Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold119G32666 Striga asiatica HOM05D002174 ORTHO05D005447 1.5e-75 286.2 149 100.0
MSTRG.3864 Avicennia marina HOM05D002174 ORTHO05D005447 6.1e-58 227.6 180 68.3
Migut.G00088 Erythranthe guttata HOM05D002174 ORTHO05D005447 2.6e-56 222.2 180 66.7
SalBow5G1439 Salvia bowleyana HOM05D002174 ORTHO05D005447 2.9e-55 218.8 187 66.8
Migut.N00049 Erythranthe guttata HOM05D002174 ORTHO05D005447 1.8e-54 216.1 176 69.3
Cc03_g01000 Coffea canephora HOM05D002174 ORTHO05D005447 1.3e-52 209.9 179 67.0
Dinv44304 Davidia involucrata HOM05D002174 ORTHO05D005447 1.7e-52 209.5 180 66.7
Actinidia40361 Actinidia chinensis HOM05D002174 ORTHO05D005447 1.9e-51 206.1 177 65.0
DCAR_027009 Daucus carota HOM05D002174 ORTHO05D005447 3.3e-51 205.3 181 65.2
Haze_01275 Corylus avellana HOM05D002174 ORTHO05D005447 5.6e-51 204.5 180 62.8
Cpa.g.sc9.88 Carica papaya HOM05D002174 ORTHO05D005447 2.8e-50 202.2 177 62.7
Oeu033900.1 Olea europaea HOM05D002174 ORTHO05D005447 1.1e-49 200.3 174 64.9
Potri.010G142300 Populus trichocarpa HOM05D002174 ORTHO05D005447 1.1e-49 200.3 177 62.1
Cfa015340 Carpinus fangiana HOM05D002174 ORTHO05D005447 1.8e-49 199.5 180 61.1
QL06p011615 Quercus lobata HOM05D002174 ORTHO05D005447 2.3e-49 199.1 179 62.6
CSS0048523 Camellia sinensis var. sinensis HOM05D002174 ORTHO05D005447 3.1e-49 198.7 180 63.9
GSVIVG01035019001 Vitis vinifera HOM05D002174 ORTHO05D005447 4.0e-49 198.4 177 62.1
TAR365G0957 Trochodendron aralioides HOM05D002174 ORTHO05D005447 5.2e-49 198.0 177 63.3
arahy.Tifrunner.gnm1.ann1.XZ5MVW Arachis hypogaea HOM05D002174 ORTHO05D005447 6.8e-49 197.6 177 62.7
Potri.008G107200 Populus trichocarpa HOM05D002174 ORTHO05D005447 1.2e-48 196.8 177 62.7
Nitab4.5_0003294g0030 Nicotiana tabacum HOM05D002174 ORTHO05D005447 1.5e-48 196.4 177 65.5
CiPaw.01G139900 Carya illinoinensis HOM05D002174 ORTHO05D005447 2.0e-48 196.1 173 63.6
Nitab4.5_0001414g0010 Nicotiana tabacum HOM05D002174 ORTHO05D005447 4.4e-48 194.9 177 65.5
Prupe.1G122200 Prunus persica HOM05D002174 ORTHO05D005447 5.8e-48 194.5 181 63.5
Sabra10G0110000 Salix brachista HOM05D002174 ORTHO05D005447 7.5e-48 194.1 177 61.0
Aqoxy2G02777 Aquilegia oxysepala HOM05D002174 ORTHO05D005447 9.8e-48 193.7 181 60.8
Peaxi162Scf00065g00015 Petunia axillaris HOM05D002174 ORTHO05D005447 9.8e-48 193.7 181 63.0
Lj4g0009380 Lotus japonicus HOM05D002174 ORTHO05D005447 2.2e-47 192.6 177 61.0
TWI09G1315 Tripterygium wilfordii HOM05D002174 ORTHO05D005447 2.2e-47 192.6 179 61.5
Ciclev10006030m.g Citrus clementina HOM05D002174 ORTHO05D005447 2.9e-47 192.2 177 59.3
Sc25g0003390 Simmondsia chinensis HOM05D002174 ORTHO05D005447 3.7e-47 191.8 179 61.5
