Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold120G32882 Striga asiatica HOM05D005079 ORTHO05D006362 0.0e+00 1476.1 719 100.0
SalBow6G6450 Salvia bowleyana HOM05D005079 ORTHO05D006362 2.3e-299 1031.9 723 70.7
Migut.A00986 Erythranthe guttata HOM05D005079 ORTHO05D006362 4.4e-295 1017.7 724 69.2
MSTRG.25528 Avicennia marina HOM05D005079 ORTHO05D006362 6.0e-284 980.7 725 67.9
TAR629G2205 Trochodendron aralioides HOM05D005079 ORTHO05D006362 3.2e-253 878.6 728 58.8
Cc08_g12490 Coffea canephora HOM05D005079 ORTHO05D006362 1.2e-252 876.7 727 59.7
QL12p012230 Quercus lobata HOM05D005079 ORTHO05D006362 1.5e-247 859.8 731 59.1
CiPaw.11G153800 Carya illinoinensis HOM05D005079 ORTHO05D006362 2.6e-247 859.0 729 58.6
Rhsim02G0165500 Rhododendron simsii HOM05D005079 ORTHO05D006362 7.6e-247 857.4 727 58.3
Hma1.2p1_1172F.1_g263540 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 2.2e-246 855.9 726 58.4
vmacro00317 Vaccinium macrocarpon HOM05D005079 ORTHO05D006362 3.2e-245 852.0 726 58.0
CSS0023122 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 1.9e-242 842.8 723 58.0
HanXRQChr17g0549661 Helianthus annuus HOM05D005079 ORTHO05D006362 4.3e-242 841.6 717 57.2
COL.COLO4_37183 Corchorus olitorius HOM05D005079 ORTHO05D006362 1.6e-241 839.7 728 58.5
Potri.003G076500 Populus trichocarpa HOM05D005079 ORTHO05D006362 1.6e-241 839.7 726 57.3
GSVIVG01001320001 Vitis vinifera HOM05D005079 ORTHO05D006362 4.8e-241 838.2 728 57.3
Hma1.2p1_1786F.1_g302370 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 6.3e-241 837.8 808 52.8
Solyc06g060670.4 Solanum lycopersicum HOM05D005079 ORTHO05D006362 8.2e-241 837.4 738 56.9
Sopen06g020790 Solanum pennellii HOM05D005079 ORTHO05D006362 2.4e-240 835.9 726 57.2
RcHm_v2.0_Chr7g0203171 Rosa chinensis HOM05D005079 ORTHO05D006362 5.3e-240 834.7 723 57.5
Nn1g01009 Nelumbo nucifera HOM05D005079 ORTHO05D006362 3.4e-239 832.0 729 57.6
Nitab4.5_0000618g0020 Nicotiana tabacum HOM05D005079 ORTHO05D006362 5.9e-239 831.2 722 57.1
CAN.G1037.9 Capsicum annuum HOM05D005079 ORTHO05D006362 7.7e-239 830.9 726 56.6
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 1.7e-238 829.7 728 57.0
MD04G1063800 Malus domestica HOM05D005079 ORTHO05D006362 5.0e-238 828.2 728 56.2
FAN18G1282 Fragaria x ananassa HOM05D005079 ORTHO05D006362 2.5e-237 825.9 721 57.0
Actinidia14431 Actinidia chinensis HOM05D005079 ORTHO05D006362 4.2e-237 825.1 722 57.9
FAN04G2358 Fragaria x ananassa HOM05D005079 ORTHO05D006362 1.0e-235 820.5 721 56.7
FvH4_5g18820 Fragaria vesca HOM05D005079 ORTHO05D006362 1.8e-235 819.7 721 56.9
Prupe.5G069000 Prunus persica HOM05D005079 ORTHO05D006362 3.0e-235 818.9 729 54.9
Gohir.A03G008400 Gossypium hirsutum HOM05D005079 ORTHO05D006362 5.1e-235 818.1 729 56.2
MBI04_g09493_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 5.1e-235 818.1 727 55.8
Sabra03G0047100 Salix brachista HOM05D005079 ORTHO05D006362 5.1e-235 818.1 728 56.5
Gorai.003G171100 Gossypium raimondii HOM05D005079 ORTHO05D006362 8.8e-235 817.4 729 56.7
Cpa.g.sc29.152 Carica papaya HOM05D005079 ORTHO05D006362 1.5e-234 816.6 729 56.5
