Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 5.5e-144 514.2 250 100.0
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 5.0e-129 464.5 255 88.6
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 2.4e-123 445.7 241 88.8
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 5.4e-123 444.5 241 86.7
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 1.6e-119 433.0 254 80.3
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 6.1e-119 431.0 240 84.6
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 1.8e-115 419.5 247 79.4
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 3.2e-115 418.7 251 80.5
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 7.0e-115 417.5 251 80.1
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 4.6e-114 414.8 249 79.1
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 6.6e-113 411.0 251 78.5
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 4.3e-112 408.3 248 77.8
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 1.4e-110 403.3 241 79.3
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 6.8e-110 401.0 233 79.4
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 2.4e-107 392.5 235 78.3
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 3.2e-107 392.1 239 77.0
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 9.2e-107 390.6 233 79.0
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 9.2e-107 390.6 232 80.2
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 6.0e-106 387.9 256 73.8
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 1.0e-105 387.1 235 77.0
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 1.7e-105 386.3 235 79.6
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 1.7e-105 386.3 233 77.3
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 2.3e-105 386.0 238 76.5
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 2.3e-105 386.0 232 77.6
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 2.3e-105 386.0 253 74.7
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 2.3e-105 386.0 235 79.1
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 2.3e-105 386.0 250 74.0
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 2.3e-105 386.0 267 71.9
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 5.0e-105 384.8 237 76.4
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 5.0e-105 384.8 233 78.1
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 1.1e-104 383.6 235 76.2
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 1.5e-104 383.3 236 77.1
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 1.9e-104 382.9 233 80.3
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 2.5e-104 382.5 249 73.5
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 4.3e-104 381.7 251 73.3
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 1.2e-103 380.2 233 75.5
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 1.6e-103 379.8 233 76.0
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 1.6e-103 379.8 233 76.0
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 2.1e-103 379.4 249 72.3
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 2.1e-103 379.4 233 76.8
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 2.8e-103 379.0 233 77.7
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 2.8e-103 379.0 249 72.7
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 4.7e-103 378.3 246 73.2
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 8.1e-103 377.5 250 72.8
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 8.1e-103 377.5 234 75.2
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 8.1e-103 377.5 237 76.8
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 8.1e-103 377.5 233 77.3
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 1.4e-102 376.7 252 71.8
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 2.3e-102 375.9 236 76.3
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 3.1e-102 375.6 234 76.9
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 4.0e-102 375.2 251 70.9
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 4.0e-102 375.2 233 76.4
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 6.8e-102 374.4 233 77.7
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 1.2e-101 373.6 233 76.0
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 1.2e-101 373.6 243 74.1
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 1.5e-101 373.2 233 76.0
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 2.0e-101 372.9 228 77.2
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 2.6e-101 372.5 240 73.3
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 5.8e-101 371.3 233 74.7
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 5.8e-101 371.3 235 77.0
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 5.8e-101 371.3 262 69.1
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 9.8e-101 370.5 251 70.9
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 1.7e-100 369.8 234 74.4
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 2.9e-100 369.0 233 75.1
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 4.9e-100 368.2 233 74.2
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 6.4e-100 367.9 233 75.5
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 1.9e-99 366.3 233 73.8
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 9.2e-99 364.0 240 72.5
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 9.2e-99 364.0 238 71.4
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 1.2e-98 363.6 233 73.8
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.2e-98 363.6 248 68.1
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 1.6e-98 363.2 240 72.5
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 3.5e-98 362.1 233 73.0
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 4.6e-98 361.7 243 71.2
