Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 3.3e-207 724.9 399 100.0
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 2.1e-65 253.8 540 37.4
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 5.3e-64 249.2 601 36.9
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 2.2e-62 243.8 627 34.8
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 1.8e-59 234.2 576 34.7
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 6.9e-56 222.2 630 32.2
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.8e-51 207.6 610 33.4
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 4.3e-50 203.0 497 34.6
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 7.4e-50 202.2 586 34.0
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.2e-46 190.7 564 33.3
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 2.2e-46 190.7 566 30.2
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 3.8e-46 189.9 555 31.0
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.9e-45 187.6 591 31.6
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 5.5e-45 186.0 628 29.8
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 7.2e-45 185.7 651 30.1
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 2.7e-44 183.7 660 30.6
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 7.9e-44 182.2 549 31.1
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 7.9e-44 182.2 526 32.5
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 1.8e-43 181.0 326 41.4
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 3.0e-43 180.3 474 32.9
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 3.9e-43 179.9 639 29.7
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 6.7e-43 179.1 559 31.3
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 6.7e-43 179.1 520 31.3
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 8.8e-43 178.7 585 31.1
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 8.8e-43 178.7 622 31.8
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.1e-42 178.3 616 31.5
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 2.0e-42 177.6 608 30.8
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.0e-42 177.6 615 31.2
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 2.0e-42 177.6 559 29.3
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 2.5e-42 177.2 536 31.9
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 3.3e-42 176.8 621 30.3
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 3.3e-42 176.8 293 41.3
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 4.3e-42 176.4 650 29.4
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 4.3e-42 176.4 546 31.0
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 5.7e-42 176.0 491 32.0
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 7.4e-42 175.6 477 32.5
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 9.7e-42 175.3 478 32.8
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.3e-41 174.9 558 30.6
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 1.3e-41 174.9 612 29.4
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 1.7e-41 174.5 323 39.9
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.7e-41 174.5 596 31.4
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 1.7e-41 174.5 626 30.7
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.2e-41 174.1 293 41.0
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 2.2e-41 174.1 601 30.9
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 3.7e-41 173.3 474 32.1
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.7e-41 173.3 293 40.6
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 6.3e-41 172.6 353 38.8
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 6.3e-41 172.6 625 29.6
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 8.2e-41 172.2 617 29.7
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 8.2e-41 172.2 643 28.6
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 1.4e-40 171.4 630 28.4
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 2.4e-40 170.6 456 32.2
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 2.4e-40 170.6 563 28.2
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 3.1e-40 170.2 493 32.3
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 4.1e-40 169.9 525 31.8
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 4.1e-40 169.9 609 29.2
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 4.1e-40 169.9 597 29.8
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 5.3e-40 169.5 308 39.3
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 9.1e-40 168.7 617 29.5
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 9.1e-40 168.7 607 29.2
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.2e-39 168.3 500 31.0
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 1.5e-39 167.9 587 31.2
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 1.5e-39 167.9 557 29.8
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.0e-39 167.5 617 31.3
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 3.4e-39 166.8 544 30.9
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 5.9e-39 166.0 276 41.7
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 1.7e-38 164.5 329 37.4
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 2.2e-38 164.1 582 29.7
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 2.2e-38 164.1 356 36.0
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 3.8e-38 163.3 617 29.0
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 5.0e-38 162.9 527 30.4
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 1.4e-37 161.4 600 29.3
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.4e-37 161.4 574 29.6
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 1.4e-37 161.4 326 38.0
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 2.5e-37 160.6 387 34.9
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 7.2e-37 159.1 326 35.6
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.2e-36 158.3 569 28.5
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 1.6e-36 157.9 621 28.8
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.7e-36 157.1 604 29.5
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 3.6e-36 156.8 329 37.1
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 6.1e-36 156.0 601 29.8
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 7.9e-36 155.6 307 37.5
