Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold11G05922 Striga asiatica HOM05D006392 ORTHO05D008010 1.4e-231 805.8 391 100.0
MSTRG.1188 Avicennia marina HOM05D006392 ORTHO05D008010 1.0e-165 587.0 371 75.5
Migut.C00843 Erythranthe guttata HOM05D006392 ORTHO05D008010 2.8e-158 562.4 370 73.2
SalBow7G2189 Salvia bowleyana HOM05D006392 ORTHO05D008010 2.6e-156 555.8 430 65.8
Oeu014179.1 Olea europaea HOM05D006392 ORTHO05D008010 1.5e-143 513.5 371 67.1
CAN.G311.35 Capsicum annuum HOM05D006392 ORTHO05D008010 3.3e-143 512.3 372 66.1
Rhsim06G0021200 Rhododendron simsii HOM05D006392 ORTHO05D008010 1.6e-142 510.0 372 66.4
Solyc04g081500.3 Solanum lycopersicum HOM05D006392 ORTHO05D008010 8.1e-142 507.7 372 65.3
Sopen04g035110 Solanum pennellii HOM05D006392 ORTHO05D008010 1.4e-141 506.9 372 65.3
Hma1.2p1_0638F.1_g193900 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 1.8e-141 506.5 372 65.1
PGSC0003DMG400009939 Solanum tuberosum HOM05D006392 ORTHO05D008010 5.2e-141 505.0 372 65.9
CSS0006206 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 2.9e-139 499.2 372 64.0
CSS0012189 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 2.9e-139 499.2 372 64.0
Lj4C23T1 Lonicera japonica HOM05D006392 ORTHO05D008010 8.4e-139 497.7 391 61.9
Actinidia21265 Actinidia chinensis HOM05D006392 ORTHO05D008010 2.7e-137 492.7 372 65.1
DCAR_023015 Daucus carota HOM05D006392 ORTHO05D008010 2.1e-134 483.0 372 61.3
ECA233G3412 Erigeron canadensis HOM05D006392 ORTHO05D008010 8.1e-134 481.1 371 61.7
GSVIVG01009916001 Vitis vinifera HOM05D006392 ORTHO05D008010 4.4e-132 475.3 372 61.8
HanXRQChr13g0387101 Helianthus annuus HOM05D006392 ORTHO05D008010 9.9e-132 474.2 373 61.9
TAR628G0005 Trochodendron aralioides HOM05D006392 ORTHO05D008010 7.1e-130 468.0 373 61.7
Lsat_1_v5_gn_8_30701 Lactuca sativa HOM05D006392 ORTHO05D008010 3.0e-128 462.6 373 61.1
PSO675G2043 Papaver somniferum HOM05D006392 ORTHO05D008010 6.6e-128 461.5 368 62.0
PSO541G2958 Papaver somniferum HOM05D006392 ORTHO05D008010 2.5e-127 459.5 368 61.7
CsaV3_3G045910 Cucumis sativus L. HOM05D006392 ORTHO05D008010 1.6e-126 456.8 379 57.3
TWI56G0581 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 4.8e-126 455.3 379 58.3
Gohir.A01G111000 Gossypium hirsutum HOM05D006392 ORTHO05D008010 5.3e-125 451.8 378 59.3
Duzib093G0848 Durio zibethinus HOM05D006392 ORTHO05D008010 2.0e-124 449.9 380 58.2
QL02p011683 Quercus lobata HOM05D006392 ORTHO05D008010 2.0e-124 449.9 379 56.7
Gorai.002G123300 Gossypium raimondii HOM05D006392 ORTHO05D008010 4.4e-124 448.7 378 59.0
ATR0810G120 Amborella trichopoda HOM05D006392 ORTHO05D008010 7.6e-124 448.0 376 59.0
