Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 5.2e-196 687.6 358 100.0
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 5.1e-127 458.4 360 68.6
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 3.1e-116 422.5 363 62.8
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 9.1e-108 394.4 365 59.5
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 1.7e-106 390.2 362 59.7
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 6.5e-106 388.3 362 61.3
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 6.5e-106 388.3 360 60.0
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 6.5e-106 388.3 360 59.2
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 3.6e-104 382.5 360 58.9
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 1.4e-103 380.6 362 59.4
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 2.0e-102 376.7 362 58.8
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 3.4e-102 375.9 362 59.4
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 5.7e-102 375.2 362 58.6
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 2.2e-101 373.2 351 57.3
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.1e-100 370.9 355 60.0
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 9.1e-100 367.9 360 59.7
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 1.6e-99 367.1 413 51.6
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 2.0e-99 366.7 376 55.9
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 2.0e-99 366.7 361 56.5
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.0e-98 364.4 361 58.4
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.3e-98 364.0 358 57.0
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 1.3e-98 364.0 351 57.5
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 1.7e-98 363.6 363 57.6
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 2.9e-98 362.8 363 57.0
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 1.9e-97 360.1 362 57.2
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 1.9e-97 360.1 363 57.6
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 2.5e-97 359.8 363 58.1
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 3.3e-97 359.4 363 58.1
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 3.3e-97 359.4 363 58.1
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 2.1e-96 356.7 362 57.5
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 8.0e-96 354.8 363 57.6
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 3.0e-95 352.8 365 56.2
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 4.0e-95 352.4 360 53.3
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 5.2e-95 352.1 352 57.7
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 5.2e-95 352.1 354 55.4
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.2e-94 350.9 362 55.5
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.2e-94 350.9 359 54.9
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 1.3e-93 347.4 363 56.2
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 2.8e-93 346.3 356 56.5
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 4.9e-93 345.5 363 55.4
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 6.3e-93 345.1 357 55.5
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 1.1e-92 344.4 360 53.3
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 1.1e-92 344.4 363 56.5
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.4e-92 344.0 361 54.6
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 1.8e-92 343.6 360 53.9
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.4e-92 343.2 360 57.2
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 2.4e-92 343.2 313 57.8
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 4.1e-92 342.4 362 55.0
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 7.0e-92 341.7 359 57.4
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 2.0e-91 340.1 355 54.1
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 3.5e-91 339.3 355 53.5
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.0e-90 337.8 362 54.1
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 1.7e-90 337.0 354 54.5
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 8.6e-90 334.7 303 60.1
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 1.1e-89 334.3 363 53.4
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.5e-89 334.0 361 55.4
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 1.5e-89 334.0 365 53.4
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.9e-89 333.6 361 55.4
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.6e-88 330.5 305 58.4
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.6e-88 330.5 361 54.8
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 1.6e-88 330.5 301 59.1
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.1e-88 328.6 369 53.4
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 1.0e-87 327.8 356 54.8
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 3.0e-87 326.2 357 54.1
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 5.2e-87 325.5 293 60.1
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 8.9e-87 324.7 354 54.2
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 8.9e-87 324.7 357 53.8
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.2e-86 324.3 306 57.2
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 1.2e-86 324.3 362 51.4
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.5e-86 323.9 369 53.7
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 2.6e-86 323.2 365 53.4
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 4.4e-86 322.4 365 52.9
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 7.5e-86 321.6 351 51.3
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 7.5e-86 321.6 351 51.0
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 1.7e-85 320.5 363 52.6
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 2.2e-85 320.1 358 53.4
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 3.7e-85 319.3 353 53.5
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 6.4e-85 318.5 361 51.8
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 8.3e-85 318.2 360 51.9
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.1e-84 317.8 351 51.6
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 9.2e-84 314.7 358 52.5
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 1.6e-83 313.9 395 49.4
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.0e-83 313.5 363 50.1
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 4.6e-83 312.4 357 52.7
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 7.8e-83 311.6 351 50.1
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.0e-82 311.2 363 52.3
