOM05D005197 ORTHO05D006263 1.5e-51 207.2 267 50.6
Sopen07g029250 Solanum pennellii HOM05D005197 ORTHO05D006263 2.4e-46 189.9 258 50.8
CAN.G22.3 Capsicum annuum HOM05D005197 ORTHO05D006263 1.2e-45 187.6 243 51.4
Peaxi162Scf00445g00001 Petunia axillaris HOM05D005197 ORTHO05D006263 5.0e-44 182.2 244 50.4
Nitab4.5_0004181g0010 Nicotiana tabacum HOM05D005197 ORTHO05D006263 6.2e-42 175.3 286 44.8
PGSC0003DMG400041236 Solanum tuberosum HOM05D005197 ORTHO05D006263 1.3e-39 167.5 242 47.1
Nitab4.5_0000183g0040 Nicotiana tabacum HOM05D005197 ORTHO05D006263 1.1e-38 164.5 288 43.1
RcHm_v2.0_Chr7g0214771 Rosa chinensis HOM05D005197 ORTHO05D006263 2.4e-38 163.3 280 42.1
Cc00_g01150 Coffea canephora HOM05D005197 ORTHO05D006263 4.1e-38 162.5 288 39.9
VMungo1215G2329 Vigna mungo HOM05D005197 ORTHO05D006263 5.4e-38 162.2 253 43.9
Phvul.002G124900 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 3.5e-37 159.5 248 44.4
Cfa012647 Carpinus fangiana HOM05D005197 ORTHO05D006263 2.3e-36 156.8 298 42.6
Atru.chr6.2120 Acer truncatum HOM05D005197 ORTHO05D006263 3.9e-36 156.0 271 42.4
Haze_08011 Corylus avellana HOM05D005197 ORTHO05D006263 6.6e-36 155.2 298 42.3
ClCG07G011270 Citrullus lanatus HOM05D005197 ORTHO05D006263 8.6e-36 154.8 275 41.1
PGR042G3936 Punica granatum HOM05D005197 ORTHO05D006263 7.3e-35 151.8 305 39.3
QL12p002187 Quercus lobata HOM05D005197 ORTHO05D006263 7.3e-35 151.8 253 46.6
CsaV3_4G006970 Cucumis sativus L. HOM05D005197 ORTHO05D006263 9.5e-35 151.4 283 39.9
FAN04G2949 Fragaria x ananassa HOM05D005197 ORTHO05D006263 2.1e-34 150.2 276 42.4
MELO3C016247.2 Cucumis melo HOM05D005197 ORTHO05D006263 2.8e-34 149.8 283 39.2
TAR629G2553 Trochodendron aralioides HOM05D005197 ORTHO05D006263 6.2e-34 148.7 273 42.1
FAN13G2818 Fragaria x ananassa HOM05D005197 ORTHO05D006263 2.3e-33 146.7 279 40.1
TWI32G0688 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 3.1e-33 146.4 308 37.7
Rhsim05G0122600 Rhododendron simsii HOM05D005197 ORTHO05D006263 4.0e-33 146.0 277 41.5
TWI60G1368 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 4.0e-33 146.0 314 37.6
vmacro19764 Vaccinium macrocarpon HOM05D005197 ORTHO05D006263 5.2e-33 145.6 282 42.2
FAN08G2611 Fragaria x ananassa HOM05D005197 ORTHO05D006263 6.8e-33 145.2 278 43.2
DCAR_030955 Daucus carota HOM05D005197 ORTHO05D006263 2.6e-32 143.3 262 43.1
Manes.17G005300 Manihot esculenta HOM05D005197 ORTHO05D006263 3.4e-32 142.9 273 42.9
CiPaw.10G109500 Carya illinoinensis HOM05D005197 ORTHO05D006263 4.4e-32 142.5 313 41.9
Ah.12g056120 Amaranthus hybridus HOM05D005197 ORTHO05D006263 5.8e-32 142.1 271 41.0
Lsat_1_v5_gn_6_15401 Lactuca sativa HOM05D005197 ORTHO05D006263 7.6e-32 141.7 279 44.8
Actinidia25714 Actinidia chinensis HOM05D005197 ORTHO05D006263 4.9e-31 139.0 286 43.0
CANSAT01G1003 Cannabis sativa HOM05D005197 ORTHO05D006263 1.9e-30 137.1 279 40.9
unitig_748.g8157 Utricularia gibba HOM05D000246 ORTHO05D007958 1.9e-30 137.1 235 46.4
