Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold11G05679 Striga asiatica HOM05D004139 ORTHO05D004873 7.0e-235 817.0 439 100.0
SGA_v2.0_scaffold43G16391 Striga asiatica HOM05D004139 ORTHO05D004873 2.3e-145 519.6 521 65.1
Migut.N01462 Erythranthe guttata HOM05D004139 ORTHO05D004873 2.6e-125 453.0 526 52.7
SalBow5G4419 Salvia bowleyana HOM05D004139 ORTHO05D004873 1.3e-124 450.7 535 56.3
MSTRG.28234 Avicennia marina HOM05D004139 ORTHO05D004873 5.2e-121 438.7 535 51.4
SalBow5G0787 Salvia bowleyana HOM05D004139 ORTHO05D004873 1.7e-119 433.7 535 55.3
Oeu018961.1 Olea europaea HOM05D004139 ORTHO05D004873 2.4e-118 429.9 535 51.4
Dinv32515 Davidia involucrata HOM05D004139 ORTHO05D004873 1.2e-117 427.6 536 50.6
MSTRG.4838 Avicennia marina HOM05D004139 ORTHO05D004873 3.5e-117 426.0 535 50.7
SalBow3G2657 Salvia bowleyana HOM05D004139 ORTHO05D004873 7.7e-117 424.9 535 49.2
CSS0009771 Camellia sinensis var. sinensis HOM05D004139 ORTHO05D004873 7.2e-115 418.3 537 48.6
Actinidia10064 Actinidia chinensis HOM05D004139 ORTHO05D004873 1.6e-114 417.2 542 48.9
Peaxi162Scf00020g01226 Petunia axillaris HOM05D004139 ORTHO05D004873 1.4e-113 414.1 535 49.0
Potri.014G089400 Populus trichocarpa HOM05D004139 ORTHO05D004873 8.8e-113 411.4 536 48.1
CAN.G78.121 Capsicum annuum HOM05D004139 ORTHO05D004873 2.0e-112 410.2 535 47.9
Rhsim07G0011100 Rhododendron simsii HOM05D004139 ORTHO05D004873 2.0e-112 410.2 537 49.2
MSTRG.17294 Avicennia marina HOM05D004139 ORTHO05D004873 5.7e-112 408.7 534 48.1
Sopen01g038830 Solanum pennellii HOM05D004139 ORTHO05D004873 5.7e-112 408.7 535 47.9
PGSC0003DMG400000190 Solanum tuberosum HOM05D004139 ORTHO05D004873 7.5e-112 408.3 535 47.9
Solyc01g095040.3 Solanum lycopersicum HOM05D004139 ORTHO05D004873 1.7e-111 407.1 535 47.7
Potri.002G163200 Populus trichocarpa HOM05D004139 ORTHO05D004873 3.7e-111 406.0 535 47.5
Sed0003876 Sechium edule HOM05D004139 ORTHO05D004873 1.8e-110 403.7 535 46.7
Manes.01G252900 Manihot esculenta HOM05D004139 ORTHO05D004873 4.1e-110 402.5 541 47.9
ClCG05G001290 Citrullus lanatus HOM05D004139 ORTHO05D004873 2.7e-109 399.8 534 47.2
Haze_15555 Corylus avellana HOM05D004139 ORTHO05D004873 4.5e-109 399.1 543 47.3
Manes.05G030100 Manihot esculenta HOM05D004139 ORTHO05D004873 5.9e-109 398.7 539 46.9
Cfa003879 Carpinus fangiana HOM05D004139 ORTHO05D004873 7.7e-109 398.3 536 47.2
COL.COLO4_12769 Corchorus olitorius HOM05D004139 ORTHO05D004873 2.3e-108 396.7 536 46.6
vmacro13237 Vaccinium macrocarpon HOM05D004139 ORTHO05D004873 3.8e-108 396.0 556 46.6
Atru.chr5.554 Acer truncatum HOM05D004139 ORTHO05D004873 5.0e-108 395.6 538 47.2
Sabra14G0065100 Salix brachista HOM05D004139 ORTHO05D004873 1.1e-107 394.4 536 47.6
DCAR_008636 Daucus carota HOM05D004139 ORTHO05D004873 1.5e-107 394.0 541 47.3
Oeu054345.1 Olea europaea HOM05D004139 ORTHO05D004873 1.5e-107 394.0 537 49.9
Duzib138G1274 Durio zibethinus HOM05D004139 ORTHO05D004873 1.9e-107 393.7 536 47.0
Gohir.D11G096700 Gossypium hirsutum HOM05D004139 ORTHO05D004873 5.5e-107 392.1 536 46.6