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 6.0e-98 361.3 248 70.2
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 7.8e-98 360.9 233 73.4
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 3.0e-97 359.0 249 69.5
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 3.0e-97 359.0 233 72.5
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 3.0e-97 359.0 258 69.8
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 3.0e-97 359.0 233 75.5
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 5.1e-97 358.2 238 70.6
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 1.5e-96 356.7 233 72.1
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 3.3e-96 355.5 235 72.8
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 5.6e-96 354.8 270 67.0
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 7.3e-96 354.4 235 71.5
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 2.1e-95 352.8 261 66.7
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 8.1e-95 350.9 238 69.7
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 1.8e-94 349.7 246 70.3
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 4.0e-94 348.6 250 68.0
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 2.0e-93 346.3 254 66.5
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 4.4e-93 345.1 243 66.3
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 2.5e-88 329.3 233 63.9
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 2.1e-87 326.2 233 63.1
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 2.8e-87 325.9 233 64.4
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 3.4e-85 318.9 234 66.2
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 9.9e-85 317.4 228 63.2
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 6.4e-84 314.7 249 60.2
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 1.1e-83 313.9 232 62.1
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 9.3e-83 310.8 233 67.4
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 1.2e-82 310.5 242 62.0
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 2.1e-82 309.7 233 60.5
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 1.0e-81 307.4 251 58.6
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 3.9e-81 305.4 219 63.5
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 6.6e-81 304.7 249 58.2
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 8.7e-81 304.3 219 62.1
Ciclev10024287m.g Citrus clementina HOM05D005296 ORTHO05D006452 1.9e-80 303.1 223 69.1
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 2.5e-80 302.8 254 63.4
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 2.5e-80 302.8 219 61.6
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 7.3e-80 301.2 228 61.4
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 2.8e-79 299.3 233 62.7
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 1.4e-78 297.0 218 60.6
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 2.0e-77 293.1 228 63.2
SGA_v2.0_scaffold146G36237 Striga asiatica HOM05D005296 ORTHO05D006452 1.3e-76 290.4 244 59.8
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 2.9e-76 289.3 247 59.9
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 2.4e-70 269.6 238 56.3
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 5.3e-70 268.5 231 61.5
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 1.2e-69 267.3 172 71.5
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 3.9e-65 252.3 254 53.9
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 2.5e-64 249.6 245 55.9
EL10Ac3g04942 Beta vulgaris HOM05D005296 ORTHO05D006452 7.4e-64 248.1 162 70.4
TPR.G22773 Trifolium pratense HOM05D005296 ORTHO05D006452 3.7e-63 245.7 184 59.2
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 4.8e-63 245.4 286 45.5
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 1.0e-60 237.7 231 56.3
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 1.4e-59 233.8 160 74.4
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 8.2e-55 218.0 145 71.7
FAN12G3138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.8e-54 216.9 187 58.3
Duzib212G0376 Durio zibethinus HOM05D005296 ORTHO05D006452 1.3e-52 210.7 196 56.6
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 5.0e-52 208.8 140 69.3
SGA_v2.0_scaffold227G43235 Striga asiatica HOM05D005296 ORTHO05D006452 3.0e-49 199.5 135 75.6
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 5.7e-48 195.3 288 40.3
MCO07G237 Micromonas commoda HOM05D005296 ORTHO05D006452 3.8e-44 182.6 243 45.7
Psat4g063800 Pisum sativum HOM05D005296 ORTHO05D006452 3.0e-41 172.9 120 61.7
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.2e-34 151.0 104 68.3
PGR031G0664 Punica granatum HOM05D005296 ORTHO05D006452 1.6e-34 150.6 267 40.8
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 2.1e-34 150.2 115 60.9
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 9.1e-30 134.8 138 55.8
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 9.1e-30 134.8 100 63.0
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 1.3e-28 131.0 119 55.5
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 2.7e-26 123.2 72 77.8
arahy.Tifrunner.gnm1.ann1.GS2NMQ Arachis hypogaea HOM05D005296 ORTHO05D006452 3.2e-19 99.8 58 79.3
Hma1.2p1_0180F.1_g079860 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.7e-15 87.4 73 63.0
Hma1.2p1_0718F.1_g208290 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 2.2e-15 87.0 94 48.9
Hma1.2p1_1570F.1_g291260 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 7.0e-14 82.0 53 73.6
arahy.Tifrunner.gnm1.ann1.GK6QEP Arachis hypogaea HOM05D005296 ORTHO05D006452 1.3e-12 77.8 74 50.0
arahy.Tifrunner.gnm1.ann1.3T38WV Arachis hypogaea HOM05D005296 ORTHO05D006452 3.0e-09 66.6 57 52.6


User provided reference genes

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