Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 1.7e-182 642.5 325 100.0
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 1.6e-148 529.6 321 83.5
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 2.8e-140 502.3 323 80.8
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.2e-130 470.3 320 74.4
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 3.8e-129 465.3 320 72.8
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 6.5e-129 464.5 320 74.1
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 6.5e-129 464.5 318 73.9
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 8.5e-129 464.2 322 72.4
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 4.2e-128 461.8 320 72.5
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 7.2e-128 461.1 318 73.6
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 9.4e-128 460.7 318 73.3
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 2.1e-127 459.5 320 73.8
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 2.7e-127 459.1 308 73.1
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 3.6e-127 458.8 320 71.2
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 8.0e-127 457.6 322 71.7
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 1.8e-126 456.4 306 74.2
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 5.2e-126 454.9 344 68.6
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 1.7e-124 449.9 304 73.7
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 3.7e-124 448.7 322 71.1
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 3.7e-124 448.7 324 71.6
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 3.7e-124 448.7 307 72.0
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 6.3e-124 448.0 322 71.7
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 1.4e-123 446.8 327 68.8
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.4e-123 446.0 320 71.2
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 7.0e-123 444.5 329 69.9
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 2.7e-122 442.6 306 72.9
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 2.7e-122 442.6 306 72.9
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 2.7e-122 442.6 321 70.4
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 7.7e-122 441.0 326 69.6
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 1.3e-121 440.3 321 69.5
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 2.2e-121 439.5 322 69.6
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 2.2e-121 439.5 316 69.9
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 2.2e-121 439.5 322 68.9
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 5.0e-121 438.3 307 71.7
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.1e-120 437.2 320 69.4
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 1.1e-120 437.2 308 73.4
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 2.5e-120 436.0 320 68.1
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 3.2e-120 435.6 320 68.1
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 3.2e-120 435.6 320 70.6
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 5.5e-120 434.9 322 68.6
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 5.5e-120 434.9 348 66.4
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 1.2e-119 433.7 305 69.8
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 1.6e-119 433.3 320 68.4
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 2.1e-119 433.0 325 66.8
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.1e-119 433.0 388 61.6
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 2.7e-119 432.6 335 67.8
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 3.6e-119 432.2 321 68.5
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 4.7e-119 431.8 309 70.2
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 1.8e-118 429.9 313 70.0
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 4.0e-118 428.7 306 70.3
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 8.8e-118 427.6 322 67.7
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 8.8e-118 427.6 320 68.8
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.2e-117 427.2 322 67.4
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 2.8e-116 422.5 320 68.1
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 4.8e-116 421.8 325 66.5
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 8.3e-116 421.0 305 70.2
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.4e-115 420.2 329 69.9
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 4.1e-115 418.7 270 76.7
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.6e-114 416.8 350 62.3
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 2.0e-114 416.4 320 65.9
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 2.7e-114 416.0 327 64.5
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 4.5e-114 415.2 323 65.6
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 4.5e-114 415.2 320 65.9
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 7.7e-114 414.5 321 64.8
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 1.3e-113 413.7 318 65.4
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 2.9e-113 412.5 323 64.7
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 2.9e-113 412.5 307 67.1
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.9e-113 412.5 350 64.0
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 5.0e-113 411.8 321 66.4
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 5.0e-113 411.8 320 65.3
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 8.5e-113 411.0 320 64.7
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.1e-112 410.6 320 66.9
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 1.5e-112 410.2 320 65.3
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 4.2e-112 408.7 311 65.3
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 7.2e-112 407.9 320 64.4
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 1.6e-111 406.8 348 62.1
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 1.6e-111 406.8 304 67.4
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 2.7e-111 406.0 320 64.7
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 3.6e-111 405.6 304 65.8
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 3.6e-111 405.6 273 73.6
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 6.1e-111 404.8 308 66.9
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 6.1e-111 404.8 320 64.1
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 8.0e-111 404.4 304 66.4
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 3.0e-110 402.5 304 66.1
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 3.0e-110 402.5 271 74.2
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.2e-109 400.6 343 62.1
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 1.5e-109 400.2 304 65.5
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 2.6e-109 399.4 289 68.9