Thecc.03G323400 Theobroma cacao HOM05D005197 ORTHO05D006263 2.4e-30 136.7 254 42.1
Eucgr.E01174 Eucalyptus grandis HOM05D005197 ORTHO05D006263 5.4e-30 135.6 272 39.3
Medtr5g026390 Medicago truncatula HOM05D005197 ORTHO05D006263 1.6e-29 134.0 291 36.1
Psat2g143520 Pisum sativum HOM05D005197 ORTHO05D006263 2.1e-29 133.7 282 39.0
FvH4_5g24380 Fragaria vesca HOM05D005197 ORTHO05D006263 3.5e-29 132.9 271 38.7
Cpa.g.sc305.1 Carica papaya HOM05D005197 ORTHO05D006263 4.6e-29 132.5 295 40.3
MD16G1288300 Malus domestica HOM05D005197 ORTHO05D006263 7.8e-29 131.7 283 38.5
Lj2g0023539 Lotus japonicus HOM05D005197 ORTHO05D006263 1.3e-28 131.0 267 40.1
FAN18G1897 Fragaria x ananassa HOM05D005197 ORTHO05D006263 8.6e-28 128.3 269 38.3
ECA232G2780 Erigeron canadensis HOM05D005197 ORTHO05D006263 1.5e-27 127.5 265 38.5
TPR.G17269 Trifolium pratense HOM05D005197 ORTHO05D006263 1.9e-27 127.1 278 38.5
Prupe.5G017000 Prunus persica HOM05D005197 ORTHO05D006263 4.3e-27 125.9 293 37.9
Duzib084G1118 Durio zibethinus HOM05D005197 ORTHO05D006263 5.6e-27 125.6 253 39.9
Nn1g09229 Nelumbo nucifera HOM05D005197 ORTHO05D006263 7.3e-27 125.2 275 39.3
Nn3g19195 Nelumbo nucifera HOM05D005197 ORTHO05D006263 9.6e-27 124.8 261 39.1
arahy.Tifrunner.gnm1.ann1.11I9TD Arachis hypogaea HOM05D005197 ORTHO05D006263 1.2e-26 124.4 294 40.5
arahy.Tifrunner.gnm1.ann1.CK7EWS Arachis hypogaea HOM05D005197 ORTHO05D006263 1.2e-26 124.4 294 40.5
Lalb_Chr16g0380581 Lupinus albus HOM05D005197 ORTHO05D006263 1.2e-26 124.4 263 36.5
Sed0006364 Sechium edule HOM05D005197 ORTHO05D006263 1.6e-26 124.0 322 36.3
Ciclev10002053m.g Citrus clementina HOM05D005197 ORTHO05D006263 3.6e-26 122.9 294 39.8
Potri.001G128600 Populus trichocarpa HOM05D005197 ORTHO05D006263 3.6e-26 122.9 322 38.2
Sc22g0002200 Simmondsia chinensis HOM05D005197 ORTHO05D006263 3.6e-26 122.9 255 42.7
ECA233G2979 Erigeron canadensis HOM05D005197 ORTHO05D006263 8.1e-26 121.7 287 39.7
Lj8A379T44 Lonicera japonica HOM05D005197 ORTHO05D006263 6.9e-25 118.6 274 40.9
Glyma.01G150900 Glycine max HOM05D005197 ORTHO05D006263 2.2e-23 113.6 267 41.2
ATR0369G001 Amborella trichopoda HOM05D005197 ORTHO05D006263 1.1e-22 111.3 288 36.8
EL10Ac5g11882 Beta vulgaris HOM05D005197 ORTHO05D006263 3.2e-22 109.8 266 35.7
PSO782G4627 Papaver somniferum HOM05D005197 ORTHO05D006263 6.0e-21 105.5 280 35.4
Ca_25075_v3 Cicer arietinum L. HOM05D005197 ORTHO05D006263 3.0e-20 103.2 321 29.9
A09p34750 Brassica napus HOM05D000153 ORTHO05D002648 3.9e-20 102.8 270 38.5
SalBow2G3639 Salvia bowleyana HOM05D002402 ORTHO05D002633 2.5e-19 100.1 105 55.2
COL.COLO4_16714 Corchorus olitorius HOM05D005197 ORTHO05D006263 7.3e-19 98.6 250 34.8
AL1G49590 Arabidopsis lyrata HOM05D005197 ORTHO05D006263 9.6e-19 98.2 295 33.2
CARHR030980 Cardamine hirsuta HOM05D005197 ORTHO05D006263 1.6e-18 97.4 306 32.7
Carub.0001s2988 Capsella rubella HOM05D005197 ORTHO05D006263 2.1e-18 97.1 309 31.7