Nitab4.5_0000915g0160 Nicotiana tabacum HOM05D004139 ORTHO05D004873 5.5e-107 392.1 566 45.9
TWI59G0388 Tripterygium wilfordii HOM05D004139 ORTHO05D004873 9.5e-107 391.3 536 46.8
CANSAT56G2748 Cannabis sativa HOM05D004139 ORTHO05D004873 2.8e-106 389.8 544 47.4
Gorai.007G103000 Gossypium raimondii HOM05D004139 ORTHO05D004873 6.1e-106 388.7 536 46.5
Gohir.A11G091900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 1.0e-105 387.9 536 46.3
Sabra02G0147300 Salix brachista HOM05D004139 ORTHO05D004873 1.0e-105 387.9 582 43.6
Dinv43858 Davidia involucrata HOM05D004139 ORTHO05D004873 1.4e-105 387.5 441 52.4
Nn6g32432 Nelumbo nucifera HOM05D004139 ORTHO05D004873 1.4e-105 387.5 544 47.6
Thecc.01G353300 Theobroma cacao HOM05D004139 ORTHO05D004873 1.4e-105 387.5 536 46.5
CiPaw.02G034000 Carya illinoinensis HOM05D004139 ORTHO05D004873 3.0e-105 386.3 543 45.7
Gohir.A08G132500 Gossypium hirsutum HOM05D004139 ORTHO05D004873 3.0e-105 386.3 536 46.5
QL04p055168 Quercus lobata HOM05D004139 ORTHO05D004873 3.0e-105 386.3 543 46.4
MELO3C006085.2 Cucumis melo HOM05D004139 ORTHO05D004873 4.0e-105 386.0 534 46.1
Prupe.2G176300 Prunus persica HOM05D004139 ORTHO05D004873 1.2e-104 384.4 536 46.5
Gorai.004G159800 Gossypium raimondii HOM05D004139 ORTHO05D004873 1.5e-104 384.0 536 46.6
HanXRQChr06g0170301 Helianthus annuus HOM05D004139 ORTHO05D004873 2.0e-104 383.6 523 47.4
ECA236G4877 Erigeron canadensis HOM05D004139 ORTHO05D004873 2.6e-104 383.3 528 45.8
Gohir.D08G153900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 4.4e-104 382.5 535 46.5
Cpa.g.sc184.28 Carica papaya HOM05D004139 ORTHO05D004873 7.5e-104 381.7 539 46.9
Ciclev10019285m.g Citrus clementina HOM05D004139 ORTHO05D004873 9.8e-104 381.3 538 46.7
TAR629G2568 Trochodendron aralioides HOM05D004139 ORTHO05D004873 1.3e-103 380.9 539 45.1
MD01G1070100 Malus domestica HOM05D004139 ORTHO05D004873 8.3e-103 378.3 536 45.9
Eucgr.D02321 Eucalyptus grandis HOM05D004139 ORTHO05D004873 1.1e-102 377.9 536 44.8
PGR031G0269 Punica granatum HOM05D004139 ORTHO05D004873 1.1e-102 377.9 545 46.4
Phvul.008G058900 Phaseolus vulgaris HOM05D004139 ORTHO05D004873 1.2e-101 374.4 529 45.4
Cc02_g38470 Coffea canephora HOM05D004139 ORTHO05D004873 2.7e-101 373.2 537 48.8
PSO478G1271 Papaver somniferum HOM05D004139 ORTHO05D004873 1.3e-100 370.9 540 45.9
RcHm_v2.0_Chr1g0357601 Rosa chinensis HOM05D004139 ORTHO05D004873 1.3e-100 370.9 544 45.8
Sc23g0002600 Simmondsia chinensis HOM05D004139 ORTHO05D004873 1.7e-100 370.5 518 48.1
Aqoxy7G00189 Aquilegia oxysepala HOM05D004139 ORTHO05D004873 2.3e-100 370.2 537 46.2
FvH4_7g15180 Fragaria vesca HOM05D004139 ORTHO05D004873 2.3e-100 370.2 531 50.3
FAN03G2760 Fragaria x ananassa HOM05D004139 ORTHO05D004873 3.9e-100 369.4 531 45.8
Glyma.09G255200 Glycine max HOM05D004139 ORTHO05D004873 8.6e-100 368.2 533 48.4
AT1G01510 Arabidopsis thaliana HOM05D004139 ORTHO05D004873 1.1e-99 367.9 534 45.7
VMungo1383G0046 Vigna mungo HOM05D004139 ORTHO05D004873 1.5e-99 367.5 529 47.8
