Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 1.4e-56 222.6 102 100.0
SGA_v2.0_scaffold118G32549 Striga asiatica HOM05D005657 ORTHO05D007104 1.4e-53 212.6 102 96.1
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 6.3e-30 134.0 98 69.4
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 3.3e-10 68.6 35 82.9
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 3.3e-10 68.6 31 96.8
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 5.6e-10 67.8 41 73.2
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 5.6e-10 67.8 33 87.9
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 5.6e-10 67.8 40 77.5
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 7.3e-10 67.4 31 93.5
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 7.3e-10 67.4 32 90.6
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 7.3e-10 67.4 31 93.5
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 9.5e-10 67.0 31 93.5
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 9.5e-10 67.0 34 85.3
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 1.2e-09 66.6 31 93.5
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 1.6e-09 66.2 34 85.3
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.6e-09 66.2 31 93.5
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 2.1e-09 65.9 31 90.3
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 2.1e-09 65.9 31 90.3
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 2.1e-09 65.9 31 90.3
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 2.1e-09 65.9 31 90.3
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 2.1e-09 65.9 33 84.8
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 2.1e-09 65.9 31 90.3
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 2.8e-09 65.5 31 87.1
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 2.8e-09 65.5 31 90.3
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 2.8e-09 65.5 31 90.3
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 2.8e-09 65.5 50 64.0
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 2.8e-09 65.5 31 90.3
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 3.6e-09 65.1 31 90.3
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 3.6e-09 65.1 32 87.5
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 3.6e-09 65.1 55 60.0
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 3.6e-09 65.1 69 49.3
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 3.6e-09 65.1 69 49.3
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 3.6e-09 65.1 31 90.3
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 4.7e-09 64.7 36 75.0
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 4.7e-09 64.7 31 90.3
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 4.7e-09 64.7 34 85.3
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 6.2e-09 64.3 31 87.1
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 6.2e-09 64.3 31 90.3
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 6.2e-09 64.3 69 49.3
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 8.0e-09 63.9 31 87.1
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 8.0e-09 63.9 31 87.1
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 8.0e-09 63.9 31 87.1
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 8.0e-09 63.9 31 90.3
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 8.0e-09 63.9 31 87.1
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 1.1e-08 63.5 40 70.0
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 1.1e-08 63.5 31 83.9
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 1.4e-08 63.2 31 87.1
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 1.4e-08 63.2 32 84.4
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 1.4e-08 63.2 40 70.0
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 1.4e-08 63.2 31 87.1
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 1.4e-08 63.2 31 87.1
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 1.4e-08 63.2 31 87.1
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 1.8e-08 62.8 31 87.1
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 1.8e-08 62.8 31 83.9
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 1.8e-08 62.8 31 87.1
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 1.8e-08 62.8 31 83.9
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 2.3e-08 62.4 31 83.9
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 2.3e-08 62.4 32 78.1
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 3.1e-08 62.0 31 83.9
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 3.1e-08 62.0 31 83.9
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 3.1e-08 62.0 31 83.9
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 3.1e-08 62.0 31 83.9
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 4.0e-08 61.6 31 83.9
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 4.0e-08 61.6 31 80.6
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 4.0e-08 61.6 31 87.1
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 5.2e-08 61.2 31 83.9
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 5.2e-08 61.2 31 83.9
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 5.2e-08 61.2 31 83.9
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 5.2e-08 61.2 31 83.9
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 5.2e-08 61.2 31 83.9
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 5.2e-08 61.2 31 83.9
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 5.2e-08 61.2 31 83.9
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 5.2e-08 61.2 31 83.9
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 6.8e-08 60.8 31 83.9
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 6.8e-08 60.8 31 83.9
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 8.9e-08 60.5 31 83.9
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 8.9e-08 60.5 31 83.9
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 8.9e-08 60.5 31 83.9
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 8.9e-08 60.5 31 83.9
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 1.2e-07 60.1 31 80.6
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 1.2e-07 60.1 31 80.6
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.5e-07 59.7 31 80.6
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 1.5e-07 59.7 31 83.9
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 2.0e-07 59.3 31 80.6
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 2.0e-07 59.3 43 60.5
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 2.0e-07 59.3 31 80.6
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 2.6e-07 58.9 34 70.6
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 2.6e-07 58.9 31 83.9
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 2.6e-07 58.9 31 80.6
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 3.4e-07 58.5 31 80.6
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 3.4e-07 58.5 31 80.6
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 3.4e-07 58.5 31 80.6
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 3.4e-07 58.5 31 80.6
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 4.4e-07 58.2 31 80.6
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 4.4e-07 58.2 31 80.6
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 5.8e-07 57.8 31 80.6
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 7.5e-07 57.4 34 70.6
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 9.8e-07 57.0 31 80.6
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 9.8e-07 57.0 31 80.6
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 9.8e-07 57.0 31 80.6
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 9.8e-07 57.0 31 80.6
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 9.8e-07 57.0 31 80.6
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 9.8e-07 57.0 31 80.6
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 9.8e-07 57.0 31 80.6
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 9.8e-07 57.0 31 77.4
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 1.3e-06 56.6 31 80.6
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 1.3e-06 56.6 31 77.4
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 2.2e-06 55.8 31 77.4
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 2.2e-06 55.8 31 77.4
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 2.2e-06 55.8 31 77.4
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 6.4e-06 54.3 31 74.2
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 8.3e-06 53.9 40 65.0


User provided reference genes

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