Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 1.6e-157 559.7 343 100.0
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 3.4e-75 286.2 356 50.6
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 1.2e-67 261.2 337 53.4
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 1.7e-66 257.3 345 51.3
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 2.2e-66 256.9 368 44.0
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 1.3e-55 221.1 282 45.4
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 2.1e-53 213.8 372 42.5
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 7.1e-41 172.2 348 37.1
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 3.0e-39 166.8 373 35.1
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 5.2e-36 156.0 387 35.1
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 2.2e-34 150.6 390 31.8
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 9.2e-33 145.2 356 33.1
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 9.2e-33 145.2 394 32.2
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 5.6e-30 136.0 292 38.0
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 2.8e-29 133.7 375 34.7
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 4.0e-28 129.8 370 34.1
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 1.5e-27 127.9 367 33.0
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 2.6e-27 127.1 363 30.6
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 4.4e-27 126.3 373 30.3
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 6.4e-26 122.5 396 30.1
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 8.4e-26 122.1 369 30.6
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.4e-25 121.3 371 30.2
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 1.2e-24 118.2 376 29.0
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 4.6e-24 116.3 211 43.6
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 6.0e-24 115.9 373 31.1
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.3e-23 114.8 381 30.7
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 1.7e-23 114.4 121 45.5
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 2.3e-23 114.0 359 32.0
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 2.3e-23 114.0 385 29.4
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 3.0e-23 113.6 376 30.1
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 3.9e-23 113.2 385 31.7
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 5.1e-23 112.8 365 29.3
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.9e-22 110.9 375 29.3
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 3.3e-22 110.2 377 30.2
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 4.3e-22 109.8 401 29.2
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 7.3e-22 109.0 362 30.9
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 1.6e-21 107.8 387 27.9
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 2.1e-21 107.5 389 29.3
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 2.8e-21 107.1 374 29.1
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 3.6e-21 106.7 314 30.6
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 4.8e-21 106.3 364 29.4
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 6.2e-21 105.9 301 29.2
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 8.1e-21 105.5 367 28.3
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 1.1e-20 105.1 375 27.7
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 1.1e-20 105.1 384 28.6
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.4e-20 104.8 378 28.6
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 2.4e-20 104.0 375 28.5
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 3.1e-20 103.6 389 26.5
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 6.9e-20 102.4 377 28.1
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 6.9e-20 102.4 388 28.4
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 6.9e-20 102.4 356 33.4
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 9.0e-20 102.1 388 28.9
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.2e-19 101.7 389 26.7
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 2.0e-19 100.9 370 29.7
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 2.6e-19 100.5 356 36.0
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 3.4e-19 100.1 384 28.4
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 5.8e-19 99.4 378 28.0
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 5.8e-19 99.4 366 30.6
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 9.9e-19 98.6 381 24.7
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 1.3e-18 98.2 183 35.5
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 1.3e-18 98.2 381 25.7
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 1.3e-18 98.2 372 30.1
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 1.3e-18 98.2 213 33.8
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.7e-18 97.8 372 28.8
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 6.4e-18 95.9 376 29.0
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 6.4e-18 95.9 375 30.9
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.1e-17 95.1 326 30.1
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 1.9e-17 94.4 398 27.6
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 2.4e-17 94.0 381 25.5
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 1.2e-16 91.7 373 27.6
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 2.1e-16 90.9 366 26.8
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 2.7e-16 90.5 385 30.6
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 3.5e-16 90.1 327 27.2
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 6.0e-16 89.4 294 28.6
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 6.0e-16 89.4 376 30.9
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 3.0e-15 87.0 161 37.9
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 3.0e-15 87.0 373 26.5
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 3.9e-15 86.7 302 27.5
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 6.6e-15 85.9 392 31.1
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 1.1e-14 85.1 369 27.1
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 1.1e-14 85.1 367 26.7
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 1.1e-14 85.1 394 31.5
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.9e-14 84.3 369 26.6
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 2.5e-14 84.0 402 26.4
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 3.3e-14 83.6 198 32.8
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 3.3e-14 83.6 367 27.2
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 7.3e-14 82.4 366 26.0
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 9.6e-14 82.0 211 31.8
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.3e-13 81.6 207 29.0
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 1.6e-13 81.3 362 24.9
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.6e-13 81.3 340 24.7
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 2.1e-13 80.9 371 26.4
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 3.6e-13 80.1 372 26.1
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 6.2e-13 79.3 211 29.4
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 8.1e-13 79.0 384 30.7
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.4e-12 78.2 289 27.7
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.4e-12 78.2 388 25.5
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.8e-12 77.8 369 26.3
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 2.4e-12 77.4 203 30.5
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 2.4e-12 77.4 402 27.9
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 4.0e-12 76.6 319 26.0
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 2.0e-11 74.3 400 25.5
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 2.0e-11 74.3 399 37.6
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 3.4e-11 73.6 395 26.1
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 3.4e-11 73.6 384 27.1
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 5.8e-11 72.8 198 31.8
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 5.8e-11 72.8 411 27.5
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 9.9e-11 72.0 198 30.8
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 1.3e-10 71.6 198 30.8
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.7e-10 71.2 506 23.3
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 3.8e-10 70.1 377 25.7
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 3.8e-10 70.1 208 27.9
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 4.9e-10 69.7 391 25.3
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 8.4e-10 68.9 196 31.1
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 1.1e-09 68.6 215 27.9
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 1.4e-09 68.2 377 25.7
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 7.1e-09 65.9 385 25.5
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 6.0e-08 62.8 368 33.4
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 6.0e-08 62.8 124 32.3
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 1.0e-07 62.0 188 25.5
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 1.8e-07 61.2 321 25.5
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 2.3e-07 60.8 186 26.3
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 3.0e-07 60.5 194 27.3
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 3.0e-07 60.5 210 30.5
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 5.1e-07 59.7 161 29.8
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 3.3e-06 57.0 204 27.9
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 7.4e-06 55.8 204 27.0


User provided reference genes

Program Settings