Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 8.3e-252 873.2 445 100.0
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 2.7e-194 682.2 445 76.9
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 3.6e-194 681.8 454 77.5
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 4.1e-174 615.1 448 71.2
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 4.0e-169 598.6 448 69.2
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 3.7e-167 592.0 453 67.5
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 1.4e-166 590.1 451 66.5
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 1.8e-166 589.7 447 68.2
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 4.5e-165 585.1 452 66.4
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 1.0e-164 583.9 447 67.8
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 3.8e-164 582.0 443 66.6
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 2.5e-163 579.3 446 65.0
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 9.4e-163 577.4 437 68.6
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 1.2e-162 577.0 445 67.4
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 3.6e-162 575.5 456 65.6
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 4.7e-162 575.1 445 65.6
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 6.1e-162 574.7 445 64.7
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 1.0e-161 573.9 444 68.0
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.4e-161 573.5 445 64.5
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 5.2e-161 571.6 442 66.7
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 1.2e-160 570.5 446 67.3
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 4.4e-160 568.5 449 66.1
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 4.8e-159 565.1 458 64.6
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 4.1e-158 562.0 453 64.2
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 4.1e-158 562.0 446 64.6
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 9.1e-158 560.8 438 64.8
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 1.2e-157 560.5 450 64.9
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 2.0e-157 559.7 446 65.2
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 2.7e-157 559.3 464 63.6
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 2.7e-157 559.3 446 65.9
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 2.7e-157 559.3 518 57.9
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 1.0e-156 557.4 488 61.1
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 1.7e-156 556.6 434 67.3
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 2.9e-156 555.8 472 63.3
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 5.0e-156 555.1 449 64.6
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 8.6e-156 554.3 439 65.6
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 5.5e-155 551.6 443 64.1
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 7.2e-155 551.2 481 60.9
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 1.2e-154 550.4 453 64.0
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.6e-154 550.1 438 63.5
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 2.8e-154 549.3 416 67.8
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 4.0e-153 545.4 445 64.3
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 1.2e-152 543.9 445 63.8
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 1.2e-152 543.9 447 65.3
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 1.2e-152 543.9 435 64.1
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 3.4e-152 542.3 456 62.7
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 3.4e-152 542.3 446 63.5
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 5.7e-152 541.6 452 63.5
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 2.2e-151 539.7 436 63.8
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 1.1e-150 537.3 448 64.5
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 1.4e-150 537.0 431 64.0
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.4e-150 536.2 445 62.9
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 5.4e-150 535.0 437 62.7
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 7.0e-150 534.6 439 62.6
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 9.2e-150 534.3 444 61.7
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 1.6e-149 533.5 443 61.6
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 2.7e-149 532.7 489 58.1
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 5.9e-149 531.6 436 62.2
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 7.8e-149 531.2 440 62.0
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 1.7e-148 530.0 432 63.0
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 2.3e-148 529.6 439 65.8
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 2.9e-148 529.3 418 66.3
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 2.9e-148 529.3 447 62.6
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 5.0e-148 528.5 444 62.4
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 3.3e-147 525.8 466 61.4
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 3.3e-147 525.8 437 62.7
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 3.3e-147 525.8 456 62.3
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 7.3e-147 524.6 452 61.1
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 9.5e-147 524.2 437 60.0
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 1.2e-146 523.9 452 61.5
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 1.2e-146 523.9 436 60.8
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 3.6e-146 522.3 437 60.0
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 1.5e-144 516.9 453 61.4
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 2.6e-144 516.2 431 62.4
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 3.4e-144 515.8 455 61.1
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 5.8e-144 515.0 441 61.5
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 5.8e-144 515.0 438 60.7
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 5.8e-144 515.0 461 61.0
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 7.5e-144 514.6 443 61.2
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 3.7e-143 512.3 440 59.8
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 6.4e-143 511.5 439 59.9
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 6.4e-143 511.5 439 59.9
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 3.5e-141 505.8 432 60.4
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 4.6e-141 505.4 445 60.4
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 4.6e-141 505.4 465 57.8
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 7.8e-141 504.6 432 61.1
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 5.0e-140 501.9 432 60.4
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 5.0e-140 501.9 470 57.0
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 5.0e-140 501.9 500 53.0
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 9.5e-139 497.7 438 58.7
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 2.1e-138 496.5 425 59.3
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 3.6e-138 495.7 419 61.6
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 4.7e-138 495.4 445 59.3
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 1.2e-136 490.7 469 55.4
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 2.6e-136 489.6 438 61.0
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 1.3e-132 477.2 419 62.1
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 2.5e-131 473.0 478 54.4
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 9.5e-131 471.1 435 57.5
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.2e-130 470.7 433 57.5
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.1e-130 469.9 431 58.0
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 9.2e-126 454.5 381 61.9
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 1.6e-125 453.8 478 52.3
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 2.1e-125 453.4 471 52.7
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 2.5e-123 446.4 461 53.1
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 1.9e-115 420.2 380 60.3
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 2.5e-115 419.9 375 59.7
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 3.0e-108 396.4 458 48.9
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 2.1e-106 390.2 438 50.5
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 1.6e-101 374.0 523 43.8
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 1.9e-99 367.1 279 66.7
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.1e-97 361.3 293 65.2
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 9.0e-97 358.2 498 42.0
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 8.4e-95 351.7 469 44.3
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 1.4e-94 350.9 348 55.2
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.1e-91 341.3 282 63.8
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 3.3e-91 339.7 363 54.0
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 2.3e-84 317.0 522 39.8
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 2.1e-77 293.9 621 33.2
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 2.0e-59 234.2 450 34.0
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 1.6e-53 214.5 452 33.8
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 4.0e-52 209.9 501 31.9
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 3.0e-44 183.7 160 60.6
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 1.4e-41 174.9 233 48.9
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 2.7e-40 170.6 240 45.8
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 8.6e-31 139.0 106 64.2
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 9.5e-30 135.6 189 47.6
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.6e-29 134.8 117 56.4
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 3.6e-29 133.7 189 47.1
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 3.5e-24 117.1 183 40.4
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 5.0e-23 113.2 87 69.0
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 1.2e-16 92.0 216 33.3
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 5.1e-15 86.7 71 53.5
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 3.6e-13 80.5 132 43.9
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 3.6e-13 80.5 68 57.4
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 3.6e-13 80.5 63 60.3
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 6.8e-12 76.3 41 80.5
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 2.0e-11 74.7 109 44.0
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 1.3e-10 72.0 93 44.1
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 2.2e-10 71.2 111 44.1
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 9.2e-09 65.9 92 45.7
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 2.1e-08 64.7 92 45.7
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 6.6e-07 59.7 34 76.5
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 5.6e-06 56.6 147 31.3
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 7.3e-06 56.2 66 51.5


User provided reference genes

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