Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold118G32544 Striga asiatica HOM05D006246 ORTHO05D007932 1.7e-34 149.4 122 100.0
SGA_v2.0_scaffold24G10594 Striga asiatica HOM05D006246 ORTHO05D007932 1.7e-26 122.9 88 92.0
SalBow8G1996 Salvia bowleyana HOM05D006246 ORTHO05D007932 1.4e-23 113.2 120 72.5
Migut.C01275 Erythranthe guttata HOM05D006246 ORTHO05D007932 2.6e-22 109.0 89 87.6
Migut.N03358 Erythranthe guttata HOM05D006246 ORTHO05D007932 1.5e-17 93.2 47 89.4
Oeu021218.1 Olea europaea HOM05D006246 ORTHO05D007932 4.3e-17 91.7 46 91.3
BcaB02g10382 Brassica carinata HOM05D006246 ORTHO05D007932 6.9e-15 84.3 47 80.9
BcaC02g11223 Brassica carinata HOM05D006246 ORTHO05D007932 6.9e-15 84.3 47 80.9
BolC4t23440H Brassica oleracea HOM05D006246 ORTHO05D007932 6.9e-15 84.3 47 80.9
Thhalv10017462m.g Eutrema salsugineum HOM05D006246 ORTHO05D007932 6.9e-15 84.3 47 80.9
Aa31LG5G5660 Aethionema arabicum HOM05D006246 ORTHO05D007932 2.0e-14 82.8 47 78.7
SHI11488 Sapria himalayana HOM05D006246 ORTHO05D007932 2.6e-14 82.4 47 76.6
Sc23g0001630 Simmondsia chinensis HOM05D006246 ORTHO05D007932 2.6e-14 82.4 43 86.0
Carub.0004s1261 Capsella rubella HOM05D006246 ORTHO05D007932 3.4e-14 82.0 46 80.4
CARHR124920 Cardamine hirsuta HOM05D006246 ORTHO05D007932 3.4e-14 82.0 46 80.4
Sp4g13780 Schrenkiella parvula HOM05D006246 ORTHO05D007932 3.4e-14 82.0 47 78.7
Potri.005G067400 Populus trichocarpa HOM05D006246 ORTHO05D007932 4.5e-14 81.6 45 82.2
THA.LOC104826210 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 4.5e-14 81.6 44 84.1
HPP92_026670 Vanilla planifolia HOM05D006246 ORTHO05D007932 4.5e-14 81.6 45 77.8
Atru.chr13.2337 Acer truncatum HOM05D006246 ORTHO05D007932 5.8e-14 81.3 47 78.7
Atru.chr3.3065 Acer truncatum HOM05D006246 ORTHO05D007932 5.8e-14 81.3 47 78.7
Ciclev10002937m.g Citrus clementina HOM05D006246 ORTHO05D007932 5.8e-14 81.3 45 82.2
THA.LOC104800880 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 5.8e-14 81.3 44 81.8
Carub.0002s2226 Capsella rubella HOM05D006246 ORTHO05D007932 7.6e-14 80.9 47 76.6
Ca_00010_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 7.6e-14 80.9 44 86.4
Ca_00013_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 7.6e-14 80.9 44 86.4
DCAR_027686 Daucus carota HOM05D006246 ORTHO05D007932 7.6e-14 80.9 45 82.2
Gorai.009G310900 Gossypium raimondii HOM05D006246 ORTHO05D007932 7.6e-14 80.9 46 78.3
COL.COLO4_29720 Corchorus olitorius HOM05D006246 ORTHO05D007932 9.9e-14 80.5 43 88.4
A05p14300 Brassica napus HOM05D006246 ORTHO05D007932 1.3e-13 80.1 45 80.0
FvH4_5g18370 Fragaria vesca HOM05D006246 ORTHO05D007932 1.3e-13 80.1 44 81.8
FAN08G0289 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.3e-13 80.1 44 81.8
FAN13G0403 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.3e-13 80.1 44 81.8
