Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 1.9e-139 499.2 253 100.0
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 5.5e-67 258.5 214 64.0
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 4.8e-63 245.4 209 62.2
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 2.4e-62 243.0 209 62.7
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 2.0e-61 240.0 188 64.4
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 5.9e-61 238.4 209 61.2
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 1.2e-56 224.2 225 54.2
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 2.7e-53 213.0 213 53.1
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 3.5e-53 212.6 212 52.8
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 3.5e-53 212.6 211 53.6
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 1.5e-51 207.2 212 53.3
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 1.0e-49 201.1 207 48.3
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 1.4e-49 200.7 213 49.8
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 4.0e-49 199.1 173 58.4
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 6.8e-49 198.4 210 51.4
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 6.8e-49 198.4 222 51.8
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 6.8e-49 198.4 217 51.2
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 1.5e-48 197.2 211 49.3
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 3.4e-48 196.1 207 47.8
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 4.4e-48 195.7 213 48.8
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 7.5e-48 194.9 212 50.0
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 7.5e-48 194.9 207 45.9
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 1.7e-47 193.7 213 49.8
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 2.2e-47 193.4 213 49.8
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 3.7e-47 192.6 210 50.0
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 4.9e-47 192.2 216 44.4
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 6.3e-47 191.8 212 51.9
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 8.3e-47 191.4 211 49.8
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 1.1e-46 191.0 213 47.9
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 1.1e-46 191.0 219 52.5
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 1.1e-46 191.0 211 50.7
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 3.1e-46 189.5 212 48.1
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 3.1e-46 189.5 207 45.9
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 7.0e-46 188.3 209 50.7
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 1.2e-45 187.6 212 50.9
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 1.2e-45 187.6 207 45.9
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 2.7e-45 186.4 211 48.8
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.7e-45 186.4 214 50.5
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 2.7e-45 186.4 209 48.3
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 5.9e-45 185.3 211 49.3
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 1.7e-44 183.7 216 47.2
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 2.9e-44 183.0 210 48.1
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 2.9e-44 183.0 211 48.8
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 3.8e-44 182.6 209 49.8
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 3.8e-44 182.6 217 49.3
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 8.6e-44 181.4 211 47.4
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 8.6e-44 181.4 208 44.7
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 8.6e-44 181.4 209 48.8
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 1.5e-43 180.6 212 48.6
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 2.5e-43 179.9 212 47.6
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 3.3e-43 179.5 213 46.9
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 3.3e-43 179.5 213 49.3
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 3.3e-43 179.5 213 48.8
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 9.5e-43 177.9 211 46.4
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 9.5e-43 177.9 208 46.6
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 1.2e-42 177.6 231 46.3
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 1.2e-42 177.6 172 50.0
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.6e-42 177.2 164 56.7
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 2.8e-42 176.4 215 46.0
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 2.8e-42 176.4 211 45.5
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 4.7e-42 175.6 213 47.4
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 4.7e-42 175.6 179 48.0
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 6.1e-42 175.3 214 48.1
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 6.1e-42 175.3 211 46.9
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.0e-41 174.5 209 49.8
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 1.4e-41 174.1 216 44.4
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 2.3e-41 173.3 158 54.4
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 3.0e-41 172.9 204 45.6
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 4.0e-41 172.6 214 50.0
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 5.2e-41 172.2 214 48.1
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 1.5e-40 170.6 213 46.9
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 4.4e-40 169.1 212 44.8
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 7.5e-40 168.3 208 46.2
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 1.7e-39 167.2 167 50.9
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.7e-39 167.2 167 50.9
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 3.7e-39 166.0 213 46.0
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 8.3e-39 164.9 216 45.8
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.4e-38 164.1 212 44.8
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 1.4e-38 164.1 209 44.5
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 1.4e-38 164.1 212 45.3
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.8e-38 163.7 211 45.5
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 2.0e-37 160.2 143 56.6
