Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold11G05690 Striga asiatica HOM05D002932 ORTHO05D003208 1.2e-138 496.5 249 100.0
MSTRG.17303 Avicennia marina HOM05D002932 ORTHO05D003208 2.4e-59 233.0 243 55.1
MSTRG.4831 Avicennia marina HOM05D002932 ORTHO05D003208 3.2e-59 232.6 243 53.9
MSTRG.20870 Avicennia marina HOM05D002932 ORTHO05D003208 9.9e-53 211.1 240 50.8
Oeu054360.1 Olea europaea HOM05D002932 ORTHO05D003208 4.9e-52 208.8 262 51.5
SalBow3G2518 Salvia bowleyana HOM05D002932 ORTHO05D003208 2.8e-39 166.4 243 44.9
Oeu063673.2 Olea europaea HOM05D002932 ORTHO05D003208 1.0e-36 157.9 242 45.5
Cc02_g38700 Coffea canephora HOM05D002932 ORTHO05D003208 3.8e-36 156.0 260 39.2
unitig_62.g23806 Utricularia gibba HOM05D001977 ORTHO05D002246 5.1e-33 145.6 235 43.4
Nitab4.5_0009475g0010 Nicotiana tabacum HOM05D002932 ORTHO05D003208 2.5e-32 143.3 266 40.2
Atru.chr5.594 Acer truncatum HOM05D002932 ORTHO05D003208 4.3e-32 142.5 256 38.7
Actinidia20171 Actinidia chinensis HOM05D002932 ORTHO05D003208 7.4e-32 141.7 254 42.1
Nitab4.5_0000305g0360 Nicotiana tabacum HOM05D002932 ORTHO05D003208 1.3e-31 141.0 268 40.3
Peaxi162Scf00020g00174 Petunia axillaris HOM05D002932 ORTHO05D003208 2.8e-31 139.8 271 41.0
Dinv43873 Davidia involucrata HOM05D002932 ORTHO05D003208 6.9e-30 135.2 279 38.4
Dinv32532 Davidia involucrata HOM05D002932 ORTHO05D003208 3.4e-29 132.9 259 38.2
PGSC0003DMG402000198 Solanum tuberosum HOM05D002932 ORTHO05D003208 1.9e-27 127.1 274 36.9
Haze_15577 Corylus avellana HOM05D002932 ORTHO05D003208 2.5e-27 126.7 215 43.7
Haze_15582 Corylus avellana HOM05D002932 ORTHO05D003208 5.5e-27 125.6 252 40.1
Migut.B01809 Erythranthe guttata HOM05D002932 ORTHO05D003208 9.4e-27 124.8 183 45.4
DCAR_006952 Daucus carota HOM05D002932 ORTHO05D003208 1.2e-26 124.4 246 38.2
Ciclev10023540m.g Citrus clementina HOM05D002932 ORTHO05D003208 4.7e-26 122.5 247 36.0
PGR031G1724 Punica granatum HOM05D002932 ORTHO05D003208 3.9e-25 119.4 244 36.1
CAN.G78.138 Capsicum annuum HOM05D002932 ORTHO05D003208 1.5e-24 117.5 275 36.4
Manes.01G251500 Manihot esculenta HOM05D002932 ORTHO05D003208 4.4e-24 115.9 256 33.6
Sopen01g039030 Solanum pennellii HOM05D002932 ORTHO05D003208 9.7e-24 114.8 268 36.2
CSS0013096 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 2.8e-23 113.2 260 36.9
CSS0002659 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 8.2e-23 111.7 257 37.0
Solyc01g095240.3 Solanum lycopersicum HOM05D002932 ORTHO05D003208 1.1e-22 111.3 268 35.8
CAN.G694.15 Capsicum annuum HOM05D001716 ORTHO05D003208 2.4e-22 110.2 264 37.1
TAR374G1073 Trochodendron aralioides HOM05D002932 ORTHO05D003208 2.4e-22 110.2 203 36.9
Duzib133G1077 Durio zibethinus HOM05D002932 ORTHO05D003208 3.1e-22 109.8 253 32.8
Duzib138G0190 Durio zibethinus HOM05D002932 ORTHO05D003208 3.4e-21 106.3 253 32.4
GSVIVG01028788001 Vitis vinifera HOM05D003816 ORTHO05D004410 7.7e-21 105.1 261 34.5
Potri.014G091500 Populus trichocarpa HOM05D002932 ORTHO05D003208 1.3e-20 104.4 255 34.9