Solyc01g060070.3 Solanum lycopersicum HOM05D002174 ORTHO05D005447 3.7e-47 191.8 177 64.4
PGSC0003DMG400026692 Solanum tuberosum HOM05D002174 ORTHO05D005447 4.9e-47 191.4 177 63.8
Sabra08G0081100 Salix brachista HOM05D002174 ORTHO05D005447 6.4e-47 191.0 184 59.2
Sopen01g026250 Solanum pennellii HOM05D002174 ORTHO05D005447 6.4e-47 191.0 177 63.8
Ca_21451_v3 Cicer arietinum L. HOM05D002174 ORTHO05D005447 8.3e-47 190.7 179 60.3
Dinv15195 Davidia involucrata HOM05D002174 ORTHO05D005447 8.3e-47 190.7 162 66.0
Rhsim02G0005200 Rhododendron simsii HOM05D002174 ORTHO05D005447 1.9e-46 189.5 179 60.9
CAN.G197.4 Capsicum annuum HOM05D002174 ORTHO05D005447 3.2e-46 188.7 180 62.2
Eucgr.A00350 Eucalyptus grandis HOM05D002174 ORTHO05D005447 5.4e-46 188.0 182 61.5
Glyma.09G037800 Glycine max HOM05D002174 ORTHO05D005447 5.4e-46 188.0 179 58.7
MD13G1156400 Malus domestica HOM05D002174 ORTHO05D005447 1.6e-45 186.4 181 60.8
Manes.15G005500 Manihot esculenta HOM05D002174 ORTHO05D005447 1.6e-45 186.4 175 61.1
HPP92_001059 Vanilla planifolia HOM05D002174 ORTHO05D005447 1.6e-45 186.4 180 60.0
HanXRQChr13g0395301 Helianthus annuus HOM05D002174 ORTHO05D005447 2.0e-45 186.0 179 59.8
unitig_32.g10635 Utricularia gibba HOM05D002174 ORTHO05D005447 2.0e-45 186.0 180 58.3
MD16G1157300 Malus domestica HOM05D002174 ORTHO05D005447 2.7e-45 185.7 179 61.5
PSO210G4136 Papaver somniferum HOM05D002174 ORTHO05D005447 2.7e-45 185.7 180 57.2
Glyma.15G142900 Glycine max HOM05D002174 ORTHO05D005447 3.5e-45 185.3 175 58.9
Lalb_Chr13g0298411 Lupinus albus HOM05D002174 ORTHO05D005447 6.0e-45 184.5 177 58.8
Lj3C829T9 Lonicera japonica HOM05D002174 ORTHO05D005447 7.8e-45 184.1 180 58.3
PSO761G0631 Papaver somniferum HOM05D002174 ORTHO05D005447 7.8e-45 184.1 180 56.7
Thecc.04G297400 Theobroma cacao HOM05D002174 ORTHO05D005447 7.8e-45 184.1 178 58.4
Psat0s2066g0040 Pisum sativum HOM05D002174 ORTHO05D005447 1.0e-44 183.7 177 58.8
arahy.Tifrunner.gnm1.ann1.LMI6R7 Arachis hypogaea HOM05D002174 ORTHO05D005447 1.3e-44 183.3 182 59.9
Medtr4g121900 Medicago truncatula HOM05D002174 ORTHO05D005447 1.3e-44 183.3 179 57.5
HPP92_001148 Vanilla planifolia HOM05D002174 ORTHO05D005447 1.3e-44 183.3 180 59.4
Actinidia14262 Actinidia chinensis HOM05D002174 ORTHO05D005447 1.7e-44 183.0 176 59.7
Lalb_Chr07g0182101 Lupinus albus HOM05D002174 ORTHO05D005447 1.7e-44 183.0 181 59.1
Atru.chr4.2988 Acer truncatum HOM05D002174 ORTHO05D005447 2.3e-44 182.6 177 58.8
Nn3g21677 Nelumbo nucifera HOM05D002174 ORTHO05D005447 3.9e-44 181.8 176 60.2
arahy.Tifrunner.gnm1.ann1.UNW18Y Arachis hypogaea HOM05D002174 ORTHO05D005447 6.6e-44 181.0 182 59.9
Phvul.009G255100 Phaseolus vulgaris HOM05D002174 ORTHO05D005447 8.6e-44 180.6 179 58.1
