Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold11G05664 Striga asiatica HOM05D006065 ORTHO05D007672 1.5e-78 296.2 159 100.0
SGA_v2.0_scaffold43G16421 Striga asiatica HOM05D006065 ORTHO05D007672 2.7e-51 205.7 154 74.7
MSTRG.4858 Avicennia marina HOM05D006065 ORTHO05D007672 3.5e-43 178.7 158 66.5
Migut.N01441 Erythranthe guttata HOM05D006065 ORTHO05D007672 8.9e-39 164.1 153 61.4
MSTRG.28221 Avicennia marina HOM05D006065 ORTHO05D007672 5.1e-34 148.3 155 56.8
Oeu010611.1 Olea europaea HOM05D006065 ORTHO05D007672 6.2e-32 141.4 150 57.3
SalBow3G2602 Salvia bowleyana HOM05D006065 ORTHO05D007672 8.1e-32 141.0 145 57.2
unitig_8.g3395 Utricularia gibba HOM05D006065 ORTHO05D007672 1.1e-25 120.6 149 49.7
Dinv32472 Davidia involucrata HOM05D006065 ORTHO05D007672 3.3e-25 119.0 148 49.3
Cfa003936 Carpinus fangiana HOM05D006065 ORTHO05D007672 2.1e-24 116.3 159 44.7
Dinv43807 Davidia involucrata HOM05D006065 ORTHO05D007672 3.6e-24 115.5 141 51.1
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 2.4e-23 112.8 141 50.4
Actinidia10016 Actinidia chinensis HOM05D006065 ORTHO05D007672 4.0e-23 112.1 141 46.1
Haze_15490 Corylus avellana HOM05D006065 ORTHO05D007672 6.8e-23 111.3 179 43.6
VMungo1383G0981 Vigna mungo HOM05D006065 ORTHO05D007672 2.6e-22 109.4 150 46.7
QL08p049008 Quercus lobata HOM05D006065 ORTHO05D007672 3.4e-22 109.0 144 48.6
Cc02_g37900 Coffea canephora HOM05D006065 ORTHO05D007672 4.4e-22 108.6 129 53.5
Oeu020560.2 Olea europaea HOM05D006065 ORTHO05D007672 4.9e-21 105.1 207 39.6
Ciclev10022632m.g Citrus clementina HOM05D006065 ORTHO05D007672 6.4e-21 104.8 141 43.3
Potri.014G083100 Populus trichocarpa HOM05D006065 ORTHO05D007672 6.4e-21 104.8 134 50.7
Atru.chr5.461 Acer truncatum HOM05D006065 ORTHO05D007672 1.1e-20 104.0 141 46.8
vmacro13279 Vaccinium macrocarpon HOM05D006065 ORTHO05D007672 1.4e-20 103.6 147 46.9
Actinidia20914 Actinidia chinensis HOM05D006065 ORTHO05D007672 1.9e-20 103.2 139 45.3
TAR629G3005 Trochodendron aralioides HOM05D006065 ORTHO05D007672 1.9e-20 103.2 140 48.6
Phvul.008G067900 Phaseolus vulgaris HOM05D006065 ORTHO05D007672 2.4e-20 102.8 148 43.9
DCAR_006926 Daucus carota HOM05D006065 ORTHO05D007672 4.2e-20 102.1 138 48.6
Thecc.01G360200 Theobroma cacao HOM05D006065 ORTHO05D007672 4.2e-20 102.1 147 41.5
Sabra14G0060500 Salix brachista HOM05D006065 ORTHO05D007672 9.3e-20 100.9 132 50.0
Peaxi162Scf00020g00240 Petunia axillaris HOM05D006065 ORTHO05D007672 1.2e-19 100.5 134 46.3
Glyma.09G262200 Glycine max HOM05D006065 ORTHO05D007672 1.6e-19 100.1 145 44.1
Cpa.g.sc18.247 Carica papaya HOM05D006065 ORTHO05D007672 2.7e-19 99.4 150 41.3
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 3.5e-19 99.0 144 41.7
Manes.05G035300 Manihot esculenta HOM05D006065 ORTHO05D007672 3.5e-19 99.0 161 42.9
Sc01g0003370 Simmondsia chinensis HOM05D006065 ORTHO05D007672 3.5e-19 99.0 149 41.6
Sopen01g038320 Solanum pennellii HOM05D006065 ORTHO05D007672 4.6e-19 98.6 138 44.9
Glyma.18G230000 Glycine max HOM05D006065 ORTHO05D007672 6.0e-19 98.2 145 42.1
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 7.8e-19 97.8 166 40.4
Medtr7g076690 Medicago truncatula HOM05D006065 ORTHO05D007672 1.7e-18 96.7 150 43.3
COL.COLO4_12704 Corchorus olitorius HOM05D006065 ORTHO05D007672 2.3e-18 96.3 140 42.1
PGSC0003DMG400021646 Solanum tuberosum HOM05D006065 ORTHO05D007672 3.9e-18 95.5 125 45.6
