Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 7.0e-122 440.7 225 100.0
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 1.8e-32 143.7 106 69.8
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 9.7e-31 137.9 105 70.5
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 2.8e-30 136.3 106 67.0
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 1.1e-29 134.4 107 69.2
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 2.6e-28 129.8 95 68.4
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 7.7e-28 128.3 106 64.2
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.0e-27 127.9 107 65.4
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 8.5e-27 124.8 106 62.3
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 1.1e-26 124.4 106 65.1
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.4e-26 124.0 105 65.7
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 3.2e-26 122.9 105 64.8
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 7.2e-26 121.7 105 63.8
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 7.2e-26 121.7 106 62.3
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 1.2e-25 120.9 104 63.5
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 1.6e-25 120.6 105 62.9
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 2.1e-25 120.2 106 61.3
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.7e-25 119.8 126 54.8
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 3.6e-25 119.4 110 59.1
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 3.6e-25 119.4 97 68.0
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 6.1e-25 118.6 87 69.0
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 6.1e-25 118.6 87 69.0
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 6.1e-25 118.6 116 55.2
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 1.0e-24 117.9 113 55.8
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 1.0e-24 117.9 112 55.4
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.0e-24 117.9 87 67.8
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 1.0e-24 117.9 96 64.6
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.0e-24 117.9 111 59.5
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 1.4e-24 117.5 89 67.4
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 1.8e-24 117.1 97 66.0
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 1.8e-24 117.1 104 60.6
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 2.3e-24 116.7 91 69.2
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 3.0e-24 116.3 105 58.1
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 3.0e-24 116.3 105 58.1
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 3.0e-24 116.3 89 66.3
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.0e-24 116.3 89 66.3
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.0e-24 116.3 106 59.4
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 3.0e-24 116.3 129 55.0
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 3.9e-24 115.9 104 60.6
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 5.1e-24 115.5 105 59.0
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 5.1e-24 115.5 89 65.2
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 6.7e-24 115.2 105 57.1
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 6.7e-24 115.2 107 59.8
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 6.7e-24 115.2 88 65.9
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 8.8e-24 114.8 86 68.6
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 8.8e-24 114.8 89 65.2
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 8.8e-24 114.8 89 65.2
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 1.1e-23 114.4 89 65.2
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 1.1e-23 114.4 107 57.9
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 1.5e-23 114.0 106 57.5
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.5e-23 114.0 105 58.1
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.5e-23 114.0 89 65.2
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 1.5e-23 114.0 105 57.1
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 2.0e-23 113.6 105 59.0
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 2.0e-23 113.6 105 59.0
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 2.0e-23 113.6 104 57.7
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.0e-23 113.6 94 62.8
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 2.0e-23 113.6 102 59.8
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 2.0e-23 113.6 91 69.2
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 2.5e-23 113.2 96 62.5
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 3.3e-23 112.8 107 57.0
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 4.3e-23 112.5 95 63.2
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 4.3e-23 112.5 106 57.5
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 4.3e-23 112.5 89 64.0
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 5.7e-23 112.1 105 58.1
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 5.7e-23 112.1 105 58.1
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 5.7e-23 112.1 108 60.2
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 7.4e-23 111.7 107 57.0
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 7.4e-23 111.7 106 53.8
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 9.7e-23 111.3 89 66.3
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 9.7e-23 111.3 102 59.8
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 9.7e-23 111.3 102 58.8
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.3e-22 110.9 84 63.1
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 2.2e-22 110.2 103 55.3
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 3.7e-22 109.4 84 67.9
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 3.7e-22 109.4 106 53.8
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 6.3e-22 108.6 107 56.1
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 6.3e-22 108.6 107 57.9
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.1e-21 107.8 107 57.9
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 1.1e-21 107.8 87 63.2
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 1.1e-21 107.8 96 60.4
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 2.4e-21 106.7 91 63.7
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 3.1e-21 106.3 89 64.0
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 4.1e-21 105.9 89 58.4
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 5.3e-21 105.5 106 55.7
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 5.3e-21 105.5 101 57.4
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 5.3e-21 105.5 101 57.4
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 6.9e-21 105.1 89 60.7
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 1.2e-20 104.4 107 53.3
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 1.5e-20 104.0 89 58.4
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 1.5e-20 104.0 89 58.4
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.5e-20 104.0 126 50.0
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 2.0e-20 103.6 97 55.7
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 2.0e-20 103.6 102 53.9
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 2.6e-20 103.2 89 58.4
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 2.6e-20 103.2 89 59.6
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 2.6e-20 103.2 98 56.1
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 4.5e-20 102.4 90 57.8
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 5.9e-20 102.1 106 58.5
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 7.7e-20 101.7 89 58.4
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 7.7e-20 101.7 89 57.3
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 7.7e-20 101.7 107 56.1
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 7.7e-20 101.7 89 59.6
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 1.0e-19 101.3 89 57.3
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 1.0e-19 101.3 89 57.3
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 1.0e-19 101.3 89 57.3
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.3e-19 100.9 89 57.3
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 1.7e-19 100.5 89 58.4
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 2.2e-19 100.1 89 57.3
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 2.2e-19 100.1 89 57.3
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 2.9e-19 99.8 89 56.2
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 2.9e-19 99.8 87 58.6
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 3.8e-19 99.4 96 58.3
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 6.5e-19 98.6 86 60.5
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 8.5e-19 98.2 104 55.8
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 8.5e-19 98.2 83 59.0
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 8.5e-19 98.2 90 56.7
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 1.1e-18 97.8 89 55.1
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 2.5e-18 96.7 88 62.5
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 3.2e-18 96.3 87 58.6
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 3.2e-18 96.3 83 57.8
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 7.2e-18 95.1 89 55.1
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 9.4e-18 94.7 89 56.2
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 9.4e-18 94.7 89 56.2
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 9.4e-18 94.7 95 55.8
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 1.2e-17 94.4 94 54.3
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 1.6e-17 94.0 87 58.6
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 6.1e-17 92.0 107 46.7
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 6.1e-17 92.0 88 55.7
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 1.5e-15 87.4 61 72.1
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 5.7e-15 85.5 74 62.2
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 2.2e-14 83.6 105 43.8
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 2.8e-14 83.2 73 63.0
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 2.4e-13 80.1 57 68.4
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 1.2e-12 77.8 62 71.0
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 1.7e-11 73.9 72 61.1
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 2.2e-11 73.6 57 64.9
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 2.9e-11 73.2 65 63.1
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 3.8e-11 72.8 114 39.5
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 3.8e-11 72.8 84 47.6
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 6.5e-11 72.0 47 78.7
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 4.2e-10 69.3 66 60.6
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 1.6e-09 67.4 56 67.9
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 1.8e-08 63.9 70 52.9
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 5.2e-08 62.4 66 59.1


User provided reference genes

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