PSO017G3550 Papaver somniferum HOM05D005079 ORTHO05D006362 2.0e-234 816.2 734 55.7
Duzib205G0133 Durio zibethinus HOM05D005079 ORTHO05D006362 9.7e-234 813.9 728 56.6
Thecc.03G252100 Theobroma cacao HOM05D005079 ORTHO05D006362 3.7e-233 812.0 728 56.6
Gohir.D03G162500 Gossypium hirsutum HOM05D005079 ORTHO05D006362 1.1e-232 810.4 729 56.8
CANSAT21G1873 Cannabis sativa HOM05D005079 ORTHO05D006362 2.6e-231 805.8 735 54.8
Psat4g071960 Pisum sativum HOM05D005079 ORTHO05D006362 2.6e-231 805.8 729 54.7
TWI81G0601 Tripterygium wilfordii HOM05D005079 ORTHO05D006362 2.6e-231 805.8 730 55.1
Ciclev10023597m.g Citrus clementina HOM05D005079 ORTHO05D006362 5.0e-230 801.6 728 55.9
Glyma.05G059000 Glycine max HOM05D005079 ORTHO05D006362 1.4e-229 800.0 728 55.1
PGR031G3122 Punica granatum HOM05D005079 ORTHO05D006362 2.5e-229 799.3 726 55.6
Lalb_Chr16g0386651 Lupinus albus HOM05D005079 ORTHO05D006362 5.5e-229 798.1 729 55.0
Aqoxy7G00758 Aquilegia oxysepala HOM05D005079 ORTHO05D006362 7.9e-228 794.3 727 55.3
Medtr4g100980 Medicago truncatula HOM05D005079 ORTHO05D006362 1.4e-227 793.5 730 54.7
ATR0317G049 Amborella trichopoda HOM05D005079 ORTHO05D006362 3.0e-227 792.3 717 53.8
Ca_21961_v3 Cicer arietinum L. HOM05D005079 ORTHO05D006362 5.1e-227 791.6 729 53.1
Lj4g0012374 Lotus japonicus HOM05D005079 ORTHO05D006362 5.1e-227 791.6 728 55.1
TPR.G37701 Trifolium pratense HOM05D005079 ORTHO05D006362 1.1e-226 790.4 729 54.2
ECA232G1687 Erigeron canadensis HOM05D005079 ORTHO05D006362 3.3e-226 788.9 728 55.6
MELO3C005534.2 Cucumis melo HOM05D005079 ORTHO05D006362 5.7e-226 788.1 734 54.4
Eucgr.D02075 Eucalyptus grandis HOM05D005079 ORTHO05D006362 5.7e-226 788.1 728 54.9
Haze_07920 Corylus avellana HOM05D005079 ORTHO05D006362 6.3e-225 784.6 729 55.0
Sc01g0008470 Simmondsia chinensis HOM05D005079 ORTHO05D006362 6.3e-225 784.6 731 54.0
CsaV3_5G004210 Cucumis sativus L. HOM05D005079 ORTHO05D006362 8.2e-225 784.3 734 54.2
Sed0023601 Sechium edule HOM05D005079 ORTHO05D006362 2.4e-224 782.7 734 53.7
Cfa012713 Carpinus fangiana HOM05D005079 ORTHO05D006362 5.3e-224 781.6 729 54.6
Migut.A00942 Erythranthe guttata HOM05D005079 ORTHO05D006362 1.2e-223 780.4 518 72.2
Lj8C262G4 Lonicera japonica HOM05D005079 ORTHO05D006362 7.7e-223 777.7 647 59.0
Hund11595 Selenicereus undatus HOM05D005079 ORTHO05D006362 1.0e-222 777.3 751 52.3
AUR62042789 Chenopodium quinoa HOM05D005079 ORTHO05D006362 2.5e-221 772.7 729 52.4
FAN08G1452 Fragaria x ananassa HOM05D005079 ORTHO05D006362 3.2e-221 772.3 737 54.0
CARHR223060 Cardamine hirsuta HOM05D005079 ORTHO05D006362 6.7e-219 764.6 721 54.1
THA.LOC104815493 Tarenaya hassleriana HOM05D005079 ORTHO05D006362 2.4e-216 756.1 721 53.0
A01p20660 Brassica napus HOM05D005079 ORTHO05D006362 3.1e-216 755.7 720 53.3
BcaC09g50374 Brassica carinata HOM05D005079 ORTHO05D006362 4.1e-216 755.4 720 53.5
BraA01t02000Z Brassica rapa HOM05D005079 ORTHO05D006362 7.0e-216 754.6 720 53.2
EL10Ac5g13073 Beta vulgaris HOM05D005079 ORTHO05D006362 1.6e-215 753.4 733 52.1
VMungo0540G1603 Vigna mungo HOM05D005079 ORTHO05D006362 7.7e-215 751.1 726 53.0