Sabra14G0066400 Salix brachista HOM05D002932 ORTHO05D003208 1.7e-20 104.0 262 34.0
Sabra12G0024300 Salix brachista HOM05D002932 ORTHO05D003208 2.2e-20 103.6 258 32.6
CAN.G959.5 Capsicum annuum HOM05D000001 ORTHO05D014548 3.8e-20 102.8 274 34.3
Duzib068G0647 Durio zibethinus HOM05D002932 ORTHO05D003208 3.8e-20 102.8 257 31.5
Thecc.03G188500 Theobroma cacao HOM05D002932 ORTHO05D003208 6.5e-20 102.1 257 32.3
Manes.14G020200 Manihot esculenta HOM05D002932 ORTHO05D003208 8.5e-20 101.7 258 32.6
Duzib205G0983 Durio zibethinus HOM05D002932 ORTHO05D003208 1.4e-19 100.9 257 31.5
Gohir.A08G127400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 3.2e-19 99.8 257 31.9
Gohir.D08G148800 Gossypium hirsutum HOM05D002932 ORTHO05D003208 3.2e-19 99.8 254 32.3
Gorai.004G154500 Gossypium raimondii HOM05D002932 ORTHO05D003208 3.2e-19 99.8 257 32.3
Potri.012G035200 Populus trichocarpa HOM05D002932 ORTHO05D003208 4.2e-19 99.4 259 32.4
SGA_v2.0_scaffold4G02273 Striga asiatica HOM05D002932 ORTHO05D003208 4.2e-19 99.4 249 35.3
Actinidia03151 Actinidia chinensis HOM05D002932 ORTHO05D003208 9.4e-19 98.2 256 31.6
Duzib084G0326 Durio zibethinus HOM05D002932 ORTHO05D003208 9.4e-19 98.2 258 31.0
COL.COLO4_30256 Corchorus olitorius HOM05D002932 ORTHO05D003208 1.6e-18 97.4 257 31.5
Hma1.2p1_0783F.1_g216930 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 1.6e-18 97.4 136 45.6
COL.COLO4_06371 Corchorus olitorius HOM05D002932 ORTHO05D003208 2.1e-18 97.1 221 33.0
unitig_0.g334 Utricularia gibba HOM05D002932 ORTHO05D003208 3.6e-18 96.3 240 32.9
Gohir.A12G254433 Gossypium hirsutum HOM05D002932 ORTHO05D003208 4.7e-18 95.9 261 32.6
Hma1.2p1_0142F.1_g064300 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 4.7e-18 95.9 258 31.4
Phvul.003G048900 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 4.7e-18 95.9 243 32.5
Nn7g37319 Nelumbo nucifera HOM05D002932 ORTHO05D003208 8.0e-18 95.1 208 37.5
Gohir.D12G255000 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.0e-17 94.7 262 32.1
Gorai.008G272600 Gossypium raimondii HOM05D002932 ORTHO05D003208 1.0e-17 94.7 262 32.1
VMungo0251G1401 Vigna mungo HOM05D002932 ORTHO05D003208 1.4e-17 94.4 243 32.9
Dinv35290 Davidia involucrata HOM05D002932 ORTHO05D003208 3.0e-17 93.2 256 28.1
Manes.06G154700 Manihot esculenta HOM05D002932 ORTHO05D003208 3.0e-17 93.2 261 31.8
Potri.015G026600 Populus trichocarpa HOM05D002932 ORTHO05D003208 3.0e-17 93.2 259 31.3
TAR629G3108 Trochodendron aralioides HOM05D002932 ORTHO05D003208 3.0e-17 93.2 257 31.9
CiPaw.02G036300 Carya illinoinensis HOM05D002932 ORTHO05D003208 3.9e-17 92.8 277 32.9
VMungo0464G0277 Vigna mungo HOM05D002932 ORTHO05D003208 3.9e-17 92.8 260 30.4
Glyma.18G121000 Glycine max HOM05D002932 ORTHO05D003208 5.2e-17 92.4 252 32.1
Nn1g01736 Nelumbo nucifera HOM05D002932 ORTHO05D003208 8.8e-17 91.7 210 34.8
Sabra15G0019600 Salix brachista HOM05D002932 ORTHO05D003208 8.8e-17 91.7 257 31.5
