Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold11G05883 Striga asiatica HOM05D000237 ORTHO05D016966 2.9e-105 385.2 190 100.0
SGA_v2.0_scaffold9G05028 Striga asiatica HOM05D000237 ORTHO05D016966 2.8e-23 112.8 84 72.6
SGA_v2.0_scaffold58G20369 Striga asiatica HOM05D000237 ORTHO05D001145 8.2e-23 111.3 78 74.4
Migut.B00083 Erythranthe guttata HOM05D000237 ORTHO05D001145 6.5e-20 101.7 78 67.9
MSTRG.16902 Avicennia marina HOM05D000237 ORTHO05D001145 1.2e-18 97.4 76 65.8
SalBow1G0021 Salvia bowleyana HOM05D000237 ORTHO05D001145 2.1e-18 96.7 75 65.3
MSTRG.19993 Avicennia marina HOM05D000237 ORTHO05D001145 1.8e-17 93.6 75 62.7
MSTRG.27639 Avicennia marina HOM05D000237 ORTHO05D001145 3.3e-16 89.4 75 56.0
SGA_v2.0_scaffold260G45850 Striga asiatica HOM05D011878 ORTHO05D016966 4.1e-14 82.4 44 88.6
HanXRQChr10g0300891 Helianthus annuus HOM05D000237 ORTHO05D001145 2.6e-13 79.7 65 60.0
Oeu026677.1 Olea europaea HOM05D000237 ORTHO05D001145 2.9e-12 76.3 74 52.7
Lsat_1_v5_gn_4_71680 Lactuca sativa HOM05D000237 ORTHO05D001145 8.5e-12 74.7 65 55.4
Oeu006683.1 Olea europaea HOM05D000237 ORTHO05D001145 1.1e-11 74.3 75 49.3
Oeu006684.1 Olea europaea HOM05D000237 ORTHO05D001145 1.1e-11 74.3 75 49.3
ECA234G3036 Erigeron canadensis HOM05D000237 ORTHO05D001145 1.4e-11 73.9 65 55.4
Peaxi162Scf00362g00069 Petunia axillaris HOM05D000237 ORTHO05D001145 1.9e-11 73.6 65 52.3
Atru.chr5.3315 Acer truncatum HOM05D000237 ORTHO05D001145 2.5e-11 73.2 68 50.0
Ciclev10027936m.g Citrus clementina HOM05D000237 ORTHO05D001145 3.2e-11 72.8 68 52.9
CSS0005743 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 5.5e-11 72.0 66 51.5
Cfa005238 Carpinus fangiana HOM05D000237 ORTHO05D001145 5.5e-11 72.0 80 47.5
Haze_02144 Corylus avellana HOM05D000237 ORTHO05D001145 5.5e-11 72.0 80 47.5
Nitab4.5_0003914g0020 Nicotiana tabacum HOM05D000237 ORTHO05D001145 7.2e-11 71.6 65 50.8
CAN.G588.76 Capsicum annuum HOM05D000237 ORTHO05D001145 9.4e-11 71.2 65 53.8
Lj9A393G50 Lonicera japonica HOM05D000237 ORTHO05D016966 1.6e-10 70.5 64 54.7
Oeu005711.1 Olea europaea HOM05D000237 ORTHO05D001145 1.6e-10 70.5 64 53.1
Solyc01g111570.3 Solanum lycopersicum HOM05D000237 ORTHO05D001145 1.6e-10 70.5 65 52.3
Sopen01g053610 Solanum pennellii HOM05D000237 ORTHO05D001145 1.6e-10 70.5 65 52.3
Nitab4.5_0000283g0320 Nicotiana tabacum HOM05D000237 ORTHO05D001145 2.1e-10 70.1 65 50.8
TAR628G0790 Trochodendron aralioides HOM05D000237 ORTHO05D001145 2.1e-10 70.1 65 50.8
DCAR_003168 Daucus carota HOM05D000237 ORTHO05D001145 2.7e-10 69.7 65 53.8
Gohir.A01G168400 Gossypium hirsutum HOM05D000237 ORTHO05D001145 2.7e-10 69.7 68 52.9
Lj5A179G80 Lonicera japonica HOM05D000237 ORTHO05D001145 2.7e-10 69.7 64 51.6
QL11p050194 Quercus lobata HOM05D000237 ORTHO05D001145 2.7e-10 69.7 66 50.0
PGSC0003DMG402006188 Solanum tuberosum HOM05D000237 ORTHO05D001145 3.6e-10 69.3 65 52.3
CSS0029298 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 6.1e-10 68.6 65 50.8
Eucgr.I01415 Eucalyptus grandis HOM05D000237 ORTHO05D001145 6.1e-10 68.6 76 48.7
Hund06434 Selenicereus undatus HOM05D000237 ORTHO05D001145 7.9e-10 68.2 75 42.7
EL10Ac9g21383 Beta vulgaris HOM05D000237 ORTHO05D001145 1.0e-09 67.8 65 50.8