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 3.9e-82 309.3 358 53.6
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 1.5e-81 307.4 365 50.4
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 2.1e-80 303.5 356 51.1
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 2.1e-80 303.5 303 55.8
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 4.7e-80 302.4 375 49.3
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 4.7e-80 302.4 358 49.2
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 6.2e-80 302.0 357 48.2
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 1.1e-79 301.2 361 51.5
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 2.3e-79 300.1 359 50.7
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 2.3e-79 300.1 359 50.7
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 2.3e-79 300.1 359 50.7
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 4.0e-79 299.3 367 48.8
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 4.0e-79 299.3 367 48.8
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 8.9e-79 298.1 367 48.5
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 1.5e-78 297.4 371 50.1
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 2.0e-78 297.0 360 49.4
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 7.5e-78 295.0 358 51.1
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 9.8e-78 294.7 360 51.7
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 9.8e-78 294.7 360 51.7
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 1.7e-77 293.9 358 52.0
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 4.9e-77 292.4 361 49.0
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 9.2e-76 288.1 361 50.7
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 1.6e-75 287.3 356 49.7
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 3.5e-75 286.2 363 47.9
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 3.5e-75 286.2 335 51.0
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 4.6e-75 285.8 361 50.7
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 5.0e-74 282.3 350 48.9
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 5.0e-74 282.3 359 49.9
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 4.3e-73 279.3 360 50.6
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 7.3e-73 278.5 366 47.5
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 1.6e-72 277.3 275 61.1
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 1.6e-72 277.3 360 47.8
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 3.6e-72 276.2 358 45.5
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.3e-71 273.5 355 47.6
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 5.2e-71 272.3 303 50.5
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 2.0e-70 270.4 389 46.3
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 7.5e-70 268.5 351 47.9
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 1.7e-69 267.3 362 45.9
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 4.9e-69 265.8 351 47.9
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 1.4e-68 264.2 365 47.4
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 9.2e-68 261.5 243 57.2
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.2e-67 261.2 353 44.8
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 3.0e-66 256.5 341 45.7
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 8.6e-66 255.0 270 52.2
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 3.3e-65 253.1 361 45.4
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 4.3e-65 252.7 317 50.2
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 4.3e-65 252.7 358 43.6
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 2.8e-64 250.0 278 53.2
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.9e-60 237.3 358 43.3
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 5.6e-57 225.7 261 51.7
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 1.4e-55 221.1 336 44.0
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 2.4e-52 210.3 197 57.9
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 2.1e-51 207.2 281 44.5
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 4.6e-51 206.1 189 58.2
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 1.0e-50 204.9 179 59.8
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 3.6e-48 196.4 324 41.4
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.4e-47 193.7 349 39.5
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 1.2e-46 191.4 254 42.5
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 2.3e-42 177.2 239 48.1
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.3e-41 173.3 129 62.0
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.3e-40 171.4 209 54.5
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 2.1e-40 170.6 258 40.7
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.4e-39 167.2 209 55.5
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 4.0e-39 166.4 193 54.9
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 5.3e-39 166.0 331 35.3
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 9.0e-39 165.2 209 52.6
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.3e-37 161.4 124 61.3
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 3.5e-35 153.3 177 55.4
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 1.0e-34 151.8 129 59.7
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 5.8e-30 136.0 204 43.6
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 2.2e-29 134.0 126 51.6
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 4.9e-29 132.9 209 44.5
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 4.6e-27 126.3 140 50.0
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.0e-26 123.6 140 52.1
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 1.1e-25 121.7 98 61.2
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 3.1e-23 113.6 92 62.0
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.7e-22 109.0 132 50.0
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 7.4e-17 92.4 90 50.0
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 9.7e-17 92.0 244 33.6
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 9.4e-12 75.5 53 62.3
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.4e-10 71.6 163 33.1
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 2.6e-09 67.4 50 72.0
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 1.8e-07 61.2 52 61.5
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 7.0e-07 59.3 263 28.5
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.0e-06 57.8 76 46.1


User provided reference genes

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