Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 5.3e-146 521.2 292 100.0
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 1.4e-45 187.6 361 43.8
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 2.1e-41 173.7 345 44.6
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 1.3e-40 171.0 368 43.5
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 5.8e-36 155.6 383 39.4
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 1.4e-34 151.0 316 41.5
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 1.3e-32 144.4 304 40.8
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 1.8e-32 144.1 351 39.3
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 6.7e-32 142.1 313 40.3
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 2.5e-31 140.2 315 40.0
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 7.4e-31 138.7 313 39.6
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 1.8e-29 134.0 309 39.8
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 3.1e-29 133.3 396 35.1
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 1.5e-28 131.0 330 39.1
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.3e-27 127.9 330 39.1
SGA_v2.0_scaffold19G08554 Striga asiatica HOM05D004095 ORTHO05D003197 4.9e-27 125.9 343 35.6
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 8.4e-27 125.2 325 38.2
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.9e-26 124.0 323 37.5
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 6.0e-25 119.0 333 36.3
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 2.5e-23 113.6 333 35.4
CAN.G1517.6 Capsicum annuum HOM05D004095 ORTHO05D003197 5.6e-23 112.5 313 36.4
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 5.6e-23 112.5 336 32.1
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.3e-22 111.3 333 34.8
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 2.1e-22 110.5 326 31.3
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.7e-22 109.8 333 34.8
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 4.8e-22 109.4 310 36.5
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.1e-21 108.2 328 33.8
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 1.8e-21 107.5 298 40.6
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 3.1e-21 106.7 322 37.6
DCAR_009498 Daucus carota HOM05D004095 ORTHO05D003197 4.0e-21 106.3 381 31.0
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 5.3e-21 105.9 369 33.6
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 9.0e-21 105.1 335 32.8
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 1.5e-20 104.4 308 38.3
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.6e-20 103.6 306 35.0
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 4.5e-20 102.8 358 35.2
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 5.8e-20 102.4 339 35.1
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 5.8e-20 102.4 306 35.3
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 5.8e-20 102.4 324 36.4
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 5.8e-20 102.4 322 36.3
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 1.0e-19 101.7 226 35.8
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.2e-19 100.5 304 31.2
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 3.8e-19 99.8 325 33.2
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 3.8e-19 99.8 346 35.3
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 4.9e-19 99.4 314 37.6
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 4.9e-19 99.4 300 33.7
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.9e-18 97.4 317 35.6
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 2.5e-18 97.1 335 39.4
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 2.5e-18 97.1 317 30.0
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 4.2e-18 96.3 324 37.7
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 4.2e-18 96.3 343 31.5
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 5.5e-18 95.9 339 34.2
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 9.3e-18 95.1 342 37.4
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 1.2e-17 94.7 312 33.0
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 2.7e-17 93.6 318 34.6
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 2.7e-17 93.6 359 33.1
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 4.6e-17 92.8 320 29.1
Peaxi162Scf00064g00737 Petunia axillaris HOM05D004095 ORTHO05D003197 6.0e-17 92.4 260 38.5
