Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 3.3e-144 515.0 259 100.0
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 6.2e-106 387.9 205 93.7
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 2.4e-89 332.8 259 66.4
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 3.5e-77 292.4 249 57.0
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.0e-36 157.9 214 43.5
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 1.4e-36 157.5 215 42.3
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 3.3e-35 152.9 209 41.6
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.7e-34 150.6 212 42.9
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.8e-34 149.8 215 42.3
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 5.3e-33 145.6 215 40.5
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 1.2e-32 144.4 209 40.7
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.2e-31 140.2 208 42.3
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.2e-31 140.2 208 42.3
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 6.5e-31 138.7 212 39.2
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 1.9e-30 137.1 206 38.8
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 4.2e-30 136.0 207 37.7
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 7.2e-30 135.2 211 39.3
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 1.6e-29 134.0 211 39.8
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-29 133.7 214 40.2
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 4.7e-29 132.5 214 40.7
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 6.1e-29 132.1 209 37.3
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 1.0e-28 131.3 176 44.3
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 1.8e-28 130.6 218 39.0
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 2.3e-28 130.2 209 37.3
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 3.0e-28 129.8 219 37.0
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 8.8e-28 128.3 205 37.1
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.8e-28 128.3 213 39.4
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 1.5e-27 127.5 210 38.1
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 2.6e-27 126.7 184 40.8
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.7e-27 124.8 178 38.8
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 2.2e-26 123.6 184 39.7
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 2.2e-26 123.6 210 38.6
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.2e-26 123.6 183 41.0
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 2.8e-26 123.2 206 35.9
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 4.8e-26 122.5 217 34.6
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.8e-26 122.5 180 37.8
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 4.8e-26 122.5 169 39.6
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 8.3e-26 121.7 206 36.4
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 8.3e-26 121.7 158 43.7
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 8.3e-26 121.7 158 43.7
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.4e-25 120.2 214 36.0
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 2.4e-25 120.2 120 50.8
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 2.4e-25 120.2 162 43.8
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.1e-25 119.8 180 36.7
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 3.1e-25 119.8 187 39.6
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 4.1e-25 119.4 218 35.8
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 4.1e-25 119.4 120 51.7
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 4.1e-25 119.4 120 51.7
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.3e-25 119.0 214 35.0
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 7.0e-25 118.6 120 50.8
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 7.0e-25 118.6 120 50.8
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.2e-24 117.9 205 35.1
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 1.6e-24 117.5 207 35.7
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.6e-24 117.5 219 34.7
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.6e-24 117.5 184 40.8
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.7e-24 116.7 162 42.0
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 3.5e-24 116.3 187 40.1
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 4.5e-24 115.9 148 43.9
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.5e-24 115.9 214 36.0
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.0e-23 114.8 209 34.9
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 1.0e-23 114.8 120 49.2
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.3e-23 114.4 205 34.1
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 1.3e-23 114.4 207 34.3
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 1.7e-23 114.0 217 32.7
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 3.8e-23 112.8 180 37.8
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 3.8e-23 112.8 204 36.3
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 6.5e-23 112.1 206 32.0
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 6.5e-23 112.1 206 32.0
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.5e-23 112.1 215 34.4
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.5e-23 112.1 217 35.5
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 8.5e-23 111.7 206 31.1
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.1e-22 111.3 213 35.2
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.1e-22 111.3 167 37.1
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 1.9e-22 110.5 181 34.8
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.9e-22 110.5 242 32.6
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.9e-22 110.5 201 36.3
