Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 0.0e+00 1358.2 658 100.0
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.3e-290 1001.9 664 74.8
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.3e-290 1001.9 664 74.8
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.4e-263 912.9 665 68.6
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.8e-250 869.4 664 66.7
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 8.6e-237 823.9 656 64.9
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 4.0e-234 815.1 663 62.7
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 8.9e-234 813.9 697 60.3
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 2.6e-233 812.4 669 62.8
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 7.5e-233 810.8 663 62.7
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.9e-232 808.9 663 62.6
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 1.6e-230 803.1 660 61.7
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.9e-228 796.2 671 61.5
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 2.5e-228 795.8 665 61.4
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 5.6e-228 794.7 666 61.6
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 2.8e-227 792.3 665 61.2
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 8.9e-226 787.3 678 61.5
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 1.5e-225 786.6 678 61.5
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 5.8e-225 784.6 667 60.6
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 1.7e-224 783.1 675 60.4
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 8.3e-224 780.8 664 59.5
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 1.9e-223 779.6 675 60.9
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 2.4e-223 779.2 676 60.4
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 9.2e-223 777.3 665 59.4
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.2e-222 776.9 665 59.4
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.6e-222 776.5 665 59.4
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 6.0e-222 774.6 665 59.2
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.3e-221 773.5 665 59.2
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.3e-221 773.5 666 59.3
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 1.7e-221 773.1 665 60.0
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.7e-221 773.1 665 60.2
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 3.0e-221 772.3 660 61.8
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.0e-221 772.3 665 60.2
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 3.0e-221 772.3 683 61.1
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 5.0e-221 771.5 661 62.2
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 5.0e-221 771.5 664 60.7
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 6.6e-221 771.2 681 58.9
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 3.3e-220 768.8 659 62.4
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 4.3e-220 768.5 670 59.7
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 5.6e-220 768.1 663 60.6
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.2e-219 766.9 665 58.8
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.2e-219 766.9 664 59.9
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 2.1e-219 766.1 614 63.2
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 4.7e-219 765.0 677 57.9
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 6.2e-219 764.6 672 59.4
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 1.8e-218 763.1 661 60.5
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 1.8e-218 763.1 668 59.4
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 8.9e-218 760.8 683 60.0
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 9.8e-217 757.3 658 58.7
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.7e-216 756.5 562 67.1
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 3.7e-216 755.4 668 59.6
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 6.4e-216 754.6 671 59.2
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 8.3e-216 754.2 678 58.1
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 3.2e-215 752.3 667 57.9
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 4.1e-215 751.9 563 65.7
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 4.1e-215 751.9 667 57.9
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 5.4e-215 751.5 683 58.0
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 5.4e-215 751.5 562 65.8
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 5.4e-215 751.5 666 59.3
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 1.2e-214 750.4 622 60.8
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 1.6e-214 750.0 535 68.8
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 2.7e-214 749.2 684 57.7
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 3.5e-214 748.8 665 57.6
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 1.5e-212 743.4 568 64.8
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 8.1e-211 737.6 559 65.5
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 3.1e-210 735.7 677 57.9
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 3.1e-210 735.7 556 66.2
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 4.0e-210 735.3 556 66.0
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 8.9e-210 734.2 555 65.8
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 1.5e-209 733.4 560 65.5
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 2.0e-209 733.0 669 58.7
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 2.0e-209 733.0 670 58.7
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 2.2e-208 729.6 574 63.8
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 4.9e-208 728.4 646 59.1
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 6.4e-208 728.0 565 64.6
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 6.4e-208 728.0 669 59.0
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 7.1e-207 724.5 567 64.2
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 6.6e-205 718.0 661 57.3
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 1.6e-203 713.4 659 58.3
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 1.8e-202 709.9 617 60.3
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 6.8e-202 708.0 544 64.9
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 3.4e-201 705.7 617 60.0
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 7.6e-201 704.5 689 55.7
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 4.9e-200 701.8 623 57.1
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 8.4e-200 701.0 601 60.1
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 5.4e-199 698.4 670 56.7
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 1.2e-198 697.2 580 61.0
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 1.6e-198 696.8 620 60.6
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 2.1e-198 696.4 672 57.1
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 2.7e-198 696.0 673 56.9
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 7.8e-198 694.5 634 58.7
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 7.8e-198 694.5 666 57.5
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 6.6e-197 691.4 676 55.9
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 6.6e-197 691.4 676 55.9
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 6.6e-197 691.4 672 56.8
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 8.7e-197 691.0 680 55.9
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 2.5e-196 689.5 676 55.8
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 2.5e-196 689.5 584 60.6
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 7.3e-196 688.0 558 60.8
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 2.1e-195 686.4 564 60.1
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 4.8e-195 685.3 556 61.0
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 3.1e-194 682.6 665 54.9
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 1.6e-190 670.2 646 54.3
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 2.1e-190 669.8 668 52.4
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 2.1e-190 669.8 564 59.4
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 1.0e-189 667.5 551 60.1
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 8.7e-189 664.5 669 56.4
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 3.3e-188 662.5 669 56.2
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 3.3e-188 662.5 669 56.2
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 9.6e-188 661.0 562 58.4
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 3.6e-187 659.1 535 62.1
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 9.0e-186 654.4 505 64.8
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.1e-183 647.5 634 54.1
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 1.9e-183 646.7 664 53.3
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 5.5e-183 645.2 536 61.9
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 1.8e-181 640.2 672 54.8
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 9.6e-180 634.4 669 54.7
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 4.0e-178 629.0 428 73.4
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 2.3e-173 613.2 616 53.2
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 5.1e-173 612.1 421 72.2
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 8.4e-168 594.7 700 49.6
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 8.5e-160 568.2 556 54.1
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 1.4e-157 560.8 685 46.1
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 1.2e-150 537.7 656 47.7
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.1e-146 524.6 525 54.5
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 1.3e-144 517.7 520 56.0
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 3.8e-144 516.2 629 49.8
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 2.5e-135 486.9 554 48.9
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.5e-132 477.6 567 46.0
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.4e-117 427.9 391 55.0
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 6.8e-117 425.6 336 61.9
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 7.3e-111 405.6 389 52.4
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.1e-93 347.1 286 59.8
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 1.4e-74 285.0 348 50.6
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 4.8e-62 243.4 218 59.6
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 7.4e-55 219.5 396 38.1
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 4.6e-49 200.3 659 26.4
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 5.7e-39 166.8 158 51.3
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 1.3e-30 139.0 150 54.0
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 1.2e-28 132.5 163 45.4
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 1.0e-27 129.4 403 26.3
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 2.6e-23 114.8 76 75.0
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 3.1e-21 107.8 101 55.4
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 4.7e-17 94.0 215 36.3
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 3.4e-15 87.8 163 30.7
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 7.5e-15 86.7 91 52.7
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 1.5e-10 72.4 137 36.5


User provided reference genes

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