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 3.0e-16 90.1 337 38.0
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 5.1e-16 89.4 318 33.6
Migut.O00908 Erythranthe guttata HOM05D004095 ORTHO05D003197 5.1e-16 89.4 294 29.6
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 6.7e-16 89.0 320 34.1
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 1.1e-15 88.2 216 31.9
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 2.5e-15 87.0 311 32.5
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 3.3e-15 86.7 330 33.9
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 3.3e-15 86.7 344 28.5
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 5.7e-15 85.9 371 29.9
Migut.N03174 Erythranthe guttata HOM05D004095 ORTHO05D003197 7.4e-15 85.5 293 33.4
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 7.4e-15 85.5 295 34.6
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.3e-14 84.7 295 34.6
Actinidia15439 Actinidia chinensis HOM05D004095 ORTHO05D003197 1.6e-14 84.3 193 42.0
Actinidia17001 Actinidia chinensis HOM05D004095 ORTHO05D003197 1.6e-14 84.3 210 38.1
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 1.6e-14 84.3 350 30.3
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 4.8e-14 82.8 324 34.6
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 4.8e-14 82.8 326 28.8
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 6.3e-14 82.4 309 35.0
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 1.8e-13 80.9 330 31.8
Lsat_1_v5_gn_8_29800 Lactuca sativa HOM05D004095 ORTHO05D003197 1.8e-13 80.9 171 47.4
unitig_747.g21527 Utricularia gibba HOM05D002344 ORTHO05D002954 1.8e-13 80.9 169 46.7
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 2.4e-13 80.5 334 32.9
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 5.3e-13 79.3 223 32.7
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 6.9e-13 79.0 313 28.1
Prupe.1G362500 Prunus persica HOM05D004095 ORTHO05D003197 9.0e-13 78.6 316 26.6
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 1.5e-12 77.8 320 32.8
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 2.0e-12 77.4 318 31.4
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 3.4e-12 76.6 321 33.3
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 3.4e-12 76.6 235 30.2
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 3.4e-12 76.6 338 30.5
BraA06t24727Z Brassica rapa HOM05D008819 ORTHO05D003197 7.6e-12 75.5 307 26.7
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 7.6e-12 75.5 328 30.5
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 7.6e-12 75.5 230 30.0
Aqoxy6G02168 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 1.3e-11 74.7 305 32.5
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.3e-11 74.7 375 27.7
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 2.2e-11 73.9 309 27.8
A03p63990 Brassica napus HOM05D004095 ORTHO05D003197 2.9e-11 73.6 368 32.1
C07p23350 Brassica napus HOM05D008819 ORTHO05D003197 2.9e-11 73.6 307 30.9
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 2.9e-11 73.6 226 28.8
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 2.9e-11 73.6 302 30.5
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 2.9e-11 73.6 344 29.4
AL7G15100 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 3.8e-11 73.2 356 30.3
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 3.8e-11 73.2 324 28.1
BcaNung03339 Brassica carinata HOM05D008819 ORTHO05D003197 8.5e-11 72.0 307 30.6
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 8.5e-11 72.0 211 31.3
BolC7t42868H Brassica oleracea HOM05D008819 ORTHO05D003197 1.1e-10 71.6 311 28.0
BraA03t15466Z Brassica rapa HOM05D004095 ORTHO05D003197 1.1e-10 71.6 373 29.8
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 1.1e-10 71.6 235 27.7
BcaC05g25908 Brassica carinata HOM05D008819 ORTHO05D003197 1.4e-10 71.2 303 28.4
C05p18590 Brassica napus HOM05D008819 ORTHO05D003197 1.4e-10 71.2 303 28.4
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 1.9e-10 70.9 383 31.3
AT1G75860 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 2.5e-10 70.5 308 33.4
Dinv39538 Davidia involucrata HOM05D004095 ORTHO05D003197 2.5e-10 70.5 154 49.4
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.5e-10 70.5 216 31.9
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 3.2e-10 70.1 304 28.9
A01p02760 Brassica napus HOM05D004095 ORTHO05D003197 5.5e-10 69.3 325 33.2