CANSAT25G0515 Cannabis sativa HOM05D000237 ORTHO05D001145 1.4e-09 67.4 66 53.0
CiPaw.05G081900 Carya illinoinensis HOM05D000237 ORTHO05D001145 1.4e-09 67.4 65 50.8
Duzib132G0397 Durio zibethinus HOM05D000237 ORTHO05D001145 1.4e-09 67.4 68 51.5
Manes.04G075980 Manihot esculenta HOM05D000237 ORTHO05D001145 1.4e-09 67.4 70 48.6
TPR.G39227 Trifolium pratense HOM05D000237 ORTHO05D001145 1.4e-09 67.4 76 42.1
Cpa.g.sc37.139 Carica papaya HOM05D000237 ORTHO05D001145 1.8e-09 67.0 68 51.5
COL.COLO4_17332 Corchorus olitorius HOM05D000237 ORTHO05D001145 1.8e-09 67.0 68 50.0
Duzib052G0867 Durio zibethinus HOM05D000237 ORTHO05D001145 1.8e-09 67.0 68 50.0
Gohir.D01G159400 Gossypium hirsutum HOM05D000237 ORTHO05D001145 1.8e-09 67.0 68 51.5
Gorai.002G197700 Gossypium raimondii HOM05D000237 ORTHO05D001145 1.8e-09 67.0 68 51.5
Thecc.02G060500 Theobroma cacao HOM05D000237 ORTHO05D001145 3.0e-09 66.2 68 50.0
TAR376G0531 Trochodendron aralioides HOM05D000237 ORTHO05D001145 3.0e-09 66.2 65 50.8
vmacro17350 Vaccinium macrocarpon HOM05D000237 ORTHO05D001145 3.0e-09 66.2 65 52.3
CiPaw.06G122200 Carya illinoinensis HOM05D000237 ORTHO05D001145 3.9e-09 65.9 65 50.8
TWI75G0161 Tripterygium wilfordii HOM05D000237 ORTHO05D001145 3.9e-09 65.9 68 48.5
Cc09_g10140 Coffea canephora HOM05D000237 ORTHO05D001145 5.1e-09 65.5 64 48.4
Lj3g0014103 Lotus japonicus HOM05D000237 ORTHO05D001145 5.1e-09 65.5 75 42.7
Potri.004G175100 Populus trichocarpa HOM05D000237 ORTHO05D001145 5.1e-09 65.5 80 41.2
Glyma.11G108000 Glycine max HOM05D000237 ORTHO05D001145 6.7e-09 65.1 75 42.7
MD05G1121300 Malus domestica HOM05D000237 ORTHO05D001145 6.7e-09 65.1 63 50.8
Rhsim05G0060200 Rhododendron simsii HOM05D000237 ORTHO05D001145 6.7e-09 65.1 65 52.3
arahy.Tifrunner.gnm1.ann1.RN7VB5 Arachis hypogaea HOM05D000237 ORTHO05D001145 8.8e-09 64.7 78 39.7
Manes.11G094000 Manihot esculenta HOM05D000237 ORTHO05D001145 8.8e-09 64.7 68 47.1
Prupe.8G165200 Prunus persica HOM05D000237 ORTHO05D001145 1.1e-08 64.3 63 49.2
Sc08g0002960 Simmondsia chinensis HOM05D000237 ORTHO05D001145 1.1e-08 64.3 73 47.9
Ca_19070_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 1.5e-08 63.9 75 42.7
Lj1g0028167 Lotus japonicus HOM05D000237 ORTHO05D001145 1.5e-08 63.9 75 44.0
Hma1.2p1_0163F.1_g072450 Hydrangea macrophylla HOM05D000237 ORTHO05D001145 2.0e-08 63.5 65 50.8
Medtr4g073140 Medicago truncatula HOM05D000237 ORTHO05D001145 2.0e-08 63.5 75 40.0
Sabra04G0116800 Salix brachista HOM05D000237 ORTHO05D001145 2.6e-08 63.2 68 44.1
Ah.01g008450 Amaranthus hybridus HOM05D000237 ORTHO05D001145 3.3e-08 62.8 65 44.6
Glyma.12G032900 Glycine max HOM05D000237 ORTHO05D001145 3.3e-08 62.8 75 41.3
Psat7g175880 Pisum sativum HOM05D000237 ORTHO05D001145 4.4e-08 62.4 75 41.3
PGR142G0871 Punica granatum HOM05D000237 ORTHO05D001145 4.4e-08 62.4 65 49.2
Sabra09G0104500 Salix brachista HOM05D000237 ORTHO05D001145 4.4e-08 62.4 68 44.1
VMungo1127G1359 Vigna mungo HOM05D000237 ORTHO05D001145 5.7e-08 62.0 63 46.0
Potri.009G134700 Populus trichocarpa HOM05D000237 ORTHO05D001145 7.4e-08 61.6 68 44.1
AUR62013035 Chenopodium quinoa HOM05D000237 ORTHO05D001145 1.3e-07 60.8 77 40.3
AUR62010043 Chenopodium quinoa HOM05D000237 ORTHO05D001145 1.7e-07 60.5 77 40.3