Gohir.D01G097700 Gossypium hirsutum HOM05D006392 ORTHO05D008010 9.9e-124 447.6 378 59.0
CiPaw.07G149200 Carya illinoinensis HOM05D006392 ORTHO05D008010 1.3e-123 447.2 373 59.2
Sed0018359 Sechium edule HOM05D006392 ORTHO05D008010 1.3e-123 447.2 377 57.6
Eucgr.F01664 Eucalyptus grandis HOM05D006392 ORTHO05D008010 1.7e-123 446.8 379 57.5
Nitab4.5_0013390g0010 Nicotiana tabacum HOM05D006392 ORTHO05D008010 2.9e-123 446.0 350 62.9
Potri.002G021700 Populus trichocarpa HOM05D006392 ORTHO05D008010 4.9e-123 445.3 378 56.9
Thecc.08G045200 Theobroma cacao HOM05D006392 ORTHO05D008010 4.9e-123 445.3 380 56.6
Ciclev10001496m.g Citrus clementina HOM05D006392 ORTHO05D008010 3.2e-122 442.6 377 57.3
Haze_22639 Corylus avellana HOM05D006392 ORTHO05D008010 7.1e-122 441.4 421 53.9
Aqoxy6G00284_Aqoxy6G00285 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 1.2e-121 440.7 371 58.0
Sabra05G0185500 Salix brachista HOM05D006392 ORTHO05D008010 3.5e-121 439.1 378 56.1
Potri.005G240000 Populus trichocarpa HOM05D006392 ORTHO05D008010 1.0e-120 437.6 378 55.6
Cpa.g.sc26.51 Carica papaya HOM05D006392 ORTHO05D008010 1.7e-120 436.8 380 56.8
PGR083G2660 Punica granatum HOM05D006392 ORTHO05D008010 1.9e-119 433.3 375 56.3
AUR62033899 Chenopodium quinoa HOM05D006392 ORTHO05D008010 4.3e-119 432.2 375 55.5
Prupe.1G364700 Prunus persica HOM05D006392 ORTHO05D008010 7.4e-119 431.4 375 56.8
CANSAT25G2040 Cannabis sativa HOM05D006392 ORTHO05D008010 1.6e-118 430.3 379 55.4
Sabra02G0018100 Salix brachista HOM05D006392 ORTHO05D008010 1.2e-116 424.1 410 50.5
Lj6g0002207 Lotus japonicus HOM05D006392 ORTHO05D008010 7.6e-116 421.4 370 57.0
Peaxi162Scf00438g00835 Petunia axillaris HOM05D006392 ORTHO05D008010 7.6e-116 421.4 375 57.6
Lalb_Chr20g0119891 Lupinus albus HOM05D006392 ORTHO05D008010 2.2e-115 419.9 369 57.2
FvH4_2g38390 Fragaria vesca HOM05D006392 ORTHO05D008010 4.9e-115 418.7 374 54.8
Glyma.09G103100 Glycine max HOM05D006392 ORTHO05D008010 4.9e-115 418.7 368 56.2
CDE04G0374 Ceratophyllum demersum HOM05D006392 ORTHO05D008010 6.4e-115 418.3 347 58.2
Manes.05G146900 Manihot esculenta HOM05D006392 ORTHO05D008010 8.4e-115 417.9 378 54.5
Actinidia35835 Actinidia chinensis HOM05D006392 ORTHO05D008010 1.1e-114 417.5 340 61.8
EL10Ac1g02188 Beta vulgaris HOM05D006392 ORTHO05D008010 5.5e-114 415.2 354 55.4
MD15G1011700 Malus domestica HOM05D006392 ORTHO05D008010 9.3e-114 414.5 375 54.7
RcHm_v2.0_Chr6g0302911 Rosa chinensis HOM05D006392 ORTHO05D008010 1.6e-113 413.7 372 54.3
Cfa013957 Carpinus fangiana HOM05D006392 ORTHO05D008010 3.5e-113 412.5 375 56.8
TWI36G0533 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 1.0e-112 411.0 359 55.7
MD08G1012700 Malus domestica HOM05D006392 ORTHO05D008010 1.8e-112 410.2 375 54.7