A06p16240 Brassica napus HOM05D008819 ORTHO05D003197 5.5e-10 69.3 312 26.6
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 5.5e-10 69.3 204 35.8
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 7.2e-10 68.9 290 25.2
Ca_13423_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 7.2e-10 68.9 321 34.0
Ca_13439_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 7.2e-10 68.9 321 34.0
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 9.3e-10 68.6 223 30.9
BcaNung00778 Brassica carinata HOM05D004095 ORTHO05D003197 9.3e-10 68.6 336 32.4
Carub.0007s0428 Capsella rubella HOM05D004095 ORTHO05D003197 1.6e-09 67.8 348 30.7
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 1.6e-09 67.8 393 31.6
Cfa005239 Carpinus fangiana HOM05D004095 ORTHO05D003197 2.1e-09 67.4 312 31.7
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 2.1e-09 67.4 303 28.4
HanXRQChr12g0366821 Helianthus annuus HOM05D004095 ORTHO05D003197 2.1e-09 67.4 125 50.4
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 2.7e-09 67.0 395 30.4
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 2.7e-09 67.0 306 32.4
BolC5t30570H Brassica oleracea HOM05D008819 ORTHO05D003197 3.6e-09 66.6 304 28.3
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 3.6e-09 66.6 258 26.7
HPP92_007327 Vanilla planifolia HOM05D004095 ORTHO05D003197 3.6e-09 66.6 321 26.8
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 4.6e-09 66.2 299 28.1
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 4.6e-09 66.2 308 25.3
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 4.6e-09 66.2 342 30.1
GSVIVG01009951001 Vitis vinifera HOM05D004095 ORTHO05D003197 6.1e-09 65.9 126 49.2
AT1G20100 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 7.9e-09 65.5 313 30.4
BraA01t00262Z Brassica rapa HOM05D004095 ORTHO05D003197 1.0e-08 65.1 344 32.6
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 1.0e-08 65.1 255 29.0
Medtr1g034990 Medicago truncatula HOM05D013708 ORTHO05D003197 1.8e-08 64.3 307 32.9
unitig_0.g2088 Utricularia gibba HOM05D004095 ORTHO05D003197 1.8e-08 64.3 271 28.4
BcaB07g32025 Brassica carinata HOM05D008819 ORTHO05D003197 2.3e-08 63.9 304 29.9
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 2.3e-08 63.9 294 27.6
Sp7g33720 Schrenkiella parvula HOM05D004095 ORTHO05D003197 3.9e-08 63.2 358 28.8
Ah.00g000350 Amaranthus hybridus HOM05D004095 ORTHO05D003197 5.1e-08 62.8 230 40.9
GSVIVG01018727001 Vitis vinifera HOM05D004095 ORTHO05D003197 5.1e-08 62.8 189 39.2
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 8.7e-08 62.0 247 30.0
RcHm_v2.0_Chr6g0303321 Rosa chinensis HOM05D004095 ORTHO05D003197 8.7e-08 62.0 294 30.3
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 1.1e-07 61.6 386 26.2
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 1.1e-07 61.6 258 26.4
Carub.0001s1963 Capsella rubella HOM05D008819 ORTHO05D003197 1.5e-07 61.2 205 28.8
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 1.5e-07 61.2 86 40.7
BcaNung05051 Brassica carinata HOM05D004095 ORTHO05D003197 3.3e-07 60.1 360 28.9
Thhalv10008464m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 4.3e-07 59.7 311 27.0
Sp5g31000 Schrenkiella parvula HOM05D008819 ORTHO05D003197 4.3e-07 59.7 241 28.6
PGR119G1825 Punica granatum HOM05D004095 ORTHO05D003197 5.7e-07 59.3 181 39.8
QL11p050200 Quercus lobata HOM05D004095 ORTHO05D003197 5.7e-07 59.3 326 31.0
Aa31LG4G6060 Aethionema arabicum HOM05D008819 ORTHO05D003197 7.4e-07 58.9 314 33.1
MBI05_g23379_MAGBIO Magnolia biondii HOM05D004095 ORTHO05D003197 7.4e-07 58.9 180 38.9
Zm00001eb398970 Zea mays HOM05D029520 ORTHO05D030405 7.4e-07 58.9 155 43.9
Carub.0002s2277 Capsella rubella HOM05D008819 ORTHO05D003197 9.7e-07 58.5 320 29.7
RcHm_v2.0_Chr2g0098961 Rosa chinensis HOM05D024588 ORTHO05D003197 9.7e-07 58.5 162 37.0
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.3e-06 58.2 140 31.4
ECA233G2314 Erigeron canadensis HOM05D004095 ORTHO05D003197 2.2e-06 57.4 188 41.5
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 2.2e-06 57.4 95 41.1
Actinidia03180 Actinidia chinensis HOM05D004095 ORTHO05D003197 2.8e-06 57.0 107 37.4
Potri.009G134800 Populus trichocarpa HOM05D015147 ORTHO05D003197 2.8e-06 57.0 326 30.1
Thhalv10022767m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 4.8e-06 56.2 360 26.4
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 6.3e-06 55.8 321 24.3


User provided reference genes

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