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.0e-35 155.2 604 27.6
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 1.4e-35 154.8 585 28.4
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.4e-35 154.8 563 30.7
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.4e-35 154.8 287 38.7
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 1.4e-35 154.8 575 30.1
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 3.0e-35 153.7 410 33.2
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 3.9e-35 153.3 560 30.2
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 3.9e-35 153.3 537 31.3
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 1.1e-34 151.8 268 40.3
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 2.0e-34 151.0 523 29.4
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.6e-34 150.6 574 27.9
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 5.7e-34 149.4 291 37.1
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 1.3e-33 148.3 564 28.7
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 1.3e-33 148.3 558 29.4
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 3.7e-33 146.7 574 28.2
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 4.8e-33 146.4 542 29.3
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 4.8e-33 146.4 589 28.4
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 4.8e-33 146.4 356 35.4
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 6.3e-33 146.0 286 38.5
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.4e-32 144.8 273 36.3
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.4e-32 144.8 539 29.1
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 3.1e-32 143.7 552 29.0
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 3.1e-32 143.7 612 26.3
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 5.3e-32 142.9 589 29.4
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 9.1e-32 142.1 369 36.3
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 2.6e-31 140.6 558 28.0
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 4.5e-31 139.8 546 28.4
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 7.7e-31 139.0 320 34.1
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 1.3e-30 138.3 521 30.3
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 5.0e-30 136.3 501 31.9
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 5.0e-30 136.3 470 30.4
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 1.1e-29 135.2 583 29.0
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.2e-28 131.7 629 26.4
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 1.6e-28 131.3 600 28.8
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 2.7e-28 130.6 606 27.4
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 3.3e-26 123.6 441 29.9
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 3.3e-26 123.6 511 29.4
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 4.4e-26 123.2 395 30.6
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 9.7e-26 122.1 281 35.6
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 9.7e-26 122.1 281 35.6
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 1.3e-25 121.7 541 26.2
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 4.8e-25 119.8 425 29.9
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 3.1e-24 117.1 264 33.3
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 7.0e-24 115.9 371 30.2
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 5.9e-23 112.8 448 29.2
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 1.0e-22 112.1 213 37.1
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 1.7e-22 111.3 213 36.6
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.9e-21 107.8 615 26.2
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 4.2e-21 106.7 638 24.6
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 4.2e-21 106.7 120 54.2
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 7.2e-21 105.9 639 25.5
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 1.6e-20 104.8 533 26.3
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 8.0e-20 102.4 607 23.7
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 8.0e-20 102.4 496 28.4
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 1.0e-19 102.1 526 25.5
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 1.0e-19 102.1 584 26.0
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.7e-17 94.7 197 34.5
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 3.1e-16 90.5 548 24.8
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 4.1e-16 90.1 277 28.2
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.0e-15 87.8 227 30.4
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 3.5e-15 87.0 228 31.6
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 4.2e-13 80.1 148 31.8
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 5.5e-13 79.7 525 23.2
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 4.7e-12 76.6 275 28.4
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.8e-11 74.7 232 29.7
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 4.4e-10 70.1 242 26.4
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 7.5e-10 69.3 224 30.8
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 2.8e-09 67.4 83 45.8
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 3.7e-09 67.0 47 66.0
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 6.3e-09 66.2 77 46.8
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 1.4e-08 65.1 79 50.6
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 2.7e-07 60.8 114 36.0
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.3e-06 58.5 146 30.8
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.3e-06 58.5 396 22.7
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 1.7e-06 58.2 52 51.9
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 1.7e-06 58.2 52 51.9
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 5.0e-06 56.6 75 45.3
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 6.6e-06 56.2 68 47.1
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 6.6e-06 56.2 45 57.8
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 8.6e-06 55.8 68 45.6
Sp2g28160 Schrenkiella parvula HOM05D008017 ORTHO05D009829 8.6e-06 55.8 48 54.2


User provided reference genes

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