Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 2692.9 1365 100.0
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1892.9 1398 71.8
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1838.9 1392 70.6
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1790.0 1384 69.1
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1570.8 1421 60.5
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1507.7 1416 58.1
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1497.3 1417 57.4
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1493.8 1415 58.3
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1490.3 1397 58.2
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1485.3 1449 57.1
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1481.5 1416 56.9
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1477.6 1403 57.9
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1477.2 1464 56.9
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1474.9 1409 57.2
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1468.4 1419 57.1
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1467.6 1400 57.2
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1463.0 1419 56.9
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1459.9 1416 57.1
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1451.4 1425 57.0
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1449.5 1409 57.3
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1446.0 1399 57.3
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1443.7 1417 56.1
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1443.3 1396 56.6
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1440.6 1436 56.3
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1439.9 1368 57.3
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1439.1 1418 55.9
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1437.6 1424 56.0
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1436.4 1388 57.7
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1435.2 1421 56.4
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1418.7 1423 55.0
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1417.9 1424 56.0
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1408.7 1426 56.1
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1406.3 1421 55.9
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1399.8 1420 55.2
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1399.8 1408 55.6
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1397.1 1417 55.0
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1397.1 1415 55.1
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1395.2 1424 54.8
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1392.9 1417 54.6
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1379.4 1488 53.2
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1377.8 1412 54.3
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1376.3 1472 53.7
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1374.0 1434 53.4
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1371.3 1275 58.4
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1363.6 1417 54.3
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1357.8 1445 53.6
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1357.4 1446 53.5
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1356.7 1426 54.2
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1352.8 1425 53.7
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1349.7 1389 55.2
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1344.7 1428 52.9
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1344.7 1416 53.1
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1343.2 1421 53.8
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1323.5 1400 53.6
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1318.9 1399 54.6
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 1317.4 1136 63.6
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1313.5 1402 53.6
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1309.3 1412 52.8
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1307.4 1400 53.9
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1307.0 1399 53.3
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1304.3 1324 55.3
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1304.3 1418 53.7
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1303.1 1403 53.1
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1301.6 1428 52.6
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1299.3 1370 53.6
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1296.6 1372 53.9
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1288.9 1184 59.0
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1286.9 1397 53.5
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1280.0 1394 53.8
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1274.2 1430 51.7
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1274.2 1409 52.6
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1271.1 1421 51.2
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1268.8 1394 52.2
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1266.1 1401 52.9
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1265.8 1395 53.3
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1263.1 1389 53.2
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1262.3 1391 53.1
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1260.4 1391 53.5
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1255.0 1430 51.6
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1252.3 1386 52.7
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1249.2 1386 52.7
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1249.2 1290 54.8
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1233.8 1371 51.3
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1229.5 1287 54.3
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1224.9 1381 50.5
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1199.5 1382 49.7
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1190.3 1392 49.2
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1158.7 1080 59.1
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 0.0e+00 1141.3 1141 55.7
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1093.6 1101 55.9
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 8.9e-305 1050.8 1235 50.3
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 3.4e-304 1048.9 1106 53.4
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 8.4e-303 1044.3 1346 46.9
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 4.7e-298 1028.5 855 62.8
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 1.6e-282 976.9 1307 45.2
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 3.1e-249 866.3 1046 48.2
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 5.7e-243 845.5 1455 39.9
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 1.7e-239 833.9 1433 38.4
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 3.8e-239 832.8 935 52.9
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 3.6e-237 826.2 1385 39.2
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 6.5e-231 805.4 774 57.4
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 1.1e-217 761.5 1417 36.3
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 1.2e-203 714.9 1003 45.0
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 4.7e-189 666.4 467 71.7
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 6.4e-170 602.8 1768 30.5
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 4.1e-148 530.4 881 40.2
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 2.2e-146 524.6 577 52.9
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 7.0e-132 476.5 450 57.8
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 8.5e-130 469.5 595 47.9
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 1.2e-128 465.7 381 61.7
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 5.5e-121 440.3 650 44.5
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 2.3e-111 408.3 386 58.5
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 3.4e-110 404.4 1335 28.1
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 5.4e-84 317.4 342 53.5
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 8.9e-71 273.5 558 36.9
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 2.1e-67 262.3 1114 26.1
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 2.0e-62 245.7 390 41.3
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 1.5e-57 229.6 264 50.8
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 2.1e-56 225.7 161 68.9
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 6.0e-51 207.6 165 67.3
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 2.2e-21 109.4 103 58.3
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 1.4e-20 106.7 94 60.6
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 8.8e-18 97.4 65 67.7
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 6.3e-16 91.3 102 52.0
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 1.6e-14 86.7 103 53.4
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 7.7e-14 84.3 59 66.1
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 1.1e-09 70.5 49 65.3
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 4.5e-06 58.5 85 48.2


User provided reference genes

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