Phvul.005G022200 Phaseolus vulgaris HOM05D006392 ORTHO05D008010 3.0e-112 409.5 367 56.4
Os06g0715600 Oryza sativa ssp. japonica HOM05D006392 ORTHO05D008010 1.5e-111 407.1 362 53.0
THA.LOC104809190 Tarenaya hassleriana HOM05D006392 ORTHO05D008010 1.5e-111 407.1 379 53.6
AL8G18870 Arabidopsis lyrata HOM05D006392 ORTHO05D008010 2.5e-111 406.4 375 52.3
arahy.Tifrunner.gnm1.ann1.8AJY4P Arachis hypogaea HOM05D006392 ORTHO05D008010 2.5e-111 406.4 355 56.9
arahy.Tifrunner.gnm1.ann1.GAE5DS Arachis hypogaea HOM05D006392 ORTHO05D008010 7.4e-111 404.8 355 56.6
Medtr2g029040 Medicago truncatula HOM05D006392 ORTHO05D008010 1.3e-110 404.1 373 53.1
Ca_00791_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 2.8e-110 402.9 369 54.5
VMungo1080G0965 Vigna mungo HOM05D006392 ORTHO05D008010 6.9e-109 398.3 345 57.7
Zm00001eb228060 Zea mays HOM05D006392 ORTHO05D008010 1.5e-108 397.1 386 50.5
Nn1g05904 Nelumbo nucifera HOM05D006392 ORTHO05D008010 2.0e-108 396.7 373 55.2
Ca_07152_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 4.5e-108 395.6 387 51.7
Sp7g07860 Schrenkiella parvula HOM05D006392 ORTHO05D008010 3.8e-107 392.5 376 50.8
A06p48320 Brassica napus HOM05D006392 ORTHO05D008010 1.1e-106 391.0 373 52.0
BcaC06g31757 Brassica carinata HOM05D006392 ORTHO05D008010 1.9e-106 390.2 373 51.7
BraA06t27702Z Brassica rapa HOM05D006392 ORTHO05D008010 2.5e-106 389.8 373 52.0
Hma1.2p1_0638F.1_g193910 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 2.5e-106 389.8 395 52.2
AT5G42470 Arabidopsis thaliana HOM05D006392 ORTHO05D008010 4.2e-106 389.0 377 50.7
Thhalv10003229m.g Eutrema salsugineum HOM05D006392 ORTHO05D008010 5.5e-106 388.7 376 50.8
Carub.0008s0658 Capsella rubella HOM05D006392 ORTHO05D008010 1.2e-105 387.5 379 50.1
Duzib116G0836 Durio zibethinus HOM05D006392 ORTHO05D008010 1.6e-105 387.1 354 56.5
Dinv31849 Davidia involucrata HOM05D006392 ORTHO05D008010 3.0e-104 382.9 308 61.7
SEGI_16132 Sequoiadendron giganteum HOM05D006392 ORTHO05D008010 3.9e-104 382.5 373 50.7
C04p25370 Brassica napus HOM05D006392 ORTHO05D008010 6.7e-104 381.7 374 50.8
BolC4t24044H Brassica oleracea HOM05D006392 ORTHO05D008010 6.7e-104 381.7 374 50.8
BcaC02g10765 Brassica carinata HOM05D006392 ORTHO05D008010 8.7e-104 381.3 373 50.9
AUR62041903 Chenopodium quinoa HOM05D006392 ORTHO05D008010 1.9e-103 380.2 349 53.3
MBI05_g07507_MAGBIO Magnolia biondii HOM05D006392 ORTHO05D008010 6.3e-102 375.2 347 55.6
HPP92_024091 Vanilla planifolia HOM05D006392 ORTHO05D008010 8.2e-102 374.8 356 52.2
FAN15G0959 Fragaria x ananassa HOM05D006392 ORTHO05D008010 1.1e-101 374.4 396 49.2
FAN20G2474 Fragaria x ananassa HOM05D006392 ORTHO05D008010 3.1e-101 372.9 372 50.3