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 4.2e-22 109.4 206 35.9
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 9.4e-22 108.2 216 35.6
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 3.6e-21 106.3 119 45.4
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 3.6e-21 106.3 119 45.4
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 6.1e-21 105.5 119 44.5
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.0e-21 105.1 212 35.8
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 1.8e-20 104.0 119 46.2
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 6.8e-20 102.1 180 33.9
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 6.8e-20 102.1 180 33.9
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.6e-19 100.1 185 35.1
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.5e-19 98.6 138 41.3
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.3e-18 97.8 104 45.2
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 2.8e-18 96.7 209 34.0
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.7e-18 96.3 165 37.6
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 8.3e-18 95.1 117 42.7
EL10Ac6g13635 Beta vulgaris HOM05D004865 ORTHO05D005949 8.3e-18 95.1 213 31.5
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.3e-18 95.1 159 37.1
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.8e-17 94.0 216 31.0
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 3.1e-17 93.2 194 32.5
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 4.1e-17 92.8 103 41.7
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.4e-17 92.4 145 35.9
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 7.0e-17 92.0 143 38.5
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 9.1e-17 91.7 163 31.9
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.6e-16 90.9 207 33.8
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.0e-16 90.5 214 32.7
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.0e-16 90.5 208 30.8
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.0e-16 90.5 208 30.8
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.3e-15 87.8 185 34.6
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 2.3e-15 87.0 205 31.7
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 2.3e-15 87.0 194 30.9
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 3.8e-15 86.3 170 35.3
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.8e-15 86.3 111 42.3
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 5.0e-15 85.9 194 33.0
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 6.6e-15 85.5 214 33.2
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 1.1e-14 84.7 217 32.3
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 1.1e-14 84.7 217 32.3
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 3.3e-14 83.2 216 31.9
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 4.2e-14 82.8 141 34.0
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 4.2e-14 82.8 229 29.3
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 9.5e-14 81.6 85 47.1
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 2.1e-13 80.5 203 30.0
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 3.6e-13 79.7 205 32.7
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 4.7e-13 79.3 161 31.1
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.4e-12 77.8 208 29.3
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 1.4e-12 77.8 206 31.6
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 2.3e-12 77.0 214 33.2
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.0e-12 76.3 129 33.3
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.9e-12 75.1 112 36.6
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 1.2e-11 74.7 66 51.5
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 2.0e-11 73.9 108 39.8
AUR62012550 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.8e-10 70.1 213 28.6
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 3.7e-10 69.7 211 26.5
MELO3C031484.2 Cucumis melo HOM05D004865 ORTHO05D005949 6.3e-10 68.9 213 31.9
Prupe.2G116900 Prunus persica HOM05D004865 ORTHO05D005949 2.4e-09 67.0 197 28.9
Sc24g0002640 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.4e-09 67.0 149 32.2
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.2e-09 66.6 96 39.6
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 4.1e-09 66.2 197 28.9
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 4.1e-09 66.2 138 34.1
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 4.1e-09 66.2 138 34.1
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 5.4e-09 65.9 215 29.8
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.2e-08 64.7 143 34.3
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.6e-08 64.3 204 29.9
AUR62035115 Chenopodium quinoa HOM05D009434 ORTHO05D011504 3.5e-08 63.2 123 29.3
AUR62035116 Chenopodium quinoa HOM05D009434 ORTHO05D011504 3.5e-08 63.2 123 29.3
AUR62035119 Chenopodium quinoa HOM05D009434 ORTHO05D011504 3.5e-08 63.2 123 29.3
AUR62039295 Chenopodium quinoa HOM05D009434 ORTHO05D011504 3.5e-08 63.2 123 29.3
AUR62039296 Chenopodium quinoa HOM05D009434 ORTHO05D011504 3.5e-08 63.2 123 29.3
AUR62039299 Chenopodium quinoa HOM05D009434 ORTHO05D011504 3.5e-08 63.2 123 29.3
AUR62039300 Chenopodium quinoa HOM05D009434 ORTHO05D011504 3.5e-08 63.2 123 29.3
AUR62044534 Chenopodium quinoa HOM05D009434 ORTHO05D011504 3.5e-08 63.2 123 29.3
AUR62044531 Chenopodium quinoa HOM05D009434 ORTHO05D011504 4.5e-08 62.8 116 30.2
HanXRQChr03g0085641 Helianthus annuus HOM05D004865 ORTHO05D005949 1.7e-07 60.8 136 31.6
AUR62016123 Chenopodium quinoa HOM05D009434 ORTHO05D011504 2.9e-07 60.1 115 26.1
ClCG11G011710 Citrullus lanatus HOM05D004865 ORTHO05D034719 2.5e-06 57.0 216 27.8
Sc05g0005670 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.6e-06 55.8 75 42.7


User provided reference genes

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