Lalb_Chr04g0256131 Lupinus albus HOM05D002932 ORTHO05D003208 1.1e-16 91.3 246 33.7
PGSC0003DMG400019420 Solanum tuberosum HOM05D002932 ORTHO05D003208 2.0e-16 90.5 245 33.5
Haze_00079 Corylus avellana HOM05D002932 ORTHO05D003208 2.6e-16 90.1 278 30.9
Sabra15G0022400 Salix brachista HOM05D002932 ORTHO05D003208 2.6e-16 90.1 257 31.5
Sopen10g005630 Solanum pennellii HOM05D002932 ORTHO05D003208 2.6e-16 90.1 245 33.1
Phvul.004G102700 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 4.4e-16 89.4 261 30.3
Dinv28362 Davidia involucrata HOM05D002932 ORTHO05D003208 1.3e-15 87.8 256 30.5
Cfa016327 Carpinus fangiana HOM05D002932 ORTHO05D003208 1.7e-15 87.4 273 30.4
TAR636G0499 Trochodendron aralioides HOM05D002932 ORTHO05D003208 2.2e-15 87.0 256 30.5
vmacro06597 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 3.7e-15 86.3 258 30.6
Glyma.08G299600 Glycine max HOM05D002932 ORTHO05D003208 4.8e-15 85.9 250 31.2
Thecc.01G350800 Theobroma cacao HOM05D002932 ORTHO05D003208 4.8e-15 85.9 125 40.0
Actinidia08604 Actinidia chinensis HOM05D002932 ORTHO05D003208 8.2e-15 85.1 261 31.0
Glyma.09G126400 Glycine max HOM05D002932 ORTHO05D003208 8.2e-15 85.1 253 29.2
Phvul.007G077100 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 8.2e-15 85.1 257 28.8
Manes.05G028200 Manihot esculenta HOM05D002932 ORTHO05D003208 1.1e-14 84.7 258 29.5
CAN.G1578.6 Capsicum annuum HOM05D000129 ORTHO05D000997 1.4e-14 84.3 252 35.7
QL09p012032 Quercus lobata HOM05D002932 ORTHO05D003208 1.4e-14 84.3 265 30.9
MELO3C006073.2 Cucumis melo HOM05D002932 ORTHO05D003208 1.8e-14 84.0 236 31.4
Glyma.01G045900 Glycine max HOM05D002932 ORTHO05D003208 1.8e-14 84.0 247 31.2
TWI23G0695 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 1.8e-14 84.0 259 29.3
MD01G1211600 Malus domestica HOM05D002932 ORTHO05D003208 3.1e-14 83.2 273 27.8
Glyma.02G106200 Glycine max HOM05D002932 ORTHO05D003208 4.1e-14 82.8 248 31.0
Eucgr.A02685 Eucalyptus grandis HOM05D002932 ORTHO05D003208 7.0e-14 82.0 259 29.0
CiPaw.06G005800 Carya illinoinensis HOM05D002932 ORTHO05D003208 1.2e-13 81.3 263 29.3
Glyma.20G164000 Glycine max HOM05D002932 ORTHO05D003208 1.2e-13 81.3 258 29.1
MD07G1282200 Malus domestica HOM05D002932 ORTHO05D003208 1.2e-13 81.3 266 30.5
Sed0015119 Sechium edule HOM05D002932 ORTHO05D003208 1.2e-13 81.3 263 28.9
Actinidia31853 Actinidia chinensis HOM05D002932 ORTHO05D003208 1.6e-13 80.9 196 32.1
Lalb_Chr21g0305311 Lupinus albus HOM05D002932 ORTHO05D003208 1.6e-13 80.9 262 28.6
Glyma.10G229200 Glycine max HOM05D002932 ORTHO05D003208 2.0e-13 80.5 261 29.9
TWI14G1190 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 2.0e-13 80.5 257 27.6
VMungo0720G0620 Vigna mungo HOM05D002932 ORTHO05D003208 2.0e-13 80.5 265 28.7
ClCG05G008540 Citrullus lanatus HOM05D002932 ORTHO05D003208 2.6e-13 80.1 271 29.2
Ciclev10005884m.g Citrus clementina HOM05D002932 ORTHO05D003208 2.6e-13 80.1 247 31.2
Glyma.16G173400 Glycine max HOM05D002932 ORTHO05D003208 2.6e-13 80.1 257 28.0
