Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 7.6e-211 736.9 363 100.0
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 1.4e-167 593.2 340 85.0
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.4e-143 513.5 372 69.6
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 9.5e-137 490.7 333 73.6
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 4.0e-135 485.3 333 72.7
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 3.4e-126 455.7 369 63.4
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 4.9e-125 451.8 369 63.1
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 1.9e-124 449.9 333 68.5
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 9.2e-124 447.6 362 61.9
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.2e-123 447.2 333 67.9
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 5.6e-121 438.3 373 58.7
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 2.3e-119 433.0 323 64.7
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 1.5e-118 430.3 331 64.7
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 3.4e-118 429.1 343 65.6
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 8.3e-117 424.5 344 61.0
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 1.9e-116 423.3 355 61.7
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.9e-116 423.3 340 61.2
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 3.2e-116 422.5 340 61.2
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.2e-116 422.5 340 61.2
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 3.2e-116 422.5 364 58.5
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.6e-115 420.2 339 61.4
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 2.7e-115 419.5 364 58.5
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 2.7e-115 419.5 355 59.7
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 4.6e-115 418.7 364 58.2
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 7.8e-115 417.9 357 59.1
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 7.8e-115 417.9 364 58.2
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 1.0e-114 417.5 318 64.8
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 1.7e-114 416.8 331 63.4
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 5.1e-114 415.2 331 61.9
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 2.5e-113 412.9 368 57.3
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 7.3e-113 411.4 335 60.0
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 7.3e-113 411.4 342 60.2
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.6e-112 410.2 318 64.2
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 2.8e-112 409.5 339 60.2
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 2.8e-112 409.5 374 56.7
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 2.8e-112 409.5 339 60.8
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 3.6e-112 409.1 364 58.0
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 6.2e-112 408.3 358 58.9
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 8.1e-112 407.9 332 62.3
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.4e-111 407.1 375 55.5
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.8e-111 406.8 395 53.7
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 3.1e-111 406.0 377 55.2
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 4.0e-111 405.6 321 62.3
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 4.0e-111 405.6 331 61.3
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 1.2e-110 404.1 359 57.9
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 2.6e-110 402.9 333 61.0
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 9.9e-110 401.0 375 55.7
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.7e-109 400.2 385 55.6
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 4.9e-109 398.7 337 59.6
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 4.9e-109 398.7 376 55.1
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 1.4e-108 397.1 316 61.7
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 3.2e-108 396.0 338 59.2
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 5.4e-108 395.2 392 53.8
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 5.4e-108 395.2 366 56.8
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 9.2e-108 394.4 337 59.1
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 9.2e-108 394.4 268 70.1
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 2.1e-107 393.3 319 62.1
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 3.5e-107 392.5 372 55.6
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 3.0e-106 389.4 339 58.1
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 1.5e-105 387.1 360 56.1
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 4.3e-105 385.6 355 56.6
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 5.6e-105 385.2 313 60.7
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 1.6e-104 383.6 313 60.4
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 4.7e-104 382.1 329 59.6
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 8.1e-104 381.3 369 53.1
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 1.1e-103 380.9 316 60.4
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 4.0e-103 379.0 336 58.9
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 5.2e-103 378.6 293 62.8
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 9.0e-103 377.9 340 55.3
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 9.0e-103 377.9 293 62.8
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 1.5e-102 377.1 313 59.7
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 2.0e-102 376.7 334 56.3
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 2.6e-102 376.3 338 57.1
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 3.4e-102 375.9 316 59.8
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 5.8e-102 375.2 316 60.1
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 5.8e-102 375.2 321 57.6
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 7.6e-102 374.8 313 59.1
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 1.7e-101 373.6 347 55.6
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 2.9e-101 372.9 372 52.7
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 3.8e-101 372.5 325 57.8
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 4.9e-101 372.1 321 55.8
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 3.2e-100 369.4 317 58.7
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 5.4e-100 368.6 326 58.0
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 5.4e-100 368.6 326 54.9
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 9.3e-100 367.9 373 52.0
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 2.1e-99 366.7 317 58.4
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 4.6e-99 365.5 343 55.7
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 6.0e-99 365.2 346 53.5
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 1.3e-98 364.0 334 55.1
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.7e-98 363.6 339 55.8
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 1.7e-98 363.6 362 53.0
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 3.0e-98 362.8 320 57.8
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 6.6e-98 361.7 322 55.6
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 6.6e-98 361.7 345 53.0
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 8.7e-98 361.3 275 63.6
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.1e-97 360.9 275 63.6
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 2.5e-97 359.8 336 57.1
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 1.3e-96 357.5 322 57.5
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 2.8e-96 356.3 280 63.2
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 1.8e-95 353.6 316 56.3
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 2.4e-95 353.2 318 56.9
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 1.5e-94 350.5 317 56.8
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 7.6e-94 348.2 333 52.6
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 2.2e-93 346.7 273 63.4
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 4.9e-93 345.5 320 54.4
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 2.5e-89 333.2 279 60.2
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 7.4e-89 331.6 316 52.8
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 2.8e-88 329.7 277 58.1
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 3.1e-87 326.2 320 54.1
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 2.0e-86 323.6 329 53.8
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 1.1e-84 317.8 312 54.8
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 4.6e-83 312.4 280 58.2
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 3.0e-82 309.7 289 57.4
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 8.2e-80 301.6 288 54.5
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 2.7e-67 260.0 266 48.5
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 3.9e-66 256.1 281 48.8
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.3e-64 251.1 304 42.4
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 2.8e-64 250.0 289 45.3
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 2.5e-60 236.9 286 43.4
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 5.5e-60 235.7 294 42.5
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 8.8e-58 228.4 190 60.5
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 1.8e-55 220.7 195 54.4
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 5.3e-55 219.2 269 44.2
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 3.5e-46 189.9 174 58.0
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 4.5e-46 189.5 163 56.4
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.8e-32 143.7 179 51.4
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 5.4e-31 139.4 129 56.6
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 2.3e-29 134.0 129 54.3
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 2.1e-27 127.5 88 67.0
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 4.9e-24 116.3 104 59.6
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 4.7e-19 99.8 120 50.8
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 4.7e-19 99.8 120 50.8
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 5.2e-18 96.3 63 76.2
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 8.9e-18 95.5 85 56.5
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 1.7e-13 81.3 81 50.6
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.7e-13 81.3 71 57.7
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 3.3e-12 77.0 97 42.3
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 4.1e-07 60.1 47 59.6
AUR62004081 Chenopodium quinoa HOM05D004293 ORTHO05D005044 4.6e-06 56.6 146 28.8
TAR374G1348 Trochodendron aralioides HOM05D000559 ORTHO05D000596 4.6e-06 56.6 82 35.4
AagrBONN_evm.TU.Sc2ySwM_344.936 Anthoceros agrestis HOM05D006163 ORTHO05D007625 6.0e-06 56.2 152 29.6


User provided reference genes

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