Ah.05g180200 Amaranthus hybridus HOM05D004139 ORTHO05D004873 1.9e-99 367.1 531 47.1
THA.LOC104801394 Tarenaya hassleriana HOM05D004139 ORTHO05D004873 1.9e-99 367.1 541 45.1
HanXRQChr04g0121381 Helianthus annuus HOM05D004139 ORTHO05D004873 2.5e-99 366.7 530 46.6
TAR636G3175 Trochodendron aralioides HOM05D004139 ORTHO05D004873 4.3e-99 365.9 526 46.0
Lalb_Chr03g0038301 Lupinus albus HOM05D004139 ORTHO05D004873 5.6e-99 365.5 532 48.1
AL1G10900 Arabidopsis lyrata HOM05D004139 ORTHO05D004873 7.3e-99 365.2 534 45.5
PSO782G2833 Papaver somniferum HOM05D004139 ORTHO05D004873 9.5e-99 364.8 533 44.7
Lalb_Chr19g0126891 Lupinus albus HOM05D004139 ORTHO05D004873 1.6e-98 364.0 529 45.4
MD07G1132400 Malus domestica HOM05D004139 ORTHO05D004873 1.6e-98 364.0 537 44.7
Hma1.2p1_0623F.1_g191015 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 2.1e-98 363.6 527 45.4
arahy.Tifrunner.gnm1.ann1.Y78NPN Arachis hypogaea HOM05D004139 ORTHO05D004873 3.6e-98 362.8 531 45.6
Aa31LG1G10760 Aethionema arabicum HOM05D004139 ORTHO05D004873 6.1e-98 362.1 526 44.9
CARHR000860 Cardamine hirsuta HOM05D004139 ORTHO05D004873 1.0e-97 361.3 536 45.1
BolC5t28840H Brassica oleracea HOM05D004139 ORTHO05D004873 1.4e-97 360.9 539 44.7
Nn1g01661 Nelumbo nucifera HOM05D004139 ORTHO05D004873 1.4e-97 360.9 547 44.4
Carub.0001s0073 Capsella rubella HOM05D004139 ORTHO05D004873 1.8e-97 360.5 535 45.4
Sp1g00800 Schrenkiella parvula HOM05D004139 ORTHO05D004873 1.8e-97 360.5 541 45.3
CiPaw.01G065900 Carya illinoinensis HOM05D004139 ORTHO05D004873 2.3e-97 360.1 519 44.5
Hma1.2p1_0627F.1_g191690 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 2.3e-97 360.1 516 46.5
C05p00510 Brassica napus HOM05D004139 ORTHO05D004873 3.1e-97 359.8 539 44.9
Thhalv10007060m.g Eutrema salsugineum HOM05D004139 ORTHO05D004873 3.1e-97 359.8 532 45.5
Glyma.18G237800 Glycine max HOM05D004139 ORTHO05D004873 3.1e-97 359.8 530 47.0
Lj1g0024287 Lotus japonicus HOM05D004139 ORTHO05D004873 3.1e-97 359.8 533 44.1
FAN10G1735 Fragaria x ananassa HOM05D004139 ORTHO05D004873 5.2e-97 359.0 551 48.6
A10p00480 Brassica napus HOM05D004139 ORTHO05D004873 6.8e-97 358.6 539 44.9
AUR62022611 Chenopodium quinoa HOM05D004139 ORTHO05D004873 8.9e-97 358.2 531 44.3
FAN10G1927 Fragaria x ananassa HOM05D004139 ORTHO05D004873 8.9e-97 358.2 551 48.6
Hund27248 Selenicereus undatus HOM05D004139 ORTHO05D004873 2.6e-96 356.7 530 44.5
BcaB03g13589 Brassica carinata HOM05D004139 ORTHO05D004873 3.4e-96 356.3 531 44.8
FAN01G2783 Fragaria x ananassa HOM05D004139 ORTHO05D004873 7.5e-96 355.1 551 44.1
EL10Ac1g00363 Beta vulgaris HOM05D004139 ORTHO05D004873 1.7e-95 354.0 529 44.4
BraA10t42327Z Brassica rapa HOM05D004139 ORTHO05D004873 1.7e-95 354.0 538 43.9
ATR0661G136 Amborella trichopoda HOM05D004139 ORTHO05D004873 3.7e-95 352.8 545 45.1
Actinidia20155 Actinidia chinensis HOM05D004139 ORTHO05D004873 1.4e-94 350.9 544 44.9
CsaV3_3G008650 Cucumis sativus L. HOM05D004139 ORTHO05D004873 4.1e-94 349.4 427 49.6
Medtr7g078990 Medicago truncatula HOM05D004139 ORTHO05D004873 9.2e-94 348.2 532 44.5
