Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold118G32549 Striga asiatica HOM05D005657 ORTHO05D007104 2.3e-56 221.9 102 100.0
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 1.4e-53 212.6 102 96.1
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 3.8e-27 124.8 98 66.3
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 6.2e-09 64.3 41 70.7
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 6.2e-09 64.3 31 93.5
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 8.0e-09 63.9 40 75.0
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 8.0e-09 63.9 40 72.5
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 1.1e-08 63.5 40 75.0
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.1e-08 63.5 39 79.5
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 1.4e-08 63.2 31 90.3
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 1.4e-08 63.2 31 90.3
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 1.8e-08 62.8 40 72.5
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 1.8e-08 62.8 39 74.4
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 1.8e-08 62.8 31 90.3
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 1.8e-08 62.8 40 72.5
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 2.3e-08 62.4 39 74.4
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 2.3e-08 62.4 34 79.4
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 2.3e-08 62.4 33 81.8
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 2.3e-08 62.4 40 72.5
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 3.1e-08 62.0 32 84.4
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 4.0e-08 61.6 31 87.1
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 4.0e-08 61.6 31 87.1
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 4.0e-08 61.6 39 74.4
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 4.0e-08 61.6 39 74.4
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 4.0e-08 61.6 39 74.4
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 4.0e-08 61.6 31 87.1
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 4.0e-08 61.6 40 72.5
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 4.0e-08 61.6 39 74.4
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 4.0e-08 61.6 31 87.1
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 5.2e-08 61.2 36 72.2
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 5.2e-08 61.2 31 83.9
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 5.2e-08 61.2 31 87.1
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 5.2e-08 61.2 31 87.1
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 5.2e-08 61.2 69 47.8
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 5.2e-08 61.2 69 47.8
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 6.8e-08 60.8 31 87.1
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 6.8e-08 60.8 31 87.1
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 8.9e-08 60.5 40 67.5
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 8.9e-08 60.5 31 87.1
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 8.9e-08 60.5 33 78.8
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 8.9e-08 60.5 69 47.8
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 1.2e-07 60.1 39 69.2
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 1.2e-07 60.1 31 83.9
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 1.2e-07 60.1 31 87.1
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 1.5e-07 59.7 40 67.5
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 1.5e-07 59.7 40 70.0
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 1.5e-07 59.7 32 81.2
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 1.5e-07 59.7 31 83.9
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 2.0e-07 59.3 40 67.5
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 2.0e-07 59.3 40 67.5
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 2.0e-07 59.3 31 80.6
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 2.0e-07 59.3 40 67.5
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 2.6e-07 58.9 40 67.5
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 2.6e-07 58.9 31 83.9
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 2.6e-07 58.9 31 83.9
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 2.6e-07 58.9 46 56.5
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 2.6e-07 58.9 31 83.9
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 2.6e-07 58.9 31 83.9
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 3.4e-07 58.5 40 67.5
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 3.4e-07 58.5 31 83.9
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 3.4e-07 58.5 40 67.5
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 3.4e-07 58.5 31 83.9
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 3.4e-07 58.5 43 65.1
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 3.4e-07 58.5 31 80.6
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 4.4e-07 58.2 40 65.0
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 4.4e-07 58.2 40 67.5
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 4.4e-07 58.2 32 81.2
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 5.8e-07 57.8 40 67.5
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 5.8e-07 57.8 31 80.6
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 5.8e-07 57.8 31 80.6
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 5.8e-07 57.8 40 67.5
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 5.8e-07 57.8 31 80.6
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 5.8e-07 57.8 40 67.5
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 7.5e-07 57.4 31 77.4
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 7.5e-07 57.4 40 65.0
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 7.5e-07 57.4 32 75.0
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 9.8e-07 57.0 31 80.6
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 9.8e-07 57.0 31 80.6
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 9.8e-07 57.0 31 80.6
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 9.8e-07 57.0 31 80.6
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 9.8e-07 57.0 31 80.6
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 9.8e-07 57.0 43 65.1
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 9.8e-07 57.0 43 60.5
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 1.3e-06 56.6 40 65.0
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 1.7e-06 56.2 31 80.6
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 1.7e-06 56.2 39 69.2
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 1.7e-06 56.2 40 65.0
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 2.2e-06 55.8 40 65.0
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 2.9e-06 55.5 39 69.2
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 3.7e-06 55.1 39 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 4.9e-06 54.7 39 66.7
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 4.9e-06 54.7 34 67.6
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 4.9e-06 54.7 31 80.6
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 6.4e-06 54.3 31 77.4
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 6.4e-06 54.3 31 77.4
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 6.4e-06 54.3 31 77.4
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 8.3e-06 53.9 40 62.5


User provided reference genes

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