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 1.3e-36 157.5 212 43.9
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 3.0e-36 156.4 166 50.6
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 3.3e-35 152.9 152 52.0
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 2.1e-34 150.2 156 53.2
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 2.8e-34 149.8 230 42.6
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 1.1e-33 147.9 297 35.0
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 1.1e-33 147.9 213 44.1
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 6.8e-33 145.2 182 47.8
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 1.5e-32 144.1 182 47.3
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 7.5e-32 141.7 135 54.8
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 2.9e-31 139.8 162 48.1
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 3.7e-31 139.4 135 54.1
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 9.2e-30 134.8 169 44.4
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 1.6e-29 134.0 159 45.3
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 4.6e-29 132.5 194 40.7
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 6.0e-29 132.1 164 41.5
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 1.3e-28 131.0 134 50.7
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 1.3e-28 131.0 134 47.0
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 1.7e-28 130.6 219 38.4
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 2.3e-28 130.2 135 53.3
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 2.3e-28 130.2 138 52.2
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 8.6e-28 128.3 194 40.2
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 2.5e-27 126.7 124 47.6
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 5.6e-27 125.6 212 37.7
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 9.5e-27 124.8 126 47.6
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 1.2e-26 124.4 216 38.9
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 2.8e-26 123.2 86 64.0
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 2.8e-26 123.2 135 51.9
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 6.2e-26 122.1 200 40.0
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 6.2e-26 122.1 128 50.8
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 1.1e-25 121.3 166 39.2
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 1.4e-25 120.9 115 49.6
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.4e-25 120.9 199 39.2
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 1.8e-25 120.6 176 42.0
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 1.8e-25 120.6 161 42.2
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 4.0e-25 119.4 154 44.2
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 5.2e-25 119.0 188 39.4
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 1.5e-24 117.5 208 36.5
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 1.5e-24 117.5 178 41.6
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 5.8e-24 115.5 152 43.4
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 7.5e-24 115.2 131 48.9
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 1.3e-23 114.4 127 42.5
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 1.3e-23 114.4 121 45.5
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.7e-23 114.0 169 40.2
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 1.7e-23 114.0 209 33.0
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 1.7e-23 114.0 177 40.7
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 2.2e-23 113.6 169 40.8
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 2.9e-23 113.2 166 39.2
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 4.9e-23 112.5 158 39.2
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 8.3e-23 111.7 179 39.7
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 5.4e-22 109.0 187 36.9
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 5.4e-22 109.0 110 46.4
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 7.1e-22 108.6 210 35.2
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 1.2e-21 107.8 166 38.0
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.2e-21 107.8 78 57.7
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 2.7e-21 106.7 79 62.0
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 7.8e-21 105.1 166 38.0
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 1.0e-20 104.8 114 41.2
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 6.6e-20 102.1 146 42.5
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 7.3e-19 98.6 85 52.9
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.6e-18 97.4 115 47.8
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 4.0e-17 92.8 138 41.3
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 4.0e-17 92.8 177 35.6
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 7.6e-16 88.6 124 37.9
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 6.4e-15 85.5 122 38.5
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 4.1e-14 82.8 64 57.8
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 4.1e-14 82.8 144 34.0
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 3.5e-13 79.7 121 37.2
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.1e-11 74.7 116 36.2
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 1.9e-11 73.9 101 37.6
FvH4_3g19550 Fragaria vesca HOM05D004603 ORTHO05D005244 2.1e-10 70.5 87 41.4
FAN11G0237 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.1e-10 70.5 87 41.4
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 2.1e-10 70.5 96 47.9
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 4.7e-10 69.3 100 36.0
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 6.2e-10 68.9 92 39.1
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.0e-09 66.2 236 29.2
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 1.7e-07 60.8 178 28.7
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 2.9e-07 60.1 80 46.2
Aa31LG2G13200 Aethionema arabicum HOM05D000404 ORTHO05D001765 6.4e-07 58.9 56 55.4
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 1.4e-06 57.8 112 31.2
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.4e-06 57.0 118 33.1


User provided reference genes

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