Lj1g0009386 Lotus japonicus HOM05D006065 ORTHO05D007672 5.1e-18 95.1 143 45.5
PGSC0003DMG400000036 Solanum tuberosum HOM05D006065 ORTHO05D007672 5.1e-18 95.1 144 42.4
CAN.G78.55 Capsicum annuum HOM05D006065 ORTHO05D007672 8.7e-18 94.4 142 42.3
CsaV3_3G008970 Cucumis sativus L. HOM05D006065 ORTHO05D007672 1.1e-17 94.0 150 43.3
MBI18_g21561_MAGBIO Magnolia biondii HOM05D006065 ORTHO05D007672 1.5e-17 93.6 142 42.3
Nitab4.5_0008002g0050 Nicotiana tabacum HOM05D006065 ORTHO05D007672 2.5e-17 92.8 127 46.5
Prupe.2G168300 Prunus persica HOM05D006065 ORTHO05D007672 4.3e-17 92.0 141 41.1
Hma1.2p1_0001F.1_g001420 Hydrangea macrophylla HOM05D006065 ORTHO05D007672 5.6e-17 91.7 156 42.3
Sed0025321 Sechium edule HOM05D006065 ORTHO05D007672 5.6e-17 91.7 148 41.2
TAR374G1295 Trochodendron aralioides HOM05D006065 ORTHO05D007672 5.6e-17 91.7 139 43.2
Lalb_Chr19g0127061 Lupinus albus HOM05D006065 ORTHO05D007672 7.3e-17 91.3 143 39.9
ClCG05G001580 Citrullus lanatus HOM05D006065 ORTHO05D007672 9.6e-17 90.9 146 42.5
Sopen05g028300 Solanum pennellii HOM05D006065 ORTHO05D007672 9.6e-17 90.9 124 45.2
Aa31LG5G450 Aethionema arabicum HOM05D006065 ORTHO05D007672 1.3e-16 90.5 146 41.1
Sabra02G0126300 Salix brachista HOM05D006065 ORTHO05D007672 1.3e-16 90.5 135 46.7
HanXRQChr13g0426531 Helianthus annuus HOM05D006065 ORTHO05D007672 1.6e-16 90.1 139 41.0
Nitab4.5_0001702g0100 Nicotiana tabacum HOM05D006065 ORTHO05D007672 2.1e-16 89.7 127 45.7
RcHm_v2.0_Chr1g0355101 Rosa chinensis HOM05D006065 ORTHO05D007672 2.1e-16 89.7 151 39.1
Solyc05g049940.3 Solanum lycopersicum HOM05D006065 ORTHO05D007672 2.1e-16 89.7 124 42.7
Gorai.007G098900 Gossypium raimondii HOM05D006065 ORTHO05D007672 2.8e-16 89.4 144 39.6
GSVIVG01018349001 Vitis vinifera HOM05D006065 ORTHO05D007672 2.8e-16 89.4 127 44.1
Lsat_1_v5_gn_7_4500 Lactuca sativa HOM05D006065 ORTHO05D007672 3.6e-16 89.0 142 43.0
Nitab4.5_0005277g0010 Nicotiana tabacum HOM05D006065 ORTHO05D007672 3.6e-16 89.0 128 44.5
CiPaw.02G030100 Carya illinoinensis HOM05D006065 ORTHO05D007672 4.8e-16 88.6 128 46.1
Duzib133G1075 Durio zibethinus HOM05D006065 ORTHO05D007672 6.2e-16 88.2 140 38.6
Gohir.A08G131000 Gossypium hirsutum HOM05D006065 ORTHO05D007672 6.2e-16 88.2 140 37.9
THA.LOC104817023 Tarenaya hassleriana HOM05D006065 ORTHO05D007672 6.2e-16 88.2 140 42.1
arahy.Tifrunner.gnm1.ann1.QD83TI Arachis hypogaea HOM05D006065 ORTHO05D007672 8.1e-16 87.8 142 40.1
arahy.Tifrunner.gnm1.ann1.WJC6IK Arachis hypogaea HOM05D006065 ORTHO05D007672 1.1e-15 87.4 167 37.7
Gorai.004G158400 Gossypium raimondii HOM05D006065 ORTHO05D007672 1.4e-15 87.0 140 37.9
FAN03G2883 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.8e-15 86.7 133 42.1
Gohir.D08G152500 Gossypium hirsutum HOM05D006065 ORTHO05D007672 2.4e-15 86.3 140 37.1
Aqoxy7G00322 Aquilegia oxysepala HOM05D006065 ORTHO05D007672 4.0e-15 85.5 132 40.9
TWI59G0879 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 4.0e-15 85.5 140 39.3
Ca_07890_v3 Cicer arietinum L. HOM05D006065 ORTHO05D007672 1.2e-14 84.0 141 42.6
TPR.G37820 Trifolium pratense HOM05D006065 ORTHO05D007672 1.2e-14 84.0 141 41.8
GSVIVG01026900001 Vitis vinifera HOM05D006065 ORTHO05D007672 1.5e-14 83.6 127 42.5
FAN01G0390 Fragaria x ananassa HOM05D006065 ORTHO05D007672 2.0e-14 83.2 133 41.4
