Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 8.8e-131 470.3 242 100.0
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 8.6e-102 374.0 244 82.8
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 1.1e-101 373.6 242 80.6
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 5.2e-99 364.8 241 78.8
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 7.6e-98 360.9 243 77.8
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.6e-95 353.2 246 77.6
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 5.1e-94 348.2 241 76.8
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.5e-93 345.9 239 77.0
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 8.1e-92 340.9 239 75.7
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 1.1e-91 340.5 245 74.3
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 3.1e-91 339.0 239 75.3
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 2.4e-88 329.3 241 72.6
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 3.2e-88 328.9 241 71.4
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 3.2e-88 328.9 241 73.4
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 4.2e-88 328.6 227 77.1
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 1.6e-87 326.6 241 71.0
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 1.6e-87 326.6 241 73.0
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 2.1e-87 326.2 241 75.5
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 2.1e-87 326.2 241 75.5
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 3.5e-87 325.5 240 70.4
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 4.6e-87 325.1 239 72.8
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 7.8e-87 324.3 241 72.6
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 7.8e-87 324.3 241 72.2
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.3e-86 323.6 239 72.4
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.7e-86 323.2 241 72.2
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.7e-86 323.2 241 70.5
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.3e-86 322.8 242 71.5
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 3.9e-86 322.0 241 72.2
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 3.3e-85 318.9 239 69.5
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 3.3e-85 318.9 241 70.5
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 4.3e-85 318.5 241 69.3
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 4.3e-85 318.5 241 72.2
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 5.6e-85 318.2 241 70.5
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 7.3e-85 317.8 241 71.0
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 9.6e-85 317.4 241 71.0
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.3e-84 317.0 241 70.1
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 1.3e-84 317.0 241 69.3
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 2.8e-84 315.8 241 71.4
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 6.2e-84 314.7 241 70.5
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 1.1e-83 313.9 259 66.8
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 1.4e-83 313.5 241 70.5
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.4e-83 313.5 245 71.4
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 5.3e-83 311.6 241 70.1
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.3e-83 311.6 241 68.9
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 6.9e-83 311.2 247 70.0
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 9.0e-83 310.8 241 68.9
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 1.5e-82 310.1 241 68.0
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 2.0e-82 309.7 241 69.7
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 2.6e-82 309.3 236 70.8
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.4e-82 308.5 241 68.5
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.4e-82 308.5 225 70.7
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 5.8e-82 308.1 241 68.9
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.3e-81 307.0 243 69.1
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 1.3e-81 307.0 241 68.5
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 2.2e-81 306.2 242 67.8
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 2.9e-81 305.8 241 68.9
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 4.9e-81 305.1 242 67.4
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.1e-80 303.9 241 68.9
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.4e-80 303.5 242 67.4
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 3.2e-80 302.4 241 68.5
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.2e-80 302.4 241 68.5
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 1.2e-79 300.4 243 65.4
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.6e-79 300.1 242 66.9
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 2.1e-79 299.7 241 66.8
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 2.7e-79 299.3 241 67.6
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 3.5e-79 298.9 241 67.2
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 4.6e-79 298.5 238 67.2
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 6.0e-79 298.1 244 64.8
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 1.3e-78 297.0 241 67.2
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.3e-78 297.0 241 68.5
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 1.7e-78 296.6 243 66.3
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.7e-78 296.6 241 69.7
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 5.1e-78 295.0 236 66.5
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 5.1e-78 295.0 238 67.6
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 5.1e-78 295.0 239 67.4
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 5.1e-78 295.0 241 66.8
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.5e-77 293.5 241 66.4
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 9.6e-77 290.8 241 66.0
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 9.6e-77 290.8 235 64.7
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 1.3e-76 290.4 246 65.0
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 1.3e-76 290.4 246 65.4
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 8.1e-76 287.7 205 73.2
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 8.1e-76 287.7 202 72.8
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.8e-75 286.6 238 63.9
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 2.4e-75 286.2 241 66.0