Psat0s694g0080 Pisum sativum HOM05D002932 ORTHO05D003208 2.6e-13 80.1 261 29.9
TPR.G7742 Trifolium pratense HOM05D002932 ORTHO05D003208 2.6e-13 80.1 261 28.4
CSS0021611 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 3.5e-13 79.7 255 32.2
CsaV3_3G008520 Cucumis sativus L. HOM05D002932 ORTHO05D003208 5.9e-13 79.0 236 30.5
Eucgr.K00306 Eucalyptus grandis HOM05D002932 ORTHO05D003208 5.9e-13 79.0 264 30.3
Medtr6g034060 Medicago truncatula HOM05D002932 ORTHO05D003208 5.9e-13 79.0 272 27.2
Prupe.2G304400 Prunus persica HOM05D002932 ORTHO05D003208 5.9e-13 79.0 270 30.0
Psat1g099320 Pisum sativum HOM05D002932 ORTHO05D003208 7.7e-13 78.6 265 30.2
MELO3C006960.2 Cucumis melo HOM05D002932 ORTHO05D003208 1.0e-12 78.2 264 28.8
Lalb_Chr02g0141341 Lupinus albus HOM05D002932 ORTHO05D003208 2.2e-12 77.0 254 29.5
Cpa.g.sc3.12 Carica papaya HOM05D002932 ORTHO05D003208 3.8e-12 76.3 193 33.7
Medtr6g034055 Medicago truncatula HOM05D002932 ORTHO05D003208 3.8e-12 76.3 264 28.4
CsaV3_3G021720 Cucumis sativus L. HOM05D002932 ORTHO05D003208 5.0e-12 75.9 264 28.4
Eucgr.E00092 Eucalyptus grandis HOM05D002932 ORTHO05D003208 5.0e-12 75.9 243 32.9
Medtr1g099440 Medicago truncatula HOM05D002932 ORTHO05D003208 8.5e-12 75.1 263 30.0
Sed0008251 Sechium edule HOM05D002932 ORTHO05D003208 8.5e-12 75.1 262 26.3
arahy.Tifrunner.gnm1.ann1.N7QM32 Arachis hypogaea HOM05D002932 ORTHO05D003208 1.5e-11 74.3 270 27.8
Lalb_Chr01g0009541 Lupinus albus HOM05D002932 ORTHO05D003208 1.5e-11 74.3 260 29.6
CAN.G1495.19 Capsicum annuum HOM05D000129 ORTHO05D000997 1.9e-11 73.9 164 41.5
Oeu009283.1 Olea europaea HOM05D002932 ORTHO05D003208 1.9e-11 73.9 200 31.0
TPR.G36623 Trifolium pratense HOM05D002932 ORTHO05D003208 1.9e-11 73.9 266 28.2
Rhsim09G0202600 Rhododendron simsii HOM05D002932 ORTHO05D003208 3.2e-11 73.2 187 34.2
PGR042G1004 Punica granatum HOM05D002932 ORTHO05D003208 4.2e-11 72.8 253 26.5
Rhsim03G0196300 Rhododendron simsii HOM05D002932 ORTHO05D003208 5.5e-11 72.4 257 29.6
SalBow5G2308 Salvia bowleyana HOM05D002932 ORTHO05D003208 5.5e-11 72.4 243 33.3
arahy.Tifrunner.gnm1.ann1.M5AIDB Arachis hypogaea HOM05D002932 ORTHO05D003208 7.2e-11 72.0 269 27.9
Lalb_Chr03g0035141 Lupinus albus HOM05D002932 ORTHO05D003208 7.2e-11 72.0 259 27.4
CSS0045579 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 1.2e-10 71.2 157 35.7
Psat1g106560 Pisum sativum HOM05D002932 ORTHO05D003208 1.6e-10 70.9 268 29.1
Lj2g0019721 Lotus japonicus HOM05D002932 ORTHO05D003208 2.1e-10 70.5 242 30.2
Lj2g0001659 Lotus japonicus HOM05D002932 ORTHO05D003208 3.6e-10 69.7 268 26.9
FvH4_7g30650 Fragaria vesca HOM05D002932 ORTHO05D003208 6.1e-10 68.9 265 27.5
FAN06G0995 Fragaria x ananassa HOM05D002932 ORTHO05D003208 6.1e-10 68.9 265 27.5
FAN10G0880 Fragaria x ananassa HOM05D002932 ORTHO05D003208 6.1e-10 68.9 265 28.3
FAN10G1573 Fragaria x ananassa HOM05D002932 ORTHO05D003208 6.1e-10 68.9 265 28.3
