Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 4.3e-74 281.2 136 100.0
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 1.8e-72 275.8 136 97.1
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 1.7e-70 269.2 136 91.9
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 4.9e-70 267.7 136 90.4
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 1.1e-69 266.5 136 91.9
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 2.4e-69 265.4 134 92.5
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 4.6e-68 261.2 135 90.4
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 7.8e-68 260.4 136 89.7
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 1.3e-67 259.6 136 89.7
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 1.7e-67 259.2 136 87.5
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 1.7e-67 259.2 136 87.5
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 1.7e-67 259.2 136 89.0
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 1.7e-67 259.2 135 90.4
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 1.7e-67 259.2 136 89.7
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 2.3e-67 258.8 136 88.2
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 2.3e-67 258.8 136 89.7
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 2.3e-67 258.8 136 89.7
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 2.3e-67 258.8 136 89.7
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 3.9e-67 258.1 136 86.8
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 3.9e-67 258.1 136 86.8
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 3.9e-67 258.1 136 86.8
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 3.9e-67 258.1 136 86.8
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 3.9e-67 258.1 136 88.2
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 3.9e-67 258.1 136 88.2
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 3.9e-67 258.1 136 88.2
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 5.1e-67 257.7 136 89.0
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 5.1e-67 257.7 136 87.5
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 6.6e-67 257.3 136 85.3
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 8.6e-67 256.9 136 86.8
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 8.6e-67 256.9 136 88.2
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.1e-66 256.5 136 89.0
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 1.1e-66 256.5 136 89.7
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 1.1e-66 256.5 136 86.0
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 1.5e-66 256.1 136 88.2
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 1.9e-66 255.8 135 87.4
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 1.9e-66 255.8 136 89.0
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 2.5e-66 255.4 136 89.0
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 2.5e-66 255.4 136 89.0
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 2.5e-66 255.4 135 88.1
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 2.5e-66 255.4 136 86.0
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 3.3e-66 255.0 136 85.3
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 3.3e-66 255.0 136 86.8
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 3.3e-66 255.0 136 87.5
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 4.3e-66 254.6 136 88.2
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 4.3e-66 254.6 136 88.2
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 4.3e-66 254.6 136 86.8
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 5.6e-66 254.2 136 86.0
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 5.6e-66 254.2 136 88.2
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 5.6e-66 254.2 135 87.4
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 7.3e-66 253.8 136 87.5
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 7.3e-66 253.8 136 89.0
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 9.5e-66 253.4 135 85.9
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 1.2e-65 253.1 136 87.5
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 1.2e-65 253.1 136 86.0
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 1.2e-65 253.1 136 89.0
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 87.5
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 87.5
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 2.1e-65 252.3 135 88.1
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 2.8e-65 251.9 136 87.5
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 2.8e-65 251.9 133 88.7
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 3.6e-65 251.5 136 85.3
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 4.7e-65 251.1 132 88.6
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 6.2e-65 250.8 135 85.9
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 2.4e-64 248.8 136 86.8
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 4.0e-64 248.1 136 86.0
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 6.8e-64 247.3 136 86.0
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 6.8e-64 247.3 136 86.0
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 6.8e-64 247.3 136 86.0
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 6.8e-64 247.3 136 86.0
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 2.0e-63 245.7 136 85.3
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 2.6e-63 245.4 136 85.3
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 5.8e-63 244.2 136 84.6
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 7.6e-63 243.8 136 83.8
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 9.9e-63 243.4 136 83.1
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 1.7e-62 242.7 136 83.1
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 2.9e-62 241.9 136 82.4
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 2.9e-62 241.9 136 82.4
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 3.8e-62 241.5 136 80.9
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 3.8e-62 241.5 136 80.9
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 4.9e-62 241.1 124 87.9
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 4.9e-62 241.1 136 83.8
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 6.4e-62 240.7 136 82.4
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 1.1e-61 240.0 135 84.4
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 1.4e-61 239.6 136 80.9
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 1.9e-61 239.2 138 81.9
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 1.9e-61 239.2 136 80.9
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 3.2e-61 238.4 136 83.1
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 4.1e-61 238.0 136 80.1
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 4.6e-60 234.6 124 88.7
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 2.3e-59 232.3 124 87.1
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 3.0e-59 231.9 124 87.9
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 6.6e-59 230.7 132 83.3
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 8.7e-59 230.3 124 87.1
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.9e-58 229.2 124 87.1
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 2.5e-58 228.8 124 89.5
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 5.6e-58 227.6 206 57.3
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 1.2e-57 226.5 119 88.2
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 1.6e-57 226.1 124 83.1
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 4.7e-57 224.6 131 81.7
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 1.5e-55 219.5 141 71.6
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 4.4e-55 218.0 130 79.2
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 1.7e-54 216.1 133 75.9
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 1.7e-54 216.1 131 73.3
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 2.2e-54 215.7 133 74.4
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 1.9e-53 212.6 120 82.5
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 3.2e-53 211.8 138 71.0
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 9.3e-53 210.3 138 72.5
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 6.6e-51 204.1 131 70.2
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 6.6e-51 204.1 121 81.0
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 5.6e-50 201.1 136 69.9
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 2.1e-49 199.1 131 69.5
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 1.3e-46 189.9 136 64.7
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 1.9e-45 186.0 134 63.4
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 1.2e-44 183.3 153 60.8
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 2.1e-41 172.6 92 89.1
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 1.8e-40 169.5 125 71.2
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 3.1e-40 168.7 125 61.6
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 7.9e-36 154.1 76 90.8
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 5.1e-35 151.4 92 73.9
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 8.7e-35 150.6 74 90.5
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 1.5e-34 149.8 74 86.5
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 1.5e-34 149.8 74 86.5
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 5.6e-34 147.9 74 87.8
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 5.6e-34 147.9 74 87.8
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 9.6e-34 147.1 75 86.7
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 8.2e-33 144.1 75 81.3
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 1.1e-32 143.7 74 85.1
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 1.3e-30 136.7 73 82.2
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 1.2e-28 130.2 76 78.9
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 7.9e-28 127.5 140 52.9
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 1.5e-26 123.2 131 42.7
Sopen11g008620 Solanum pennellii HOM05D000147 ORTHO05D004360 3.1e-24 115.5 72 79.2
PRCOL_00003843 Prasinoderma coloniale HOM05D005489 ORTHO05D006629 1.4e-19 100.1 117 47.0
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 2.2e-17 92.8 165 40.6
ClCG03G009140 Citrullus lanatus HOM05D005489 ORTHO05D006629 4.8e-17 91.7 50 90.0
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 3.4e-15 85.5 47 78.7
Solyc11g013660.1 Solanum lycopersicum HOM05D005489 ORTHO05D006629 3.6e-12 75.5 70 60.0
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 6.7e-11 71.2 35 80.0
Os08g0469200 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 4.1e-08 62.0 67 49.3
PRCOL_00003098 Prasinoderma coloniale HOM05D001685 ORTHO05D007488 3.4e-07 58.9 137 30.7


User provided reference genes

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