Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 5.1e-119 431.4 273 100.0
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 4.0e-79 298.9 269 61.3
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 6.3e-77 291.6 275 58.5
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 5.9e-75 285.0 244 68.9
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 1.7e-74 283.5 264 59.5
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 6.6e-74 281.6 246 61.0
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 4.3e-73 278.9 270 57.8
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 5.6e-73 278.5 246 60.6
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 7.3e-73 278.1 266 56.0
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 9.5e-73 277.7 256 60.5
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 9.5e-73 277.7 241 66.0
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 1.2e-72 277.3 243 60.9
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.6e-72 276.9 278 57.2
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 2.1e-72 276.6 278 57.2
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 3.6e-72 275.8 246 60.6
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 1.4e-71 273.9 254 59.4
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 1.8e-71 273.5 242 65.3
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 3.1e-71 272.7 249 63.5
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 3.1e-71 272.7 244 68.4
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 3.1e-71 272.7 259 57.5
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 4.0e-71 272.3 267 56.2
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 2.6e-70 269.6 241 66.4
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 3.4e-70 269.2 243 60.9
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 3.4e-70 269.2 244 61.1
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 4.4e-70 268.9 249 58.6
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 4.4e-70 268.9 264 58.0
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 5.8e-70 268.5 267 55.1
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 7.5e-70 268.1 270 53.0
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 7.5e-70 268.1 254 56.7
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 7.5e-70 268.1 241 58.5
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.3e-69 267.3 252 58.3
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 1.3e-69 267.3 244 76.6
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 1.3e-69 267.3 249 57.8
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 1.7e-69 266.9 270 53.0
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 1.7e-69 266.9 270 53.0
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 1.7e-69 266.9 236 59.3
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 1.7e-69 266.9 249 65.1
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 2.2e-69 266.5 266 53.8
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 2.9e-69 266.2 272 52.9
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 2.9e-69 266.2 272 52.9
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 4.9e-69 265.4 241 56.0
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 4.9e-69 265.4 269 60.6
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 6.4e-69 265.0 270 55.9
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 1.1e-68 264.2 244 58.2
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.4e-68 263.8 244 57.8
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.9e-68 263.5 244 59.4
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 1.9e-68 263.5 268 73.1
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 3.2e-68 262.7 244 57.4
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 4.1e-68 262.3 244 56.6
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 7.0e-68 261.5 270 54.4
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 7.0e-68 261.5 243 57.2
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 9.2e-68 261.2 254 55.9
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 9.2e-68 261.2 269 72.1
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 1.2e-67 260.8 244 57.0
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 2.7e-67 259.6 271 54.6
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 2.7e-67 259.6 251 75.3
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 4.6e-67 258.8 252 57.9
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 7.8e-67 258.1 244 57.4
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 7.8e-67 258.1 244 57.4
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 1.3e-66 257.3 244 57.8
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 1.3e-66 257.3 244 57.4
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.7e-66 256.9 277 62.5
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 2.3e-66 256.5 232 59.9
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 3.9e-66 255.8 277 62.1
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 3.9e-66 255.8 258 55.8
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 8.6e-66 254.6 240 56.7
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.5e-65 253.8 242 56.6
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.5e-65 253.8 242 56.6
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 1.5e-65 253.8 254 55.5
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 2.5e-65 253.1 241 76.3
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 3.3e-65 252.7 244 56.1
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 3.3e-65 252.7 244 56.1
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 3.3e-65 252.7 266 55.3
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 4.3e-65 252.3 244 56.6
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 5.6e-65 251.9 259 53.7
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 9.5e-65 251.1 246 54.9
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 1.6e-64 250.4 245 61.2
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 6.2e-64 248.4 266 51.1
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 1.1e-63 247.7 250 67.6
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 1.8e-63 246.9 269 51.3
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 2.3e-63 246.5 241 56.8
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 4.0e-63 245.7 241 56.0
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 1.5e-62 243.8 261 53.3
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 3.4e-62 242.7 267 68.9
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 3.4e-62 242.7 295 49.2
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 3.4e-62 242.7 239 54.4
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 2.2e-61 240.0 244 70.1
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 2.9e-61 239.6 244 52.5
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 4.9e-61 238.8 274 52.6
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 1.9e-60 236.9 245 52.7
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 4.1e-60 235.7 244 51.6
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 3.5e-59 232.6 242 53.3
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 4.6e-59 232.3 284 65.8
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 7.8e-59 231.5 243 52.3
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 7.8e-59 231.5 244 50.8
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 3.9e-58 229.2 244 51.6
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 5.1e-58 228.8 134 84.3
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 5.1e-58 228.8 241 53.5
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 7.3e-57 224.9 242 53.3
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 1.8e-55 220.3 159 71.7
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 6.8e-55 218.4 244 49.2
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 8.9e-55 218.0 159 71.1
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 8.3e-53 211.5 244 48.0
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 3.0e-50 203.0 244 48.8
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.1e-48 196.8 210 54.8
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 5.8e-46 188.7 246 46.3
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 4.9e-45 185.7 270 42.6
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 2.4e-44 183.3 212 69.8
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 5.6e-41 172.2 234 46.2
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 5.8e-30 135.6 160 49.4
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 1.1e-28 131.3 270 35.2
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 9.3e-28 128.3 203 42.9
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 2.3e-26 123.6 86 70.9
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 4.8e-24 115.9 77 75.3
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 4.8e-24 115.9 150 45.3
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 9.0e-23 111.7 164 41.5
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 2.6e-22 110.2 133 47.4
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 9.3e-20 101.7 132 46.2
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 4.6e-19 99.4 230 30.0
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 8.7e-18 95.1 67 71.6
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 5.5e-12 75.9 145 35.2
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.8e-10 70.9 68 54.4
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.8e-10 70.9 48 66.7
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 1.1e-09 68.2 51 66.7
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 1.9e-09 67.4 37 83.8
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 1.9e-09 67.4 37 83.8
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 1.3e-08 64.7 60 53.3
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-07 61.6 63 50.8
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 3.1e-07 60.1 62 51.6
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 4.1e-07 59.7 95 40.0
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 1.5e-06 57.8 58 50.0


User provided reference genes

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