FAN06G0792 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.2e-93 347.8 549 43.5
TPR.G22297 Trifolium pratense HOM05D004139 ORTHO05D004873 2.7e-93 346.7 539 44.3
FAN06G4247 Fragaria x ananassa HOM05D004139 ORTHO05D004873 3.0e-92 343.2 543 43.5
MBI04_g15071_MAGBIO Magnolia biondii HOM05D004139 ORTHO05D004873 4.3e-91 339.3 540 44.1
arahy.Tifrunner.gnm1.ann1.G1BLE5 Arachis hypogaea HOM05D004139 ORTHO05D004873 2.1e-90 337.0 519 48.4
Lsat_1_v5_gn_7_3821 Lactuca sativa HOM05D004139 ORTHO05D004873 8.9e-89 331.6 497 45.5
CDE02G4181 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 1.2e-88 331.3 540 42.4
Ca_07939_v3 Cicer arietinum L. HOM05D004139 ORTHO05D004873 2.6e-88 330.1 530 44.0
Lj9A588G64 Lonicera japonica HOM05D004139 ORTHO05D004873 7.5e-88 328.6 503 44.7
Os10g0533000 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 2.7e-85 320.1 554 41.0
Zm00001eb001910 Zea mays HOM05D004139 ORTHO05D004873 7.3e-83 312.0 536 40.1
Zm00001eb021820 Zea mays HOM05D004139 ORTHO05D004873 1.4e-81 307.8 544 39.7
Psat3g106200 Pisum sativum HOM05D004139 ORTHO05D004873 2.6e-80 303.5 437 44.9
AUR62004405 Chenopodium quinoa HOM05D004139 ORTHO05D004873 1.3e-79 301.2 541 40.3
SEGI_14155 Sequoiadendron giganteum HOM05D004139 ORTHO05D004873 4.9e-79 299.3 545 37.6
CDE11G0755 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 5.4e-78 295.8 443 43.1
Os03g0126100 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 1.6e-77 294.3 440 44.1
Hund16674 Selenicereus undatus HOM05D004139 ORTHO05D004873 4.7e-74 282.7 513 39.6
Sed0010543 Sechium edule HOM05D004139 ORTHO05D004873 6.2e-74 282.3 476 42.0
SMO259G0050 Selaginella moellendorffii HOM05D004139 ORTHO05D004873 2.9e-63 246.9 509 34.2
HPP92_003462 Vanilla planifolia HOM05D004139 ORTHO05D004873 3.9e-60 236.5 476 37.6
unitig_748.g7106 Utricularia gibba HOM05D004139 ORTHO05D004873 3.6e-58 229.9 479 37.0
AagrBONN_evm.TU.Sc2ySwM_117.2892 Anthoceros agrestis HOM05D004139 ORTHO05D004873 3.4e-56 223.4 543 33.5
Nitab4.5_0022943g0010 Nicotiana tabacum HOM05D004139 ORTHO05D004873 9.9e-56 221.9 327 44.3
Duzib133G0727 Durio zibethinus HOM05D004139 ORTHO05D004873 1.7e-55 221.1 480 36.7
Mapoly0077s0060 Marchantia polymorpha HOM05D004139 ORTHO05D004873 4.9e-55 219.5 549 34.2
Pp3c15_25330 Physcomitrium patens HOM05D004139 ORTHO05D004873 2.4e-54 217.2 538 32.7
unitig_0.g2768 Utricularia gibba HOM05D004139 ORTHO05D004873 1.8e-52 211.1 342 43.0
Pp3c9_22880 Physcomitrium patens HOM05D004139 ORTHO05D004873 6.2e-50 202.6 537 32.0
GSVIVG01026959001 Vitis vinifera HOM05D004139 ORTHO05D004873 8.1e-50 202.2 188 60.6
Hma1.2p1_2961F.1_g330910 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 1.1e-49 201.8 302 46.0
SHI13391 Sapria himalayana HOM05D004139 ORTHO05D004873 3.2e-46 190.3 186 57.5
Hund16641 Selenicereus undatus HOM05D004139 ORTHO05D004873 7.4e-43 179.1 369 38.2
GSVIVG01026958001 Vitis vinifera HOM05D004139 ORTHO05D004873 3.1e-41 173.7 139 63.3
RcHm_v2.0_Chr1g0358141 Rosa chinensis HOM05D004139 ORTHO05D004873 7.6e-40 169.1 175 54.3