Phvul.006G006200 Phaseolus vulgaris HOM05D005079 ORTHO05D006362 1.0e-214 750.7 728 53.4
Sp7g15190 Schrenkiella parvula HOM05D005079 ORTHO05D006362 1.0e-214 750.7 720 52.6
BcaNung00170 Brassica carinata HOM05D005079 ORTHO05D006362 1.7e-214 750.0 721 53.3
C01p26130 Brassica napus HOM05D005079 ORTHO05D006362 1.7e-214 750.0 720 52.9
BolC1t02557H Brassica oleracea HOM05D005079 ORTHO05D006362 1.7e-214 750.0 720 52.9
Aa31LG2G12700 Aethionema arabicum HOM05D005079 ORTHO05D006362 2.2e-214 749.6 721 52.7
Atru.chr9.1320 Acer truncatum HOM05D005079 ORTHO05D006362 5.5e-213 745.0 648 57.9
Carub.0007s2483 Capsella rubella HOM05D005079 ORTHO05D006362 9.4e-213 744.2 723 53.3
Hma1.2p1_1172F.1_g263550 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 8.0e-212 741.1 629 57.6
AL7G38200 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 1.0e-211 740.7 724 52.6
AT4G16570 Arabidopsis thaliana HOM05D005079 ORTHO05D006362 5.2e-211 738.4 723 52.8
Thhalv10024535m.g Eutrema salsugineum HOM05D005079 ORTHO05D006362 2.6e-210 736.1 721 52.6
Manes.01G080200 Manihot esculenta HOM05D005079 ORTHO05D006362 2.6e-210 736.1 726 51.5
Zm00001eb379320 Zea mays HOM05D005079 ORTHO05D006362 5.7e-210 734.9 727 51.4
unitig_744.g24463 Utricularia gibba HOM05D005079 ORTHO05D006362 1.7e-209 733.4 719 53.7
ClCG01G004030 Citrullus lanatus HOM05D005079 ORTHO05D006362 8.3e-209 731.1 727 51.7
Os06g0105500 Oryza sativa ssp. japonica HOM05D005079 ORTHO05D006362 5.3e-208 728.4 716 51.3
Dinv39143 Davidia involucrata HOM05D005079 ORTHO05D006362 1.2e-207 727.2 611 57.6
Peaxi162Scf02065g00020 Petunia axillaris HOM05D005079 ORTHO05D006362 8.0e-204 714.5 653 55.7
Nitab4.5_0008754g0010 Nicotiana tabacum HOM05D005079 ORTHO05D006362 5.0e-198 695.3 786 48.1
AUR62007514 Chenopodium quinoa HOM05D005079 ORTHO05D006362 1.5e-194 683.7 725 48.7
Ah.12g056870 Amaranthus hybridus HOM05D005079 ORTHO05D006362 8.6e-190 667.9 730 47.7
Oeu020426.1 Olea europaea HOM05D005079 ORTHO05D006362 1.6e-164 583.9 441 66.0
Migut.N00546 Erythranthe guttata HOM05D005079 ORTHO05D006362 1.2e-162 577.8 435 67.8
HPP92_008921 Vanilla planifolia HOM05D005079 ORTHO05D006362 1.4e-155 554.3 525 51.0
AagrBONN_evm.TU.Sc2ySwM_344.1170 Anthoceros agrestis HOM05D005079 ORTHO05D006362 2.9e-153 546.6 773 40.0
Pp3c6_22100 Physcomitrium patens HOM05D005079 ORTHO05D006362 6.4e-153 545.4 730 41.0
SMO365G0062 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 4.2e-144 516.2 719 41.0
CSS0009127 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 1.2e-138 498.0 723 41.2
AUR62044148 Chenopodium quinoa HOM05D005079 ORTHO05D006362 2.2e-137 493.8 644 43.3
Lsat_1_v5_gn_5_188000 Lactuca sativa HOM05D005079 ORTHO05D006362 3.2e-136 490.0 483 53.8
SMO176G0009 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 3.4e-130 469.9 721 39.1
SMO014G0029 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 2.0e-122 444.1 717 38.4
SMO304G0004 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 2.5e-112 410.6 677 38.6
FAN13G2148 Fragaria x ananassa HOM05D005079 ORTHO05D006362 9.4e-104 382.1 502 40.2
SMO304G0051 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 5.2e-102 376.3 616 36.5
