Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 1.2e-78 296.6 167 100.0
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 2.5e-36 156.0 181 60.2
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 2.7e-30 136.0 171 50.9
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 4.7e-30 135.2 162 52.5
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 1.4e-29 133.7 177 55.4
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 4.4e-28 128.6 175 49.7
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 1.8e-21 106.7 164 43.3
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 8.8e-21 104.4 149 44.3
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 1.1e-20 104.0 176 44.3
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 1.1e-20 104.0 155 48.4
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 7.4e-20 101.3 178 46.1
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 1.4e-18 97.1 160 46.2
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 2.4e-18 96.3 162 42.6
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 3.1e-18 95.9 159 49.1
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 4.1e-18 95.5 173 41.6
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 4.1e-18 95.5 175 40.0
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 9.1e-18 94.4 138 47.1
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 1.6e-17 93.6 194 41.2
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 1.6e-17 93.6 174 38.5
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 3.5e-17 92.4 178 42.1
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 4.5e-17 92.0 158 50.0
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 5.9e-17 91.7 155 41.9
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 7.7e-17 91.3 143 43.4
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 7.7e-17 91.3 156 41.7
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.0e-16 90.9 174 39.1
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 1.0e-16 90.9 160 48.1
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 1.3e-16 90.5 169 41.4
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 1.7e-16 90.1 151 41.7
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.7e-16 90.1 175 41.7
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.8e-16 89.0 175 41.1
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 5.0e-16 88.6 160 43.8
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 5.0e-16 88.6 151 41.7
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 5.0e-16 88.6 175 38.9
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 8.5e-16 87.8 173 39.3
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 8.5e-16 87.8 173 39.3
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.1e-15 87.4 151 44.4
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 2.5e-15 86.3 170 43.5
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 2.5e-15 86.3 118 43.2
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 2.5e-15 86.3 175 40.6
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 3.2e-15 85.9 161 41.0
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 3.2e-15 85.9 137 44.5
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 4.2e-15 85.5 163 39.3
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 7.2e-15 84.7 174 40.2
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 7.2e-15 84.7 164 38.4
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.2e-14 84.0 151 37.7
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 1.2e-14 84.0 149 42.3
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 1.2e-14 84.0 163 41.1
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 1.6e-14 83.6 156 39.7
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 2.1e-14 83.2 161 46.0
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 2.1e-14 83.2 160 40.0
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 3.6e-14 82.4 185 37.8
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 3.6e-14 82.4 166 38.6
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 4.7e-14 82.0 152 42.1
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 4.7e-14 82.0 166 38.0
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 4.7e-14 82.0 143 44.8
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 8.0e-14 81.3 139 41.7
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 8.0e-14 81.3 154 42.9
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 1.4e-13 80.5 165 35.2
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 1.4e-13 80.5 136 39.7
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 2.3e-13 79.7 164 38.4
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 4.0e-13 79.0 152 43.4
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 5.2e-13 78.6 162 34.6
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 5.2e-13 78.6 177 37.3
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 6.7e-13 78.2 152 36.2
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 8.8e-13 77.8 149 42.3
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 8.8e-13 77.8 171 40.4
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 8.8e-13 77.8 153 35.9
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 2.0e-12 76.6 170 42.9
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 2.6e-12 76.3 164 36.6
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 3.3e-12 75.9 178 39.3
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 3.3e-12 75.9 159 37.7
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 5.7e-12 75.1 184 35.9
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 9.7e-12 74.3 183 37.2
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 2.8e-11 72.8 164 37.8
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 4.8e-11 72.0 118 44.9
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 6.3e-11 71.6 136 34.6
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 8.2e-11 71.2 172 44.2
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 1.1e-10 70.9 180 33.9
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 1.4e-10 70.5 164 36.6
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 1.8e-10 70.1 180 34.4
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 1.8e-10 70.1 176 37.5
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 2.4e-10 69.7 149 38.9
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 2.4e-10 69.7 142 37.3
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 4.1e-10 68.9 182 36.3
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 4.1e-10 68.9 167 35.9
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 4.1e-10 68.9 182 36.3
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 4.1e-10 68.9 126 41.3
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 4.1e-10 68.9 114 39.5
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 4.1e-10 68.9 170 35.9
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 5.3e-10 68.6 157 43.3
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 7.0e-10 68.2 175 36.6
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 9.1e-10 67.8 168 35.1
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.2e-09 67.4 166 33.1
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 1.2e-09 67.4 146 34.9
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 1.2e-09 67.4 146 34.9
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 1.6e-09 67.0 167 35.3
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 1.6e-09 67.0 150 39.3
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 2.0e-09 66.6 142 38.7
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 2.7e-09 66.2 164 37.2
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 3.5e-09 65.9 176 38.6
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 5.9e-09 65.1 145 35.9
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 1.0e-08 64.3 159 36.5
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 1.3e-08 63.9 172 32.0
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 1.3e-08 63.9 172 32.0
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 1.3e-08 63.9 172 32.0
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.3e-08 63.9 131 32.1
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 2.2e-08 63.2 172 35.5
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 2.2e-08 63.2 171 35.7
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 2.9e-08 62.8 172 33.1
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 6.5e-08 61.6 129 38.8
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 8.5e-08 61.2 175 36.6
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.1e-07 60.8 135 38.5
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.1e-07 60.8 116 39.7
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 1.1e-07 60.8 144 36.1
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.5e-07 60.5 175 33.7
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 1.5e-07 60.5 155 34.2
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 1.5e-07 60.5 155 34.2
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 1.5e-07 60.5 144 35.4
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 1.9e-07 60.1 152 30.3
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 2.5e-07 59.7 144 34.7
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 2.5e-07 59.7 127 37.8
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 3.2e-07 59.3 158 32.3
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 3.2e-07 59.3 192 34.9
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 4.2e-07 58.9 142 33.1
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 7.2e-07 58.2 147 38.1
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.2e-06 57.4 176 37.5
SGA_v2.0_scaffold145G35996 Striga asiatica HOM05D005065 ORTHO05D005944 1.2e-06 57.4 88 47.7
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 1.6e-06 57.0 182 37.4
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 2.1e-06 56.6 118 33.1
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 2.7e-06 56.2 111 36.0
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 3.6e-06 55.8 188 32.4
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 3.6e-06 55.8 133 36.1
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 3.6e-06 55.8 142 33.1
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.6e-06 55.8 176 37.5


User provided reference genes

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