FAN20G0987 Fragaria x ananassa HOM05D000237 ORTHO05D001145 1.7e-07 60.5 63 42.9
HanXRQChr04g0112341 Helianthus annuus HOM05D000237 ORTHO05D001145 1.7e-07 60.5 65 43.1
RcHm_v2.0_Chr6g0251891 Rosa chinensis HOM05D000237 ORTHO05D001145 1.7e-07 60.5 63 41.3
Nn6g31994 Nelumbo nucifera HOM05D000237 ORTHO05D001145 2.2e-07 60.1 65 47.7
SGA_v2.0_scaffold119G32797 Striga asiatica HOM05D000237 ORTHO05D001145 2.2e-07 60.1 114 40.4
arahy.Tifrunner.gnm1.ann1.4SLH2G Arachis hypogaea HOM05D000237 ORTHO05D001145 3.7e-07 59.3 75 38.7
Phvul.011G035600 Phaseolus vulgaris HOM05D000237 ORTHO05D001145 3.7e-07 59.3 63 46.0
Ah.01g022970 Amaranthus hybridus HOM05D000237 ORTHO05D001145 4.8e-07 58.9 65 44.6
FvH4_2g01230 Fragaria vesca HOM05D000237 ORTHO05D001145 4.8e-07 58.9 63 41.3
FAN24G0311 Fragaria x ananassa HOM05D000237 ORTHO05D001145 4.8e-07 58.9 63 41.3
PSO541G1208 Papaver somniferum HOM05D000237 ORTHO05D001145 6.3e-07 58.5 65 44.6
PSO675G7812 Papaver somniferum HOM05D000237 ORTHO05D001145 6.3e-07 58.5 65 44.6
MBI08_g29139_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D001145 8.2e-07 58.2 69 43.5
TPR.G38470 Trifolium pratense HOM05D000237 ORTHO05D001145 8.2e-07 58.2 95 35.8
FAN27G2685 Fragaria x ananassa HOM05D000237 ORTHO05D001145 1.1e-06 57.8 62 40.3
ClCG02G011910 Citrullus lanatus HOM05D000237 ORTHO05D001145 1.8e-06 57.0 64 40.6
ECA247G2302 Erigeron canadensis HOM05D000237 ORTHO05D001145 1.8e-06 57.0 75 37.3
PSO528G0205 Papaver somniferum HOM05D000237 ORTHO05D001145 1.8e-06 57.0 70 38.6
GSVIVG01024026001 Vitis vinifera HOM05D000237 ORTHO05D001145 3.1e-06 56.2 64 42.2
A08p28920 Brassica napus HOM05D000237 ORTHO05D001145 4.1e-06 55.8 61 39.3
PSO170G0738 Papaver somniferum HOM05D000237 ORTHO05D001145 4.1e-06 55.8 70 37.1
GSVIVG01026462001 Vitis vinifera HOM05D000237 ORTHO05D001145 4.1e-06 55.8 70 42.9
CDE05G3406 Ceratophyllum demersum HOM05D000237 ORTHO05D001145 5.3e-06 55.5 64 42.2
COL.COLO4_07938 Corchorus olitorius HOM05D000237 ORTHO05D016966 5.3e-06 55.5 46 54.3
FvH4_1g24700 Fragaria vesca HOM05D000237 ORTHO05D001145 5.3e-06 55.5 75 45.3
FAN19G1791 Fragaria x ananassa HOM05D000237 ORTHO05D001145 5.3e-06 55.5 75 45.3
FAN20G0226 Fragaria x ananassa HOM05D000237 ORTHO05D001145 5.3e-06 55.5 68 44.1
FAN28G2239 Fragaria x ananassa HOM05D000237 ORTHO05D001145 5.3e-06 55.5 75 45.3
Sp1g19120 Schrenkiella parvula HOM05D000237 ORTHO05D001145 5.3e-06 55.5 72 38.9
CDE05G2131 Ceratophyllum demersum HOM05D000237 ORTHO05D001145 7.0e-06 55.1 64 40.6
FAN26G2988 Fragaria x ananassa HOM05D000237 ORTHO05D001145 7.0e-06 55.1 75 45.3
RcHm_v2.0_Chr6g0296761 Rosa chinensis HOM05D000237 ORTHO05D001145 7.0e-06 55.1 70 41.4
Aqoxy6G02169 Aquilegia oxysepala HOM05D000237 ORTHO05D001145 9.1e-06 54.7 65 41.5
EL10Ac4g09619 Beta vulgaris HOM05D000237 ORTHO05D001145 9.1e-06 54.7 67 44.8
C08p20920 Brassica napus HOM05D000237 ORTHO05D001145 9.1e-06 54.7 61 39.3
MELO3C020817.2 Cucumis melo HOM05D000237 ORTHO05D001145 9.1e-06 54.7 63 39.7
CsaV3_2G016090 Cucumis sativus L. HOM05D000237 ORTHO05D001145 9.1e-06 54.7 63 39.7
RcHm_v2.0_Chr2g0122201 Rosa chinensis HOM05D000237 ORTHO05D001145 9.1e-06 54.7 75 46.7


User provided reference genes

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