RcHm_v2.0_Chr1g0357951 Rosa chinensis HOM05D004139 ORTHO05D004873 2.5e-38 164.1 161 54.7
Pp3c8_4660 Physcomitrium patens HOM05D004139 ORTHO05D004873 1.6e-34 151.4 188 45.7
Pp3c3_30270 Physcomitrium patens HOM05D004139 ORTHO05D004873 1.0e-31 142.1 187 43.9
RcHm_v2.0_Chr1g0357901 Rosa chinensis HOM05D004139 ORTHO05D004873 5.7e-27 126.3 117 58.1
CBR_g48406 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-25 121.3 189 39.7
RcHm_v2.0_Chr1g0357981 Rosa chinensis HOM05D004139 ORTHO05D004873 9.1e-25 119.0 97 60.8
RcHm_v2.0_Chr1g0358061 Rosa chinensis HOM05D004139 ORTHO05D004873 1.2e-24 118.6 136 50.0
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 1.0e-23 115.5 136 48.5
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 8.5e-23 112.5 136 47.8
SHI13389 Sapria himalayana HOM05D004139 ORTHO05D004873 1.9e-22 111.3 155 42.6
HPP92_003463 Vanilla planifolia HOM05D004139 ORTHO05D004873 1.8e-20 104.8 62 72.6
RcHm_v2.0_Chr5g0017371 Rosa chinensis HOM05D004139 ORTHO05D004873 2.2e-18 97.8 60 71.7
AUR62028439 Chenopodium quinoa HOM05D004139 ORTHO05D004873 6.3e-18 96.3 58 74.1
EL10Ac4g08914 Beta vulgaris HOM05D000251 ORTHO05D004873 8.2e-18 95.9 66 69.7
RcHm_v2.0_Chr1g0356181 Rosa chinensis HOM05D004139 ORTHO05D004873 1.8e-17 94.7 58 72.4
EL10Ac3g06780 Beta vulgaris HOM05D004139 ORTHO05D004873 2.4e-17 94.4 70 65.7
RcHm_v2.0_Chr1g0358161 Rosa chinensis HOM05D004139 ORTHO05D004873 2.4e-17 94.4 84 60.7
RcHm_v2.0_Chr1g0358081 Rosa chinensis HOM05D004139 ORTHO05D004873 1.4e-12 78.6 51 72.5
EL10Ac9g20897 Beta vulgaris HOM05D000877 ORTHO05D012137 2.2e-10 71.2 50 58.0
FAN06G0709 Fragaria x ananassa HOM05D004139 ORTHO05D000018 8.2e-10 69.3 68 52.9
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 1.8e-09 68.2 53 67.9
CBR_g48408 Chara braunii HOM05D004139 ORTHO05D004873 5.3e-09 66.6 68 50.0
PRCOL_00004197 Prasinoderma coloniale HOM05D001181 ORTHO05D000673 1.6e-08 65.1 108 37.0
TWI81G0351 Tripterygium wilfordii HOM05D000866 ORTHO05D000673 8.5e-07 59.3 161 31.1
PRCOL_00003376 Prasinoderma coloniale HOM05D004139 ORTHO05D004873 1.1e-06 58.9 75 38.7
arahy.Tifrunner.gnm1.ann1.1UBI84 Arachis hypogaea HOM05D000866 ORTHO05D000673 1.5e-06 58.5 158 27.2
MBI01_g35856_MAGBIO Magnolia biondii HOM05D000866 ORTHO05D000673 1.9e-06 58.2 165 29.7
PGR031G1430 Punica granatum HOM05D000866 ORTHO05D000673 1.9e-06 58.2 160 30.0
Gohir.D03G156600 Gossypium hirsutum HOM05D000866 ORTHO05D000673 2.5e-06 57.8 169 27.8
Gohir.A03G012900 Gossypium hirsutum HOM05D000866 ORTHO05D000673 3.2e-06 57.4 169 27.8
MBI01_g11035_MAGBIO Magnolia biondii HOM05D000866 ORTHO05D000673 3.2e-06 57.4 165 29.7
QL05p024961 Quercus lobata HOM05D000866 ORTHO05D000673 3.2e-06 57.4 163 28.8
arahy.Tifrunner.gnm1.ann1.6JB3CU Arachis hypogaea HOM05D000866 ORTHO05D000673 5.5e-06 56.6 158 26.6
Manes.01G070300 Manihot esculenta HOM05D000866 ORTHO05D000673 5.5e-06 56.6 165 27.3
unitig_0.g2769 Utricularia gibba HOM05D004139 ORTHO05D004873 7.2e-06 56.2 83 47.0


User provided reference genes

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