Duzib151G0365 Durio zibethinus HOM05D002174 ORTHO05D005447 1.1e-43 180.3 178 57.3
Lsat_1_v5_gn_6_18361 Lactuca sativa HOM05D002174 ORTHO05D005447 9.5e-43 177.2 179 58.7
TPR.G16828 Trifolium pratense HOM05D002174 ORTHO05D005447 1.6e-42 176.4 206 51.5
VMungo1309G3089 Vigna mungo HOM05D002174 ORTHO05D005447 1.6e-42 176.4 179 56.4
RcHm_v2.0_Chr4g0424511 Rosa chinensis HOM05D002174 ORTHO05D005447 2.1e-42 176.0 167 59.3
Medtr2g034550 Medicago truncatula HOM05D002174 ORTHO05D005447 2.8e-42 175.6 179 54.2
MBI18_g31671_MAGBIO Magnolia biondii HOM05D002174 ORTHO05D005447 3.6e-42 175.3 181 58.0
PGR031G3841 Punica granatum HOM05D002174 ORTHO05D005447 2.3e-41 172.6 174 56.9
AUR62016131 Chenopodium quinoa HOM05D002174 ORTHO05D005447 2.0e-40 169.5 176 56.8
Lj6g0023775 Lotus japonicus HOM05D002174 ORTHO05D005447 2.0e-40 169.5 182 54.4
Actinidia15593 Actinidia chinensis HOM05D002174 ORTHO05D005447 3.4e-40 168.7 177 56.5
EL10Ac3g05462 Beta vulgaris HOM05D002174 ORTHO05D005447 4.4e-40 168.3 179 53.6
THA.LOC104820299 Tarenaya hassleriana HOM05D002174 ORTHO05D005447 5.8e-40 167.9 175 54.3
Glyma.07G241400 Glycine max HOM05D002174 ORTHO05D005447 1.3e-39 166.8 179 54.7
Psat3g002000 Pisum sativum HOM05D002174 ORTHO05D005447 1.7e-39 166.4 179 50.8
Gohir.A09G235200 Gossypium hirsutum HOM05D002174 ORTHO05D005447 2.2e-39 166.0 178 53.4
Lsat_1_v5_gn_6_114360 Lactuca sativa HOM05D002174 ORTHO05D005447 2.2e-39 166.0 177 58.8
Ca_01872_v3 Cicer arietinum L. HOM05D002174 ORTHO05D005447 3.7e-39 165.2 179 52.5
AUR62041404 Chenopodium quinoa HOM05D002174 ORTHO05D005447 6.4e-39 164.5 183 56.8
Gohir.D09G236000 Gossypium hirsutum HOM05D002174 ORTHO05D005447 8.3e-39 164.1 178 52.8
Gorai.006G259100 Gossypium raimondii HOM05D002174 ORTHO05D005447 1.4e-38 163.3 178 52.8
A01p21400 Brassica napus HOM05D002174 ORTHO05D005447 3.2e-38 162.2 174 50.6
BraA01t02045Z Brassica rapa HOM05D002174 ORTHO05D005447 3.2e-38 162.2 174 50.6
BcaC09g50313 Brassica carinata HOM05D002174 ORTHO05D005447 4.1e-38 161.8 174 50.6
C01p26740 Brassica napus HOM05D002174 ORTHO05D005447 4.1e-38 161.8 174 50.6
Sp7g14670 Schrenkiella parvula HOM05D002174 ORTHO05D005447 4.1e-38 161.8 174 50.6
FvH4_4g19460 Fragaria vesca HOM05D002174 ORTHO05D005447 7.1e-38 161.0 168 57.7
ECA233G3490 Erigeron canadensis HOM05D002174 ORTHO05D005447 1.2e-37 160.2 181 55.8
FAN12G1286 Fragaria x ananassa HOM05D002174 ORTHO05D005447 1.2e-37 160.2 167 57.5
Aa31LG10G5960 Aethionema arabicum HOM05D002174 ORTHO05D005447 1.6e-37 159.8 173 49.7
BcaB04g18368 Brassica carinata HOM05D002174 ORTHO05D005447 6.0e-37 157.9 174 51.1
HanXRQChr05g0145771 Helianthus annuus HOM05D002174 ORTHO05D005447 6.0e-37 157.9 180 55.0
BolC1t02615H Brassica oleracea HOM05D002174 ORTHO05D005447 1.3e-36 156.8 174 49.4