FAN18G0928 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.3e-13 80.1 44 81.8
Duzib114G0955 Durio zibethinus HOM05D006246 ORTHO05D007932 1.7e-13 79.7 46 76.1
Glyma.04G204100 Glycine max HOM05D006246 ORTHO05D007932 1.7e-13 79.7 44 84.1
Glyma.06G161300 Glycine max HOM05D006246 ORTHO05D007932 1.7e-13 79.7 44 84.1
Medtr1g101240 Medicago truncatula HOM05D006246 ORTHO05D007932 1.7e-13 79.7 44 84.1
Phvul.009G159900 Phaseolus vulgaris HOM05D006246 ORTHO05D007932 1.7e-13 79.7 44 84.1
Psat6g198440 Pisum sativum HOM05D006246 ORTHO05D007932 1.7e-13 79.7 44 84.1
Sabra07G0084000 Salix brachista HOM05D006246 ORTHO05D007932 1.7e-13 79.7 42 85.7
TPR.G26967 Trifolium pratense HOM05D006246 ORTHO05D007932 1.7e-13 79.7 44 84.1
Duzib106G0997 Durio zibethinus HOM05D006246 ORTHO05D007932 2.9e-13 79.0 45 77.8
Potri.007G101900 Populus trichocarpa HOM05D006246 ORTHO05D007932 2.9e-13 79.0 43 83.7
Sp1g40730 Schrenkiella parvula HOM05D006246 ORTHO05D007932 2.9e-13 79.0 47 76.6
Thecc.03G070200 Theobroma cacao HOM05D006246 ORTHO05D007932 2.9e-13 79.0 45 77.8
TPR.G20664 Trifolium pratense HOM05D006246 ORTHO05D007932 2.9e-13 79.0 42 85.7
Gohir.A05G293700 Gossypium hirsutum HOM05D006246 ORTHO05D007932 3.8e-13 78.6 45 77.8
Gohir.D05G294400 Gossypium hirsutum HOM05D006246 ORTHO05D007932 3.8e-13 78.6 45 77.8
Lj5g0026305 Lotus japonicus HOM05D006246 ORTHO05D007932 3.8e-13 78.6 43 86.0
Actinidia30538 Actinidia chinensis HOM05D006246 ORTHO05D007932 4.9e-13 78.2 46 76.1
Cpa.g.sc49.43 Carica papaya HOM05D006246 ORTHO05D007932 4.9e-13 78.2 45 80.0
CDE02G3719 Ceratophyllum demersum HOM05D006246 ORTHO05D007932 4.9e-13 78.2 48 79.2
PSO170G6052 Papaver somniferum HOM05D006246 ORTHO05D007932 4.9e-13 78.2 45 75.6
PSO782G0303 Papaver somniferum HOM05D006246 ORTHO05D007932 4.9e-13 78.2 45 75.6
Cfa012983 Carpinus fangiana HOM05D006246 ORTHO05D007932 8.4e-13 77.4 45 82.2
Lalb_Chr01g0009371 Lupinus albus HOM05D006246 ORTHO05D007932 8.4e-13 77.4 36 94.4
Sabra05G0055400 Salix brachista HOM05D006246 ORTHO05D007932 1.1e-12 77.0 44 79.5
Lalb_Chr03g0034581 Lupinus albus HOM05D006246 ORTHO05D007932 1.9e-12 76.3 36 91.7
MBI03_g07695_MAGBIO Magnolia biondii HOM05D006246 ORTHO05D007932 1.9e-12 76.3 42 76.2
CAN.G1647.5 Capsicum annuum HOM05D006246 ORTHO05D007932 2.4e-12 75.9 37 89.2
CDE09G0543 Ceratophyllum demersum HOM05D000196 ORTHO05D000279 2.4e-12 75.9 48 75.0
TWI59G0384 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 2.4e-12 75.9 45 82.2
A05p14510 Brassica napus HOM05D006246 ORTHO05D007932 3.2e-12 75.5 54 72.2
CSS0014325 Camellia sinensis var. sinensis HOM05D006246 ORTHO05D007932 3.2e-12 75.5 41 80.5
Eucgr.I02713 Eucalyptus grandis HOM05D006246 ORTHO05D007932 3.2e-12 75.5 48 77.1
Gohir.A05G410500 Gossypium hirsutum HOM05D006246 ORTHO05D007932 3.2e-12 75.5 43 79.1
Sed0027909 Sechium edule HOM05D006246 ORTHO05D007932 3.2e-12 75.5 36 91.7