Hund05186 Selenicereus undatus HOM05D006392 ORTHO05D008010 6.9e-101 371.7 351 53.3
unitig_32.g11136 Utricularia gibba HOM05D006392 ORTHO05D008010 2.2e-99 366.7 302 61.9
Aa31LG9G12590 Aethionema arabicum HOM05D006392 ORTHO05D008010 1.1e-98 364.4 349 51.0
Sc02g0008600 Simmondsia chinensis HOM05D006392 ORTHO05D008010 4.2e-98 362.5 326 55.2
FAN27G1073 Fragaria x ananassa HOM05D006392 ORTHO05D008010 1.2e-97 360.9 372 49.2
Psat1g169520 Pisum sativum HOM05D006392 ORTHO05D008010 1.1e-90 337.8 321 53.3
vmacro07583 Vaccinium macrocarpon HOM05D006392 ORTHO05D008010 5.5e-90 335.5 304 57.6
Eucgr.F02661 Eucalyptus grandis HOM05D006392 ORTHO05D008010 1.2e-89 334.3 305 54.8
Actinidia16990 Actinidia chinensis HOM05D006392 ORTHO05D004187 5.9e-84 315.5 287 58.2
MD11G1014100 Malus domestica HOM05D006392 ORTHO05D008010 1.4e-82 310.8 273 55.7
TPR.G17497 Trifolium pratense HOM05D006392 ORTHO05D008010 1.0e-80 304.7 228 61.8
Glyma.15G275100 Glycine max HOM05D006392 ORTHO05D008010 2.0e-79 300.4 221 63.3
MELO3C030484.2 Cucumis melo HOM05D006392 ORTHO05D008010 2.2e-78 297.0 375 46.1
Mapoly0064s0103 Marchantia polymorpha HOM05D006392 ORTHO05D008010 4.8e-78 295.8 380 40.3
AagrBONN_evm.TU.Sc2ySwM_117.3435 Anthoceros agrestis HOM05D006392 ORTHO05D008010 1.8e-77 293.9 361 42.4
COL.COLO4_26140 Corchorus olitorius HOM05D006392 ORTHO05D008010 1.8e-77 293.9 287 51.2
Pp3c4_9730 Physcomitrium patens HOM05D006392 ORTHO05D008010 2.6e-76 290.0 380 39.7
SMO196G0156 Selaginella moellendorffii HOM05D006392 ORTHO05D008010 1.2e-73 281.2 367 42.5
CARHR181930 Cardamine hirsuta HOM05D006392 ORTHO05D008010 1.4e-72 277.7 213 59.6
Atru.chr13.285 Acer truncatum HOM05D006392 ORTHO05D008010 2.0e-68 263.8 339 41.0
Cc10_g01630 Coffea canephora HOM05D006392 ORTHO05D008010 3.5e-68 263.1 179 67.0
Cc10_g01620 Coffea canephora HOM05D006392 ORTHO05D008010 5.9e-60 235.7 189 60.3
CBR_g23034 Chara braunii HOM05D006392 ORTHO05D008010 3.2e-58 229.9 391 33.2
Aqoxy4G01015 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 3.1e-40 170.2 123 61.8
Ah.11g039750 Amaranthus hybridus HOM05D006392 ORTHO05D008010 3.3e-34 150.2 115 60.0
RcHm_v2.0_Chr4g0398161 Rosa chinensis HOM05D006392 ORTHO05D008010 4.3e-26 123.2 95 62.1
TPR.G29580 Trifolium pratense HOM05D006392 ORTHO05D008010 5.6e-26 122.9 111 54.1
RcHm_v2.0_Chr4g0398171 Rosa chinensis HOM05D006392 ORTHO05D008010 3.0e-19 100.5 107 46.7
Actinidia27159 Actinidia chinensis HOM05D006392 ORTHO05D008010 4.4e-15 86.7 172 39.0
Cre09.g401367 Chlamydomonas reinhardtii HOM05D006392 ORTHO05D008010 3.2e-13 80.5 142 33.1
ClCG05G018230 Citrullus lanatus HOM05D006392 ORTHO05D008010 1.2e-12 78.6 44 70.5


User provided reference genes

Program Settings