BraA09t39008Z Brassica rapa HOM05D000153 ORTHO05D002648 4.8e-18 95.9 247 38.1
Sabra01G0098900 Salix brachista HOM05D005197 ORTHO05D006263 8.1e-18 95.1 323 31.0
AT1G31460 Arabidopsis thaliana HOM05D005197 ORTHO05D006263 2.4e-17 93.6 299 33.8
BcaB07g32805 Brassica carinata HOM05D005197 ORTHO05D006263 2.4e-17 93.6 271 35.4
TAR636G3359 Trochodendron aralioides HOM05D005197 ORTHO05D006263 9.0e-17 91.7 104 50.0
SalBow2G1093 Salvia bowleyana HOM05D005197 ORTHO05D006263 1.5e-16 90.9 100 52.0
Solyc07g055880.1 Solanum lycopersicum HOM05D005197 ORTHO05D006263 2.0e-16 90.5 65 73.8
SalBow7G0563 Salvia bowleyana HOM05D005197 ORTHO05D006263 4.5e-16 89.4 100 51.0
Glyma.09G216000 Glycine max HOM05D005197 ORTHO05D006263 5.8e-16 89.0 94 52.1
Sp1g27260 Schrenkiella parvula HOM05D005197 ORTHO05D006263 5.8e-16 89.0 304 31.2
HanXRQChr17g0539691 Helianthus annuus HOM05D005197 ORTHO05D006263 7.6e-16 88.6 369 30.9
BcaC05g27174 Brassica carinata HOM05D005197 ORTHO05D006263 9.9e-16 88.2 294 33.3
BolC5t31804H Brassica oleracea HOM05D000153 ORTHO05D002648 9.9e-16 88.2 294 33.3
SalBow6G3245 Salvia bowleyana HOM05D005197 ORTHO05D006263 9.9e-16 88.2 90 60.0
C05p30720 Brassica napus HOM05D000153 ORTHO05D002648 1.1e-14 84.7 283 33.2
SalBow6G4547 Salvia bowleyana HOM05D005197 ORTHO05D006263 1.1e-14 84.7 84 56.0
SGA_v2.0_scaffold241G44185 Striga asiatica HOM05D005197 ORTHO05D006263 1.1e-14 84.7 120 51.7
AUR62027297 Chenopodium quinoa HOM05D005197 ORTHO05D006263 1.4e-14 84.3 232 35.3
AUR62022385 Chenopodium quinoa HOM05D005197 ORTHO05D006263 2.4e-14 83.6 218 35.8
CDE11G1044 Ceratophyllum demersum HOM05D005197 ORTHO05D006263 4.2e-14 82.8 262 33.2
MBI04_g30782_MAGBIO Magnolia biondii HOM05D005197 ORTHO05D006263 4.2e-14 82.8 71 62.0
Aa31LG2G14490 Aethionema arabicum HOM05D005197 ORTHO05D006263 5.4e-14 82.4 308 32.8
Actinidia25715 Actinidia chinensis HOM05D005197 ORTHO05D006263 2.7e-13 80.1 68 58.8
Aqoxy3G01755 Aquilegia oxysepala HOM05D005197 ORTHO05D006263 2.7e-13 80.1 259 34.7
Glyma.09G215900 Glycine max HOM05D005197 ORTHO05D006263 2.7e-13 80.1 244 34.8
Nn3g19194 Nelumbo nucifera HOM05D005197 ORTHO05D006263 2.7e-13 80.1 98 45.9
Glyma.01G151000 Glycine max HOM05D005197 ORTHO05D006263 6.0e-13 79.0 98 46.9
SEGI_24603 Sequoiadendron giganteum HOM05D005197 ORTHO05D006263 1.0e-12 78.2 282 31.6
THA.LOC104814380 Tarenaya hassleriana HOM05D005197 ORTHO05D006263 2.3e-12 77.0 326 28.8
PSO063G5355 Papaver somniferum HOM05D005197 ORTHO05D006263 3.0e-12 76.6 264 31.4
Lalb_Chr05g0215321 Lupinus albus HOM05D005197 ORTHO05D006263 3.9e-12 76.3 86 47.7
Thhalv10008233m.g Eutrema salsugineum HOM05D005197 ORTHO05D006263 6.7e-12 75.5 313 30.7
TPR.G17242 Trifolium pratense HOM05D005197 ORTHO05D006263 8.7e-12 75.1 93 45.2
HPP92_022730 Vanilla planifolia HOM05D005197 ORTHO05D006263 1.5e-11 74.3 252 26.2
TPR.G36193 Trifolium pratense HOM05D005197 ORTHO05D006263 1.9e-11 73.9 93 46.2