Haze_21346 Corylus avellana HOM05D006246 ORTHO05D007932 5.4e-12 74.7 43 83.7
Haze_21352 Corylus avellana HOM05D006246 ORTHO05D007932 5.4e-12 74.7 43 83.7
TWI14G1413 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 7.1e-12 74.3 45 80.0
Zm00001eb059790 Zea mays HOM05D006246 ORTHO05D007932 7.1e-12 74.3 47 76.6
HanXRQChr11g0322351 Helianthus annuus HOM05D006246 ORTHO05D007932 9.3e-12 73.9 36 86.1
MD06G1239400 Malus domestica HOM05D006246 ORTHO05D007932 9.3e-12 73.9 35 91.4
Os05g0270400 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 9.3e-12 73.9 45 77.8
QL02p028696 Quercus lobata HOM05D006246 ORTHO05D007932 9.3e-12 73.9 42 78.6
Sed0011737 Sechium edule HOM05D006246 ORTHO05D007932 9.3e-12 73.9 34 94.1
TWI23G1247 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 9.3e-12 73.9 34 94.1
Cc05_g03280 Coffea canephora HOM05D006246 ORTHO05D007932 1.2e-11 73.6 35 91.4
Aqoxy7G03540 Aquilegia oxysepala HOM05D006246 ORTHO05D007932 1.6e-11 73.2 45 77.8
vmacro01162 Vaccinium macrocarpon HOM05D006246 ORTHO05D007932 2.1e-11 72.8 34 91.2
Actinidia08157 Actinidia chinensis HOM05D006246 ORTHO05D007932 2.7e-11 72.4 36 83.3
Medtr7g085440 Medicago truncatula HOM05D006246 ORTHO05D007932 2.7e-11 72.4 33 93.9
Ah.05g178740 Amaranthus hybridus HOM05D006246 ORTHO05D007932 3.5e-11 72.0 34 91.2
BraA05t20382Z Brassica rapa HOM05D006246 ORTHO05D007932 6.0e-11 71.2 53 69.8
Duzib128G0188 Durio zibethinus HOM05D006246 ORTHO05D007932 7.9e-11 70.9 38 81.6
arahy.Tifrunner.gnm1.ann1.V9PSGM Arachis hypogaea HOM05D006246 ORTHO05D007932 1.0e-10 70.5 36 86.1
Nitab4.5_0001579g0010 Nicotiana tabacum HOM05D006246 ORTHO05D007932 1.0e-10 70.5 35 85.7
TAR636G3186 Trochodendron aralioides HOM05D006246 ORTHO05D007932 3.0e-10 68.9 34 85.3
Nitab4.5_0000365g0140 Nicotiana tabacum HOM05D006246 ORTHO05D007932 3.9e-10 68.6 34 88.2
Os04g0295000 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 5.1e-10 68.2 36 80.6
CARHR068770 Cardamine hirsuta HOM05D006246 ORTHO05D007932 3.3e-09 65.5 52 61.5
AagrBONN_evm.TU.Sc2ySwM_344.1565 Anthoceros agrestis HOM05D006246 ORTHO05D007932 4.3e-09 65.1 35 80.0
FAN04G2944 Fragaria x ananassa HOM05D006246 ORTHO05D007932 9.6e-09 63.9 41 73.2
Gohir.A05G410100 Gossypium hirsutum HOM05D006246 ORTHO05D007932 3.7e-08 62.0 37 75.7
Sc26g0000490 Simmondsia chinensis HOM05D006246 ORTHO05D007932 3.1e-07 58.9 42 66.7
Mapoly0071s0091 Marchantia polymorpha HOM05D006246 ORTHO05D007932 1.2e-06 57.0 44 56.8
Gohir.A05G410800 Gossypium hirsutum HOM05D006246 ORTHO05D007932 2.6e-06 55.8 34 76.5
Gohir.D04G005100 Gossypium hirsutum HOM05D006246 ORTHO05D007932 2.6e-06 55.8 34 76.5
Gorai.012G006400 Gossypium raimondii HOM05D006246 ORTHO05D007932 2.6e-06 55.8 34 76.5
PRCOL_00001132 Prasinoderma coloniale HOM05D006246 ORTHO05D007932 3.4e-06 55.5 44 61.4


User provided reference genes

Program Settings