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 6.9e-75 284.6 242 65.3
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 9.0e-75 284.3 241 65.1
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.2e-74 283.9 240 62.9
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.2e-74 283.9 239 61.1
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 1.5e-74 283.5 242 64.5
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 2.0e-74 283.1 246 65.4
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.0e-74 283.1 238 61.3
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 2.0e-74 283.1 238 63.4
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 2.6e-74 282.7 238 61.8
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.6e-74 282.7 241 65.6
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.5e-74 282.0 192 74.0
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 5.8e-74 281.6 246 65.0
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 5.8e-74 281.6 241 65.1
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.3e-73 280.4 241 65.1
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.3e-73 280.4 241 65.1
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.3e-73 280.4 241 65.1
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 1.7e-73 280.0 240 60.8
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 2.9e-73 279.3 240 62.1
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 2.9e-73 279.3 238 62.2
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.9e-73 279.3 238 61.3
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.9e-73 279.3 241 65.1
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 3.8e-73 278.9 238 62.2
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 4.9e-73 278.5 241 64.7
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 6.4e-73 278.1 240 61.7
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 8.4e-73 277.7 238 60.9
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 8.4e-73 277.7 240 61.7
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 1.1e-72 277.3 240 61.7
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.4e-72 276.9 238 60.5
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.2e-72 275.4 241 63.1
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 1.6e-71 273.5 239 63.6
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 3.5e-71 272.3 238 59.2
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 6.0e-71 271.6 238 60.9
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 7.9e-71 271.2 303 53.8
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 2.3e-70 269.6 245 60.4
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 2.3e-70 269.6 236 61.4
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 3.0e-70 269.2 238 58.8
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 3.9e-70 268.9 240 59.2
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 5.1e-70 268.5 238 58.4
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 4.8e-68 261.9 242 59.1
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.1e-67 260.8 250 61.2
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 1.4e-67 260.4 239 59.0
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 1.4e-67 260.4 239 59.0
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 1.4e-67 260.4 239 59.0
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 3.4e-66 255.8 239 58.2
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 2.2e-65 253.1 310 49.7
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 7.1e-64 248.1 242 56.6
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 1.2e-63 247.3 377 45.6
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 3.9e-62 242.3 246 58.1
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 7.4e-61 238.0 239 52.7
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.6e-60 236.9 241 55.6
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.7e-57 226.9 243 57.6
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.0e-54 217.6 240 51.2
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 3.7e-52 209.1 242 50.0
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 4.8e-52 208.8 122 82.8
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 8.2e-52 208.0 238 49.6
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 6.9e-51 204.9 133 72.9
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 9.0e-51 204.5 138 74.6
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.2e-50 204.1 158 68.4
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.0e-50 203.4 222 55.0
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 8.5e-49 198.0 158 65.8
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 9.4e-48 194.5 254 46.9
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 3.9e-46 189.1 242 48.8
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 4.3e-45 185.7 269 43.1
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.1e-43 181.0 202 53.5
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 8.5e-41 171.4 105 77.1
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 4.4e-37 159.1 279 38.7
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 4.1e-35 152.5 137 64.2
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 7.0e-35 151.8 270 39.6
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 9.1e-35 151.4 135 65.9
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 1.5e-32 144.1 101 68.3
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 2.4e-27 126.7 91 64.8
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 9.1e-27 124.8 95 63.2
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 1.5e-24 117.5 111 64.9
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 3.1e-19 99.8 94 57.4
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 7.7e-18 95.1 79 67.1
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 2.2e-17 93.6 126 49.2
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 1.5e-16 90.9 99 39.4
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 1.9e-16 90.5 54 77.8
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 3.2e-16 89.7 79 63.3
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 9.4e-16 88.2 80 57.5
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 2.7e-15 86.7 93 43.0
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.7e-12 77.4 101 56.4
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 6.3e-12 75.5 81 49.4
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 2.9e-09 66.6 140 38.6
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 2.1e-07 60.5 159 28.9


User provided reference genes

Program Settings