Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 9.1e-309 1062.8 546 100.0
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 1.8e-211 739.6 563 69.8
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 6.5e-206 721.1 544 69.3
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 1.1e-200 703.7 544 67.3
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 4.4e-186 655.2 548 62.2
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 2.8e-185 652.5 546 62.3
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 7.7e-183 644.4 546 61.5
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 1.7e-182 643.3 553 60.2
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 3.8e-182 642.1 562 60.7
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 6.5e-182 641.3 546 61.5
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 4.2e-181 638.6 569 59.9
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 2.1e-180 636.3 543 61.5
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 2.0e-178 629.8 543 61.9
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 2.6e-178 629.4 553 59.1
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 5.7e-178 628.2 553 59.9
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 1.7e-177 626.7 553 59.7
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 2.8e-177 625.9 553 59.7
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 1.6e-175 620.2 548 58.6
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 1.0e-174 617.5 553 58.6
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 1.0e-174 617.5 553 60.0
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 8.5e-174 614.4 544 59.6
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 8.5e-174 614.4 550 59.3
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.2e-172 610.5 572 56.8
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 2.1e-172 609.8 544 59.2
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 2.8e-172 609.4 543 59.5
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 1.0e-171 607.4 551 58.4
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 2.3e-171 606.3 545 58.9
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 6.8e-171 604.7 551 57.7
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 1.2e-170 604.0 545 59.6
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 1.5e-170 603.6 548 58.6
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 2.6e-170 602.8 548 57.7
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 1.7e-169 600.1 553 57.9
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 3.7e-169 599.0 543 58.7
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 3.7e-169 599.0 542 58.9
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 4.9e-169 598.6 544 57.2
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 1.8e-168 596.7 536 58.8
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 3.1e-168 595.9 546 59.3
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 1.2e-167 594.0 562 56.8
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 1.6e-167 593.6 544 58.3
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 4.5e-167 592.0 545 59.1
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 5.9e-167 591.7 544 57.2
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 5.9e-167 591.7 544 56.8
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 1.0e-166 590.9 544 56.8
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 1.3e-166 590.5 544 57.7
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 1.7e-166 590.1 562 57.1
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 9.5e-165 584.3 542 57.2
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 9.5e-165 584.3 566 56.2
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 1.2e-164 583.9 544 58.1
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 2.1e-164 583.2 544 58.6
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 2.1e-164 583.2 558 57.5
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 3.6e-164 582.4 544 57.4
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 8.0e-164 581.3 543 56.9
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 4.0e-163 578.9 542 57.4
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 1.5e-162 577.0 545 57.2
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 4.4e-162 575.5 557 56.4
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 5.7e-162 575.1 545 57.4
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 1.3e-161 573.9 562 55.7
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 2.9e-161 572.8 550 56.0
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 6.4e-161 571.6 546 56.6
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 7.0e-160 568.2 545 56.7
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 9.2e-160 567.8 550 56.0
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 9.2e-160 567.8 545 56.3
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 1.6e-159 567.0 590 53.6
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 2.3e-158 563.1 545 56.9
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 1.6e-156 557.0 554 54.9
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 2.1e-156 556.6 544 55.1
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 2.8e-156 556.2 540 55.2
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 8.0e-156 554.7 465 61.7
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 1.0e-155 554.3 540 55.0
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 1.4e-155 553.9 557 55.7
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 3.7e-153 545.8 604 51.8
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 1.4e-152 543.9 543 54.7
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 6.6e-150 535.0 547 53.7
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 7.3e-149 531.6 600 51.0
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 2.3e-147 526.6 575 51.7
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 2.0e-146 523.5 520 55.2
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 1.3e-145 520.8 547 53.2
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 5.4e-144 515.4 547 51.9
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 2.7e-143 513.1 514 53.5
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 3.0e-142 509.6 541 51.8
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 5.6e-141 505.4 547 51.0
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 1.6e-140 503.8 540 51.5
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 1.7e-137 493.8 461 56.8
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 4.1e-136 489.2 541 50.5
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 9.2e-136 488.0 561 49.9
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 2.7e-135 486.5 449 58.4
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.0e-134 484.6 427 59.7
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 2.3e-134 483.4 418 61.5
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 2.5e-133 479.9 423 60.5
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 3.1e-131 473.0 561 48.7
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 2.4e-120 436.8 570 46.5
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 3.9e-118 429.5 544 47.1
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 9.9e-114 414.8 544 46.5
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 6.7e-110 402.1 548 43.4
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.7e-105 387.5 551 42.5
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 2.5e-104 383.6 555 42.2
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 3.0e-102 376.7 354 55.4
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 8.7e-102 375.2 354 55.4
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 2.5e-101 373.6 448 46.7
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 3.6e-95 353.2 289 63.7
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 5.1e-86 322.8 290 59.3
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 8.2e-84 315.5 458 41.3
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.1e-83 315.1 572 37.4
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 1.1e-80 305.1 560 37.5
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 6.3e-68 262.7 287 53.3
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.0e-62 245.4 205 63.9
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 5.7e-61 239.6 379 40.9
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 6.3e-60 236.1 591 30.8
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 6.3e-60 236.1 225 57.3
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 1.2e-53 215.3 576 30.6
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 4.9e-52 209.9 172 62.8
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 9.2e-51 205.7 531 31.3
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 6.6e-49 199.5 169 56.2
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 4.7e-47 193.4 151 61.6
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 5.8e-37 159.8 140 58.6
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 3.7e-36 157.1 135 62.2
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 4.6e-34 150.2 129 62.8
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 5.6e-32 143.3 118 59.3
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 1.5e-24 118.6 116 56.0
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 2.2e-20 104.8 113 54.0
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 4.2e-19 100.5 99 57.6
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 3.5e-18 97.4 138 40.6
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 1.6e-15 88.6 87 58.6
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 1.2e-13 82.4 88 50.0
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 1.3e-12 79.0 71 56.3
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 6.4e-12 76.6 87 47.1
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 6.4e-12 76.6 87 47.1
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 3.2e-11 74.3 67 53.7
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 5.1e-09 67.0 119 37.8
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 3.6e-07 60.8 122 32.8
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.1e-06 59.3 310 26.1
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 1.1e-06 59.3 71 46.5
SMO009G0022 Selaginella moellendorffii HOM05D016773 ORTHO05D019668 1.1e-06 59.3 315 26.7
Eucgr.C04416 Eucalyptus grandis HOM05D000311 ORTHO05D000183 1.4e-06 58.9 256 28.9
Eucgr.E04263 Eucalyptus grandis HOM05D000311 ORTHO05D000183 1.4e-06 58.9 256 28.5
Lsat_1_v5_gn_3_107600 Lactuca sativa HOM05D000629 ORTHO05D013393 1.8e-06 58.5 71 43.7
Potri.005G007600 Populus trichocarpa HOM05D000311 ORTHO05D000183 9.0e-06 56.2 266 27.4


User provided reference genes

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