Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 3.2e-160 568.5 329 100.0
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 4.8e-71 272.3 311 54.0
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 3.7e-55 219.5 315 47.3
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 2.2e-47 193.7 304 42.8
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 2.9e-36 156.8 311 37.9
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 2.1e-34 150.6 311 37.0
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 3.4e-32 143.3 310 36.1
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 7.5e-32 142.1 331 35.6
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 1.3e-31 141.4 309 35.6
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 2.2e-31 140.6 310 36.5
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 1.1e-30 138.3 309 36.6
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 7.0e-30 135.6 311 35.4
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 7.0e-30 135.6 339 34.5
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 1.6e-29 134.4 261 39.5
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 5.9e-29 132.5 316 36.1
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 1.0e-28 131.7 312 32.7
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 1.0e-28 131.7 305 36.1
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 1.3e-28 131.3 324 35.5
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 1.7e-28 131.0 311 32.8
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 6.6e-28 129.0 314 34.7
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 6.6e-28 129.0 332 33.7
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 1.5e-27 127.9 327 35.8
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 1.9e-27 127.5 308 33.4
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 2.5e-27 127.1 308 32.5
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 4.3e-27 126.3 309 35.3
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 4.3e-27 126.3 313 33.5
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 5.6e-27 125.9 311 32.8
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 2.1e-26 124.0 350 32.0
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 2.8e-26 123.6 318 33.6
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 3.6e-26 123.2 314 31.8
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 6.1e-26 122.5 362 31.5
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 6.1e-26 122.5 308 32.5
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 8.0e-26 122.1 264 35.6
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 2.3e-25 120.6 315 30.8
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 4.0e-25 119.8 312 33.7
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 1.2e-24 118.2 316 33.2
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 2.0e-24 117.5 318 30.8
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 4.4e-24 116.3 319 34.8
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 9.8e-24 115.2 331 33.8
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 1.3e-23 114.8 305 32.5
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 1.7e-23 114.4 261 34.9
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 2.9e-23 113.6 313 33.2
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 2.9e-23 113.6 308 29.9
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 2.9e-23 113.6 151 45.7
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 3.7e-23 113.2 263 35.0
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 6.4e-23 112.5 311 33.8
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 8.3e-23 112.1 316 31.6
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 1.4e-22 111.3 267 34.5
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 1.4e-22 111.3 318 30.5
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 1.9e-22 110.9 307 33.9
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 1.9e-22 110.9 316 31.3
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 2.4e-22 110.5 304 31.9
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 4.1e-22 109.8 313 33.5
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 7.0e-22 109.0 320 33.4
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 9.2e-22 108.6 316 31.0
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 1.6e-21 107.8 296 33.8
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 7.8e-21 105.5 245 33.5
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 1.3e-20 104.8 288 33.0
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 3.9e-20 103.2 314 29.0
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 5.0e-20 102.8 266 32.7
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 5.0e-20 102.8 142 45.1
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 6.6e-20 102.4 326 30.4
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 8.6e-20 102.1 324 29.6
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 8.6e-20 102.1 261 31.4
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 1.1e-19 101.7 319 30.7
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 2.5e-19 100.5 316 29.7
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 7.3e-19 99.0 308 30.2
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 2.1e-18 97.4 320 30.6
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 2.1e-18 97.4 215 35.3
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 2.8e-18 97.1 341 28.7
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 8.0e-18 95.5 326 29.4
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 1.1e-17 95.1 311 29.6
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 1.8e-17 94.4 287 31.4
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 2.3e-17 94.0 301 30.2
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 2.3e-17 94.0 269 31.2
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 3.1e-17 93.6 311 29.3
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 3.1e-17 93.6 311 29.3
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 4.0e-17 93.2 311 29.3
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 5.2e-17 92.8 304 29.9
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 6.8e-17 92.4 215 35.8
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 1.2e-16 91.7 317 29.3
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 2.0e-16 90.9 131 42.7
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 2.6e-16 90.5 288 29.9
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 1.3e-15 88.2 251 29.1
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 2.4e-14 84.0 318 28.0
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 4.1e-14 83.2 333 27.6
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 7.0e-14 82.4 284 28.9
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 1.6e-13 81.3 332 27.7
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 2.1e-13 80.9 212 34.0
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 2.7e-13 80.5 109 40.4
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 4.6e-13 79.7 335 27.2
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 6.0e-13 79.3 103 40.8
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 2.3e-12 77.4 196 31.6
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 2.3e-12 77.4 142 37.3
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 1.9e-11 74.3 142 36.6
vmacro02927 Vaccinium macrocarpon HOM05D007204 ORTHO05D008593 5.6e-11 72.8 84 53.6
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 1.6e-10 71.2 143 33.6
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 2.8e-10 70.5 141 36.9
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 1.5e-08 64.7 257 26.8
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 1.5e-08 64.7 142 35.2
Ca_05090_v3 Cicer arietinum L. HOM05D007204 ORTHO05D008593 1.3e-07 61.6 87 43.7
Ca_14995_v3 Cicer arietinum L. HOM05D007204 ORTHO05D008593 1.3e-07 61.6 87 43.7
TPR.G444 Trifolium pratense HOM05D007204 ORTHO05D008593 7.1e-06 55.8 47 59.6


User provided reference genes

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