Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1984.5 985 100.0
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1360.5 990 71.3
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1291.9 978 67.6
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1287.3 994 66.5
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1283.9 1036 65.9
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1223.4 1005 63.3
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1219.5 1005 63.2
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1217.2 1027 63.3
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1195.3 996 62.9
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1192.9 1007 63.6
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1177.9 987 62.0
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1176.0 987 62.1
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1168.3 1003 61.5
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1164.8 999 61.5
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1162.9 1004 61.0
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1161.7 1007 61.8
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1158.3 999 60.8
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1155.2 991 61.6
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1149.0 1043 59.5
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1144.0 1010 61.1
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1132.9 993 60.7
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1132.5 997 61.6
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1132.5 991 60.8
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1129.8 1000 61.1
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1129.0 1000 61.2
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1127.5 987 61.0
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1127.1 988 61.6
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1125.5 1003 59.2
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1125.5 1010 59.6
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1121.7 979 59.6
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1119.0 997 60.5
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1118.6 993 60.3
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1117.1 967 59.6
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1117.1 1013 58.5
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1117.1 1021 60.0
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1115.9 987 60.0
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1113.6 992 59.5
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1112.4 1001 60.3
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1111.3 981 59.5
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1110.5 996 60.2
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1109.4 992 58.8
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1107.0 1041 59.2
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1104.0 999 58.5
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1102.4 1009 58.9
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1101.7 986 60.0
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1100.1 1000 59.1
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1097.8 980 59.4
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1097.8 992 58.9
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1094.3 993 60.5
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1093.6 998 59.0
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1091.3 1030 57.9
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1091.3 1020 57.7
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1087.8 989 58.7
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1086.2 986 58.7
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1085.5 999 58.6
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1085.1 998 59.7
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1082.4 965 59.2
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1080.5 1005 58.5
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 0.0e+00 1079.7 1064 56.8
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 6.7e-312 1074.3 995 58.9
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 6.7e-312 1073.5 1081 54.4
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 2.0e-311 1072.4 997 58.0
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 3.4e-311 1071.6 1056 55.3
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 3.4e-311 1071.6 922 61.5
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 6.1e-311 1070.8 1058 55.3
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 1.8e-310 1069.3 999 57.9
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.1e-309 1066.6 1058 55.0
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 1.3e-308 1063.1 1073 55.3
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 1.3e-308 1063.1 985 57.5
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 3.7e-308 1061.6 987 57.4
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 3.7e-308 1061.6 1008 56.3
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 4.0e-307 1058.1 1003 56.9
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 6.9e-307 1057.4 992 57.9
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 9.0e-307 1057.0 996 57.7
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 3.4e-306 1055.0 995 56.7
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 4.5e-306 1054.7 993 57.4
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 7.6e-306 1053.9 996 57.5
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.7e-305 1052.7 1010 57.3
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 2.9e-305 1052.0 988 57.6
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 1.4e-304 1049.7 984 57.6
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 2.4e-304 1048.9 1114 51.9
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 7.1e-304 1047.3 995 56.5
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 7.1e-304 1047.3 996 57.1
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 9.3e-304 1047.0 988 57.9
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 3.5e-303 1045.0 984 57.4
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 3.5e-303 1045.0 984 57.4
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 5.1e-302 1041.2 1021 55.3
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 2.8e-300 1035.4 988 56.8
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 8.2e-300 1033.9 923 60.6
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 1.4e-299 1033.1 1003 55.6
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 2.4e-299 1032.3 991 56.7
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 2.4e-299 1032.3 991 56.7
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 1.5e-298 1029.6 974 55.6
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 7.4e-293 1010.7 1001 55.2
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 1.6e-292 1009.6 992 54.6
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 2.6e-290 1002.3 1112 51.5
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 1.3e-289 1000.0 975 55.9
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 1.7e-289 999.6 974 56.0
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 5.0e-289 998.0 1009 55.2
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 2.5e-288 995.7 877 60.1
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.2e-287 993.4 1005 54.6
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.6e-287 993.0 1004 54.4
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 8.8e-286 987.3 993 55.2
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 3.1e-283 978.8 997 54.0
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 5.3e-283 978.0 873 59.5
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 5.9e-282 974.5 1015 53.0
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 1.0e-281 973.8 822 62.3
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 7.2e-280 967.6 981 55.0
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 8.8e-278 960.7 996 54.4
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 5.7e-277 958.0 1236 46.8
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.1e-275 953.7 1112 49.4
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 2.6e-274 949.1 861 59.0
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 5.7e-253 878.2 968 51.7
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 2.0e-245 853.2 847 55.3
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 3.9e-241 839.0 1051 46.5
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 4.7e-239 832.0 898 51.2
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 4.1e-235 818.9 946 47.5
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 9.2e-235 817.8 799 55.4
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.0e-230 802.4 741 59.5
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.3e-228 797.3 738 58.4
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 3.5e-226 789.3 1121 41.3
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 5.6e-200 702.2 458 77.9
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 4.3e-192 676.0 669 54.9
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 7.1e-187 658.7 644 55.7
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 7.9e-186 655.2 692 54.5
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 2.7e-178 630.2 814 47.4
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.5e-157 561.2 446 66.4
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 2.7e-154 550.4 406 69.2
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.7e-154 550.4 396 70.5
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 7.0e-134 482.6 501 54.9
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.2e-130 471.9 317 73.5
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 3.6e-130 470.3 608 46.9
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.0e-125 454.5 739 41.0
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 4.3e-123 446.8 322 68.9
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 7.8e-117 426.0 334 65.6
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.7e-116 424.9 331 64.0
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.0e-112 411.4 589 44.3
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 7.6e-104 382.9 465 48.4
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 4.6e-101 373.6 326 56.7
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 9.3e-86 322.8 250 65.2
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 1.5e-51 209.1 187 59.4
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.3e-49 200.7 139 67.6
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 7.4e-43 180.3 158 59.5
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.4e-41 176.0 210 46.7
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 1.3e-39 169.5 130 64.6
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 6.3e-34 150.6 120 65.0
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.1e-33 149.8 278 39.2
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 8.0e-29 133.7 76 81.6
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 3.4e-27 128.3 112 59.8
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.1e-25 123.2 131 50.4
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.9e-22 112.5 86 60.5
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 1.4e-17 96.3 66 69.7
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 9.2e-17 93.6 160 36.9
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 2.5e-14 85.5 53 71.7
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 5.6e-14 84.3 82 54.9
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 2.8e-13 82.0 46 80.4
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 8.0e-13 80.5 57 63.2
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 8.9e-12 77.0 50 72.0
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 2.6e-11 75.5 134 32.8
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 2.2e-10 72.4 68 54.4
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.4e-09 69.7 62 56.5
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.0e-07 63.5 52 61.5
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 3.9e-07 61.6 144 31.9
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 8.6e-07 60.5 53 52.8
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 8.6e-07 60.5 53 52.8
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 4.3e-06 58.2 33 66.7


User provided reference genes

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