HanXRQChr16g0523761 Helianthus annuus HOM05D002932 ORTHO05D003208 6.1e-10 68.9 243 26.7
RcHm_v2.0_Chr1g0379591 Rosa chinensis HOM05D002932 ORTHO05D003208 6.1e-10 68.9 264 29.2
TPR.G36701 Trifolium pratense HOM05D002932 ORTHO05D003208 6.1e-10 68.9 273 26.7
FAN03G0587 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.0e-09 68.2 264 27.3
Sed0004021 Sechium edule HOM05D002932 ORTHO05D003208 1.0e-09 68.2 238 29.0
TPR.G37115 Trifolium pratense HOM05D002932 ORTHO05D003208 1.4e-09 67.8 184 34.2
Psat1g099240 Pisum sativum HOM05D002932 ORTHO05D003208 1.8e-09 67.4 272 30.1
Lsat_1_v5_gn_4_34860 Lactuca sativa HOM05D002932 ORTHO05D003208 2.3e-09 67.0 260 29.2
Oeu037130.1 Olea europaea HOM05D002932 ORTHO05D003208 4.0e-09 66.2 235 28.9
Ah.07g206300 Amaranthus hybridus HOM05D002932 ORTHO05D003208 6.7e-09 65.5 276 26.1
HanXRQChr14g0462641 Helianthus annuus HOM05D002932 ORTHO05D003208 6.7e-09 65.5 195 30.3
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.2e-08 64.7 246 28.0
ECA238G1001 Erigeron canadensis HOM05D002932 ORTHO05D003208 1.5e-08 64.3 255 27.1
Ah.13g069610 Amaranthus hybridus HOM05D002932 ORTHO05D003208 2.6e-08 63.5 272 26.1
FAN01G1179 Fragaria x ananassa HOM05D002932 ORTHO05D003208 2.6e-08 63.5 205 29.8
FAN06G4297 Fragaria x ananassa HOM05D002932 ORTHO05D003208 2.6e-08 63.5 205 29.8
Psat1g099360 Pisum sativum HOM05D002932 ORTHO05D003208 2.6e-08 63.5 271 29.2
CAN.G1578.16 Capsicum annuum HOM05D002932 ORTHO05D003208 4.4e-08 62.8 150 38.0
Lj5g0016966 Lotus japonicus HOM05D002932 ORTHO05D003208 4.4e-08 62.8 257 27.2
SalBow4G2867 Salvia bowleyana HOM05D002932 ORTHO05D003208 7.5e-08 62.0 185 30.3
AUR62021078 Chenopodium quinoa HOM05D002932 ORTHO05D003208 1.3e-07 61.2 255 25.9
AUR62031454 Chenopodium quinoa HOM05D002932 ORTHO05D003208 1.7e-07 60.8 256 27.3
Atru.chr1.321 Acer truncatum HOM05D002932 ORTHO05D003208 2.8e-07 60.1 286 26.2
MBI07_g44813_MAGBIO Magnolia biondii HOM05D002932 ORTHO05D003208 2.8e-07 60.1 199 31.2
Medtr7g039720 Medicago truncatula HOM05D002932 ORTHO05D003208 2.8e-07 60.1 247 30.4
TWI59G0718 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 3.7e-07 59.7 157 35.7
Aqoxy1G02826 Aquilegia oxysepala HOM05D002932 ORTHO05D003208 6.3e-07 58.9 222 28.8
Medtr5g039840 Medicago truncatula HOM05D002932 ORTHO05D003208 8.2e-07 58.5 245 29.8
EL10Ac3g05377 Beta vulgaris HOM05D002932 ORTHO05D003208 1.1e-06 58.2 256 27.3
CAN.G926.8 Capsicum annuum HOM05D002932 ORTHO05D003208 1.1e-06 58.2 258 27.9
CsaV3_5G000930 Cucumis sativus L. HOM05D002932 ORTHO05D003208 1.4e-06 57.8 209 28.2
Solyc03g007775.2 Solanum lycopersicum HOM05D002932 ORTHO05D003208 3.1e-06 56.6 260 28.1
CANSAT21G2430 Cannabis sativa HOM05D002932 ORTHO05D003208 4.1e-06 56.2 277 27.8
HanXRQChr07g0207101 Helianthus annuus HOM05D002932 ORTHO05D003208 7.0e-06 55.5 162 32.1
Gohir.A11G013400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 9.1e-06 55.1 190 29.5


User provided reference genes

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