AL7G38950 Arabidopsis lyrata HOM05D002174 ORTHO05D005447 1.7e-36 156.4 174 51.1
AT4G16160 Arabidopsis thaliana HOM05D002174 ORTHO05D005447 5.1e-36 154.8 174 50.6
Os03g0305600 Oryza sativa ssp. japonica HOM05D002174 ORTHO05D005447 5.1e-36 154.8 179 49.7
Carub.0007s2539 Capsella rubella HOM05D002174 ORTHO05D005447 6.6e-36 154.5 174 51.1
ECA246G2588 Erigeron canadensis HOM05D002174 ORTHO05D005447 3.3e-35 152.1 173 52.6
CARHR222530 Cardamine hirsuta HOM05D002174 ORTHO05D005447 5.6e-35 151.4 178 49.4
Thhalv10026380m.g Eutrema salsugineum HOM05D002174 ORTHO05D005447 1.2e-34 150.2 174 49.4
THA.LOC104802605 Tarenaya hassleriana HOM05D002174 ORTHO05D005447 2.1e-34 149.4 173 50.9
vmacro15190 Vaccinium macrocarpon HOM05D002174 ORTHO05D005447 3.6e-34 148.7 235 43.4
BcaC07g37960 Brassica carinata HOM05D002174 ORTHO05D005447 1.1e-33 147.1 174 50.0
CDE01G0513 Ceratophyllum demersum HOM05D002174 ORTHO05D005447 3.1e-33 145.6 175 49.1
arahy.Tifrunner.gnm1.ann1.T3PDCV Arachis hypogaea HOM05D002174 ORTHO05D005447 6.8e-33 144.4 106 68.9
Sed0011045 Sechium edule HOM05D002174 ORTHO05D005447 6.8e-33 144.4 181 47.0
FAN07G2201 Fragaria x ananassa HOM05D002174 ORTHO05D005447 1.2e-32 143.7 190 49.5
CsaV3_6G022380 Cucumis sativus L. HOM05D002174 ORTHO05D005447 1.5e-32 143.3 181 47.0
Oeu016484.2 Olea europaea HOM05D002174 ORTHO05D005447 2.6e-32 142.5 137 60.6
Zm00001eb014550 Zea mays HOM05D002174 ORTHO05D005447 5.8e-32 141.4 183 48.6
COL.COLO4_34650 Corchorus olitorius HOM05D002174 ORTHO05D005447 9.9e-32 140.6 178 50.6
ClCG06G004650 Citrullus lanatus HOM05D002174 ORTHO05D005447 1.4e-30 136.7 215 41.4
Gohir.A10G171200 Gossypium hirsutum HOM05D002174 ORTHO05D005447 1.4e-30 136.7 176 48.3
CANSAT78G0160 Cannabis sativa HOM05D002174 ORTHO05D005447 4.1e-30 135.2 119 57.1
Gorai.011G199300 Gossypium raimondii HOM05D002174 ORTHO05D005447 6.0e-29 131.3 173 46.8
Gohir.D10G178300 Gossypium hirsutum HOM05D002174 ORTHO05D005447 7.8e-29 131.0 173 46.8
Rhsim04G0234100 Rhododendron simsii HOM05D002174 ORTHO05D005447 8.7e-28 127.5 178 46.1
DCAR_027011 Daucus carota HOM05D002174 ORTHO05D005447 3.3e-27 125.6 89 75.3
BraA08t33218Z Brassica rapa HOM05D002174 ORTHO05D005447 4.3e-27 125.2 174 44.8
Zm00001eb130200 Zea mays HOM05D002174 ORTHO05D005447 4.3e-27 125.2 178 43.3
SEGI_36733 Sequoiadendron giganteum HOM05D002174 ORTHO05D005447 7.3e-27 124.4 181 40.3
A03p49630 Brassica napus HOM05D002174 ORTHO05D005447 1.2e-26 123.6 171 45.6
A08p12370 Brassica napus HOM05D002174 ORTHO05D005447 1.2e-26 123.6 174 44.3
BraA03t14062Z Brassica rapa HOM05D002174 ORTHO05D005447 1.2e-26 123.6 171 45.6
ATR0707G001 Amborella trichopoda HOM05D002174 ORTHO05D005447 3.6e-26 122.1 143 53.1