Psat2g143800 Pisum sativum HOM05D005197 ORTHO05D006263 2.5e-11 73.6 95 46.3
CARHR023710 Cardamine hirsuta HOM05D005197 ORTHO05D006263 4.3e-11 72.8 59 67.8
QL12p002196 Quercus lobata HOM05D005197 ORTHO05D006263 7.4e-11 72.0 100 43.0
TPR.G902 Trifolium pratense HOM05D005197 ORTHO05D006263 1.3e-10 71.2 81 48.1
CiPaw.11G075300 Carya illinoinensis HOM05D005197 ORTHO05D006263 1.6e-10 70.9 99 45.5
SGA_v2.0_scaffold447G51756 Striga asiatica HOM05D005197 ORTHO05D006263 1.6e-10 70.9 181 34.3
Phvul.002G124800 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 2.8e-10 70.1 92 46.7
TPR.G23178 Trifolium pratense HOM05D005197 ORTHO05D006263 3.6e-10 69.7 187 33.7
Thhalv10009724m.g Eutrema salsugineum HOM05D005197 ORTHO05D006263 6.2e-10 68.9 74 59.5
Cfa012646 Carpinus fangiana HOM05D005197 ORTHO05D006263 8.1e-10 68.6 93 46.2
Haze_08012 Corylus avellana HOM05D005197 ORTHO05D006263 8.1e-10 68.6 97 45.4
Dinv09432 Davidia involucrata HOM05D005197 ORTHO05D002665 8.1e-10 68.6 134 41.8
Aa31LG9G15880 Aethionema arabicum HOM05D005197 ORTHO05D006263 1.8e-09 67.4 251 32.7
Haze_08014 Corylus avellana HOM05D005197 ORTHO05D006263 1.8e-09 67.4 97 44.3
Hma1.2p1_0317F.1_g123280 Hydrangea macrophylla HOM05D005197 ORTHO05D006263 2.4e-09 67.0 49 63.3
VMungo1215G1205 Vigna mungo HOM05D005197 ORTHO05D006263 2.4e-09 67.0 93 39.8
Zm00001eb227690 Zea mays HOM05D005197 ORTHO05D006263 2.4e-09 67.0 287 32.1
Medtr5g026380 Medicago truncatula HOM05D005197 ORTHO05D006263 3.1e-09 66.6 94 44.7
C05p22480 Brassica napus HOM05D005197 ORTHO05D006263 4.0e-09 66.2 61 60.7
Lj2g0019897 Lotus japonicus HOM05D005197 ORTHO05D006263 4.0e-09 66.2 83 50.6
A09p41500 Brassica napus HOM05D005197 ORTHO05D006263 1.2e-08 64.7 59 61.0
BraA09t39642Z Brassica rapa HOM05D005197 ORTHO05D006263 1.2e-08 64.7 59 61.0
BcaC05g26236 Brassica carinata HOM05D005197 ORTHO05D006263 1.5e-08 64.3 59 61.0
BolC5t30946H Brassica oleracea HOM05D005197 ORTHO05D006263 1.5e-08 64.3 59 61.0
Carub.0001s2285 Capsella rubella HOM05D005197 ORTHO05D006263 1.5e-08 64.3 70 58.6
SalBow5G1394 Salvia bowleyana HOM05D005197 ORTHO05D006263 1.5e-08 64.3 114 39.5
BcaB07g32316 Brassica carinata HOM05D005197 ORTHO05D006263 3.4e-08 63.2 94 46.8
AL1G37050 Arabidopsis lyrata HOM05D005197 ORTHO05D006263 1.7e-07 60.8 55 61.8
Carub.0001s2286 Capsella rubella HOM05D005197 ORTHO05D006263 2.2e-07 60.5 90 46.7
AT1G23270 Arabidopsis thaliana HOM05D005197 ORTHO05D006263 3.8e-07 59.7 86 50.0
AL1G31860 Arabidopsis lyrata HOM05D005197 ORTHO05D006263 4.9e-07 59.3 59 59.3
Eucgr.E01175 Eucalyptus grandis HOM05D012124 ORTHO05D006263 1.4e-06 57.8 77 45.5
VMungo0464G0602 Vigna mungo HOM05D005197 ORTHO05D006263 1.4e-06 57.8 173 29.5
arahy.Tifrunner.gnm1.ann1.G7W534 Arachis hypogaea HOM05D005197 ORTHO05D006263 4.2e-06 56.2 87 41.4
arahy.Tifrunner.gnm1.ann1.JB60CZ Arachis hypogaea HOM05D005197 ORTHO05D006263 4.2e-06 56.2 87 41.4


User provided reference genes

Program Settings