EL10Ac1g00426 Beta vulgaris HOM05D006065 ORTHO05D007672 2.6e-14 82.8 116 41.4
CDE06G0574 Ceratophyllum demersum HOM05D006065 ORTHO05D007672 2.6e-14 82.8 137 42.3
Duzib138G1923 Durio zibethinus HOM05D006065 ORTHO05D007672 3.4e-14 82.4 140 35.7
FvH4_7g14190 Fragaria vesca HOM05D006065 ORTHO05D007672 3.4e-14 82.4 133 41.4
FAN06G3027 Fragaria x ananassa HOM05D006065 ORTHO05D007672 3.4e-14 82.4 133 41.4
FAN10G0270 Fragaria x ananassa HOM05D006065 ORTHO05D007672 3.4e-14 82.4 132 42.4
AT4G00525 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 4.4e-14 82.0 146 38.4
FAN06G3847 Fragaria x ananassa HOM05D006065 ORTHO05D007672 4.4e-14 82.0 133 41.4
Thhalv10029047m.g Eutrema salsugineum HOM05D006065 ORTHO05D007672 7.6e-14 81.3 137 38.0
Rhsim07G0016100 Rhododendron simsii HOM05D006065 ORTHO05D007672 7.6e-14 81.3 218 34.4
Sp6g00560 Schrenkiella parvula HOM05D006065 ORTHO05D007672 9.9e-14 80.9 154 39.0
PGR031G0376 Punica granatum HOM05D006065 ORTHO05D007672 1.3e-13 80.5 144 36.8
Psat3g110920 Pisum sativum HOM05D006065 ORTHO05D007672 1.7e-13 80.1 141 39.0
Ah.05g180670 Amaranthus hybridus HOM05D006065 ORTHO05D007672 6.4e-13 78.2 126 38.1
Manes.01G258100 Manihot esculenta HOM05D006065 ORTHO05D007672 6.4e-13 78.2 138 39.1
PSO832G3783 Papaver somniferum HOM05D006065 ORTHO05D007672 1.1e-12 77.4 141 37.6
Carub.0006s3674 Capsella rubella HOM05D006065 ORTHO05D007672 1.4e-12 77.0 148 35.8
Sed0021596 Sechium edule HOM05D006065 ORTHO05D007672 1.4e-12 77.0 153 41.2
HPP92_008504 Vanilla planifolia HOM05D006065 ORTHO05D007672 5.4e-12 75.1 142 37.3
PSO210G7571 Papaver somniferum HOM05D006065 ORTHO05D007672 9.3e-12 74.3 157 36.3
TWI14G0791 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 9.3e-12 74.3 140 38.6
A03p32140 Brassica napus HOM05D006065 ORTHO05D007672 3.5e-11 72.4 142 38.0
BcaC01g06870 Brassica carinata HOM05D006065 ORTHO05D007672 4.6e-11 72.0 141 37.6
BcaNung05355 Brassica carinata HOM05D006065 ORTHO05D007672 4.6e-11 72.0 141 37.6
BolC3t16187H Brassica oleracea HOM05D006065 ORTHO05D007672 4.6e-11 72.0 141 37.6
BraA03t12384Z Brassica rapa HOM05D006065 ORTHO05D007672 4.6e-11 72.0 142 38.0
AL6G52950 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 6.0e-11 71.6 137 37.2
Gohir.A11G088300 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.7e-10 70.1 140 35.0
Gohir.D11G092600 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.7e-10 70.1 140 35.0
MD07G1138600 Malus domestica HOM05D006065 ORTHO05D007672 1.6e-08 63.5 132 35.6
AL1G10640 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 2.4e-07 59.7 149 33.6
Nn1g01520 Nelumbo nucifera HOM05D006065 ORTHO05D007672 3.1e-07 59.3 51 64.7
CSS0003041 Camellia sinensis var. sinensis HOM05D006065 ORTHO05D007672 4.0e-07 58.9 183 30.1
SalBow5G5348 Salvia bowleyana HOM05D006065 ORTHO05D351297 4.0e-07 58.9 146 37.0
AT1G01715 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 9.0e-07 57.8 148 33.1
SEGI_06767 Sequoiadendron giganteum HOM05D006065 ORTHO05D007672 1.2e-06 57.4 156 29.5
Eucgr.D02286 Eucalyptus grandis HOM05D006065 ORTHO05D007672 1.5e-06 57.0 140 32.9
Solyc01g094510.2 Solanum lycopersicum HOM05D006065 ORTHO05D007672 2.0e-06 56.6 108 38.9
CARHR248680 Cardamine hirsuta HOM05D006065 ORTHO05D007672 5.8e-06 55.1 146 32.9


User provided reference genes

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