BcaC06g33460 Brassica carinata HOM05D002174 ORTHO05D005447 4.7e-26 121.7 171 46.2
C07p47700 Brassica napus HOM05D002174 ORTHO05D005447 4.7e-26 121.7 171 46.2
Os01g0303300 Oryza sativa ssp. japonica HOM05D002174 ORTHO05D005447 8.1e-26 120.9 180 41.7
BcaC06g32992 Brassica carinata HOM05D002174 ORTHO05D005447 1.8e-25 119.8 171 44.4
TPR.G139 Trifolium pratense HOM05D002174 ORTHO05D005447 2.4e-25 119.4 115 53.9
MELO3C021274.2 Cucumis melo HOM05D002174 ORTHO05D005447 1.3e-23 113.6 110 53.6
SalBow8G1617 Salvia bowleyana HOM05D002174 ORTHO05D005447 6.4e-23 111.3 156 42.9
BolC7t45295H Brassica oleracea HOM05D002174 ORTHO05D005447 7.8e-21 104.4 153 45.8
SalBow8G1198 Salvia bowleyana HOM05D002174 ORTHO05D005447 3.0e-20 102.4 156 42.3
FAN23G0566 Fragaria x ananassa HOM05D002174 ORTHO05D005447 1.9e-19 99.8 110 55.5
Lalb_Chr06g0165391 Lupinus albus HOM05D002174 ORTHO05D005447 3.6e-18 95.5 124 48.4
Lj6A689T50 Lonicera japonica HOM05D002174 ORTHO05D005447 1.4e-17 93.6 74 64.9
TAR636G3310 Trochodendron aralioides HOM05D002174 ORTHO05D005447 1.4e-17 93.6 134 48.5
CSS0046628 Camellia sinensis var. sinensis HOM05D002174 ORTHO05D005447 2.6e-16 89.4 158 44.9
Lj6A689T51 Lonicera japonica HOM05D002174 ORTHO05D005447 4.2e-14 82.0 92 53.3
vmacro08063 Vaccinium macrocarpon HOM05D002174 ORTHO05D005447 1.0e-12 77.4 191 36.1
Mapoly0133s0032 Marchantia polymorpha HOM05D002174 ORTHO05D005941 5.1e-12 75.1 155 34.2
AagrBONN_evm.TU.Sc2ySwM_117.346 Anthoceros agrestis HOM05D001717 ORTHO05D007217 2.5e-11 72.8 154 31.8
SEGI_00670 Sequoiadendron giganteum HOM05D002174 ORTHO05D005941 3.3e-11 72.4 167 28.7
Cc03_g00990 Coffea canephora HOM05D002174 ORTHO05D005447 5.6e-11 71.6 40 92.5
Pp3c12_16880 Physcomitrium patens HOM05D002174 ORTHO05D005941 6.2e-10 68.2 154 30.5
Pp3c3_28050 Physcomitrium patens HOM05D002174 ORTHO05D005941 6.9e-09 64.7 154 31.2
Actinidia13365 Actinidia chinensis HOM05D002174 ORTHO05D005447 1.5e-08 63.5 40 67.5
BolC8t48340H Brassica oleracea HOM05D002174 ORTHO05D005447 1.5e-08 63.5 97 43.3
SMO358G0445 Selaginella moellendorffii HOM05D002174 ORTHO05D005941 1.5e-08 63.5 155 30.3
BcaC07g37957 Brassica carinata HOM05D002174 ORTHO05D005447 5.8e-08 61.6 90 42.2
Mapoly0097s0034 Marchantia polymorpha HOM05D002174 ORTHO05D005941 9.9e-08 60.8 154 29.9
BolC8t48339H Brassica oleracea HOM05D002174 ORTHO05D005447 2.2e-07 59.7 77 42.9
MBI04_g37587_MAGBIO Magnolia biondii HOM05D002174 ORTHO05D005447 2.9e-07 59.3 40 70.0
SMO147G0258 Selaginella moellendorffii HOM05D002174 ORTHO05D005941 3.8e-07 58.9 155 28.4
MBI15_g25005_MAGBIO Magnolia biondii HOM05D002174 ORTHO05D005447 2.4e-06 56.2 40 67.5


User provided reference genes

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