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 5.7e-109 398.3 304 65.8
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 7.5e-109 397.9 320 65.6
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 1.7e-108 396.7 304 65.5
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 1.7e-108 396.7 320 63.8
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 3.7e-108 395.6 311 65.0
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 1.8e-107 393.3 321 64.5
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 2.4e-107 392.9 304 65.1
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.4e-107 392.9 321 64.8
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 5.9e-106 388.3 330 60.9
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 7.7e-106 387.9 304 64.5
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 1.0e-105 387.5 274 71.5
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 1.3e-105 387.1 314 65.3
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 2.9e-105 386.0 304 64.1
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 1.5e-104 383.6 304 63.8
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.5e-104 383.6 323 65.0
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.9e-104 383.3 304 63.5
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 1.2e-103 380.6 365 57.0
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 2.3e-102 376.3 275 68.4
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 4.0e-102 375.6 270 69.6
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 1.1e-99 367.5 279 67.7
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 9.2e-99 364.4 325 59.4
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 1.2e-98 364.0 304 58.2
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 5.9e-98 361.7 308 60.4
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 5.9e-98 361.7 265 70.6
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 7.8e-98 361.3 304 60.9
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 2.3e-97 359.8 309 60.5
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 3.0e-97 359.4 326 59.5
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 3.9e-97 359.0 303 62.0
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 2.1e-95 353.2 306 57.2
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 2.8e-95 352.8 247 70.9
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 3.6e-95 352.4 247 69.2
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 4.7e-95 352.1 311 64.0
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 5.8e-93 345.1 321 57.6
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 3.7e-92 342.4 320 58.1
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 2.3e-89 333.2 306 58.8
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.2e-83 312.8 322 54.0
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 7.8e-82 308.1 227 69.2
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 1.2e-77 294.3 228 64.9
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.7e-73 280.4 459 41.2
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 2.5e-72 276.6 307 48.2
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 7.3e-72 275.0 203 66.0
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 4.9e-68 262.3 186 72.0
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 5.6e-64 248.8 168 76.2
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 7.3e-64 248.4 356 41.9
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 9.6e-64 248.1 178 68.5
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 8.1e-63 245.0 160 73.8
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 2.6e-61 240.0 270 49.3
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.2e-60 236.9 248 54.8
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.9e-59 233.8 182 65.4
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 3.2e-59 233.0 221 55.7
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.7e-58 229.9 210 59.5
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 3.5e-58 229.6 211 59.7
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 1.8e-57 227.3 196 59.7
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 3.9e-57 226.1 184 64.7
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 3.3e-56 223.0 269 46.1
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 1.6e-55 220.7 135 81.5
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 3.4e-53 213.0 289 43.9
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 1.7e-52 210.7 145 71.0
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 1.9e-51 207.2 139 74.1
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 4.2e-51 206.1 168 63.7
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.6e-50 204.1 218 50.0
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 6.9e-46 188.7 148 66.9
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 4.9e-44 182.6 194 52.6
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 1.9e-43 180.6 135 65.2
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 6.0e-42 175.6 288 42.7
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 3.0e-41 173.3 121 68.6
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 1.1e-40 171.4 116 70.7
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.5e-40 171.0 151 59.6
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 6.1e-34 149.1 171 42.1
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.3e-32 143.3 182 46.7
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 1.6e-31 141.0 106 70.8
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 1.7e-28 131.0 116 59.5
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 9.4e-27 125.2 113 56.6
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 3.6e-26 123.2 124 51.6
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 4.4e-24 116.3 142 48.6
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.2e-19 100.1 61 73.8
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 9.4e-19 98.6 79 63.3
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 9.7e-16 88.6 79 59.5
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 2.4e-14 84.0 88 51.1
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.2e-12 77.4 91 46.2
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 2.2e-12 77.4 61 62.3
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.9e-11 74.3 42 83.3
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 2.5e-11 73.9 85 47.1
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 2.5e-11 73.9 61 62.3
Gohir.D02G117850 Gossypium hirsutum HOM05D034602 ORTHO05D048040 1.4e-06 58.2 38 71.1
SalBow6G4341 Salvia bowleyana HOM05D000670 ORTHO05D000529 4.1e-06 56.6 177 31.6
Gorai.007G225200 Gossypium raimondii HOM05D034602 ORTHO05D048040 9.1e-06 55.5 36 69.4


User provided reference genes

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