SMO304G0113 Selaginella moellendorffii HOM05D013654 ORTHO05D006362 1.9e-96 357.8 609 37.1
SMO014G0007 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 1.2e-95 355.1 722 34.6
CBR_g41210 Chara braunii HOM05D005079 ORTHO05D006362 5.4e-91 339.7 705 33.9
PGSC0003DMG400013813 Solanum tuberosum HOM05D005079 ORTHO05D006362 2.0e-90 337.8 291 54.3
HPP92_028199 Vanilla planifolia HOM05D005079 ORTHO05D006362 1.8e-83 314.7 492 38.0
Mapoly0021s0157 Marchantia polymorpha HOM05D005079 ORTHO05D006362 3.3e-72 277.3 351 46.4
Migut.N00545 Erythranthe guttata HOM05D005079 ORTHO05D006362 6.2e-71 273.1 191 63.9
CDE04G1017 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 2.8e-63 247.7 430 34.0
Hma1.2p1_1786F.1_g302380 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 4.0e-62 243.8 192 57.8
MBI09_g47605_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 5.8e-61 240.0 175 62.3
Mapoly0021s0158 Marchantia polymorpha HOM05D005079 ORTHO05D006362 2.9e-52 211.1 251 40.6
Glyma.17G141300 Glycine max HOM05D005079 ORTHO05D006362 3.9e-49 200.7 148 58.1
SEGI_13987 Sequoiadendron giganteum HOM05D005079 ORTHO05D006362 1.2e-45 189.1 208 47.1
AL7G38250 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 1.3e-44 185.7 154 64.9
CDE04G3241 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 6.2e-39 166.8 151 56.3
Dinv39142 Davidia involucrata HOM05D005079 ORTHO05D006362 1.4e-27 129.0 97 70.1
RcHm_v2.0_Chr3g0497351 Rosa chinensis HOM05D005079 ORTHO05D006362 2.3e-25 121.7 96 58.3
BolC1t01100H Brassica oleracea HOM05D005079 ORTHO05D006362 3.1e-22 111.3 88 62.5
Cre02.g141626 Chlamydomonas reinhardtii HOM05D005079 ORTHO05D006362 4.0e-22 110.9 543 23.9
C01p11340 Brassica napus HOM05D005079 ORTHO05D006362 2.0e-21 108.6 116 55.2
BolC1t01102H Brassica oleracea HOM05D005079 ORTHO05D006362 2.0e-21 108.6 116 55.2
SEGI_21709 Sequoiadendron giganteum HOM05D005079 ORTHO05D006362 4.9e-20 104.0 80 56.2
MCO05G104 Micromonas commoda HOM05D005079 ORTHO05D006362 6.7e-17 93.6 299 29.1
SHI11315 Sapria himalayana HOM05D005079 ORTHO05D006362 9.6e-16 89.7 86 54.7
MCO07G501 Micromonas commoda HOM05D005079 ORTHO05D006362 1.3e-15 89.4 297 30.6
HPP92_008920 Vanilla planifolia HOM05D005079 ORTHO05D006362 2.8e-15 88.2 73 58.9
PRCOL_00002472 Prasinoderma coloniale HOM05D005079 ORTHO05D006362 6.3e-15 87.0 375 25.6
CDE04G0837 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 4.5e-13 80.9 72 52.8
Lj4g0004414 Lotus japonicus HOM05D005079 ORTHO05D006362 4.5e-13 80.9 81 50.6
PRCOL_00004569 Prasinoderma coloniale HOM05D005079 ORTHO05D006362 5.9e-13 80.5 411 22.9
AL7G38220 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 3.8e-12 77.8 65 60.0
HPP92_028200 Vanilla planifolia HOM05D005079 ORTHO05D006362 1.9e-11 75.5 85 50.6
MCO11G565 Micromonas commoda HOM05D005079 ORTHO05D034446 5.5e-11 73.9 292 24.7
PRCOL_00004414 Prasinoderma coloniale HOM05D005079 ORTHO05D034446 1.9e-08 65.5 298 23.8
Thhalv10000400m.g Eutrema salsugineum HOM05D005079 ORTHO05D006362 6.9e-06 57.0 39 69.2


User provided reference genes

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