Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 6.4e-51 203.8 101 100.0
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 2.6e-44 181.8 136 72.1
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 4.5e-44 181.0 136 71.3
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 3.8e-43 177.9 136 69.9
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 1.9e-42 175.6 103 83.5
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.9e-42 175.6 136 69.1
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.9e-42 175.6 111 82.0
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 3.2e-42 174.9 138 68.1
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 3.2e-42 174.9 138 68.1
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 4.2e-42 174.5 138 68.1
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 1.6e-41 172.6 136 66.9
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 3.5e-41 171.4 116 74.1
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 4.6e-41 171.0 136 68.4
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 1.8e-40 169.1 113 76.1
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 1.8e-40 169.1 136 67.6
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 3.0e-40 168.3 136 66.9
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 6.7e-40 167.2 137 62.0
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 8.7e-40 166.8 120 70.8
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 1.5e-39 166.0 136 64.0
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.9e-39 165.6 136 66.9
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.3e-39 164.9 136 66.9
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 3.3e-39 164.9 136 65.4
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.3e-39 164.5 136 65.4
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 5.7e-39 164.1 136 66.2
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 5.7e-39 164.1 136 66.2
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 5.7e-39 164.1 136 65.4
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 9.6e-39 163.3 136 64.7
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 9.6e-39 163.3 136 65.4
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 1.3e-38 162.9 136 64.7
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 1.3e-38 162.9 137 64.2
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.3e-38 162.9 136 64.7
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 1.6e-38 162.5 136 63.2
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 2.1e-38 162.2 136 63.2
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 2.1e-38 162.2 136 63.2
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 2.1e-38 162.2 136 63.2
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 2.1e-38 162.2 127 67.7
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 2.8e-38 161.8 136 64.7
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 2.8e-38 161.8 136 64.7
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 2.8e-38 161.8 136 64.7
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.8e-38 161.8 136 64.0
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.8e-38 161.8 136 64.0
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 2.8e-38 161.8 136 64.0
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 2.8e-38 161.8 128 65.6
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 2.8e-38 161.8 136 61.8
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 4.8e-38 161.0 136 62.5
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 4.8e-38 161.0 136 64.0
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 6.3e-38 160.6 137 62.8
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 8.2e-38 160.2 136 62.5
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 8.2e-38 160.2 136 64.0
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 8.2e-38 160.2 136 62.5
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.1e-37 159.8 148 60.1
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 1.1e-37 159.8 136 63.2
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 1.1e-37 159.8 136 62.5
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 1.1e-37 159.8 136 62.5
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.4e-37 159.5 136 61.0
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 1.4e-37 159.5 136 61.8
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 1.4e-37 159.5 136 61.8
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.4e-37 159.5 153 58.8
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.8e-37 159.1 159 57.9
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.8e-37 159.1 136 63.2
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 2.4e-37 158.7 136 61.8
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 2.4e-37 158.7 136 64.0
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 2.4e-37 158.7 136 61.8
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 3.1e-37 158.3 172 52.3
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 3.1e-37 158.3 117 70.9
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 4.1e-37 157.9 149 57.7
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 4.1e-37 157.9 136 61.0
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 4.1e-37 157.9 136 61.8
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 4.1e-37 157.9 136 61.0
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 4.1e-37 157.9 136 61.8
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 6.9e-37 157.1 136 61.8
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.5e-36 156.0 110 73.6
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.5e-36 156.0 136 61.8
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 2.6e-36 155.2 137 61.3
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 5.9e-36 154.1 136 60.3
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 1.7e-35 152.5 91 80.2
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 2.5e-34 148.7 152 55.9
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 9.3e-34 146.7 169 49.7
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 1.6e-33 146.0 136 59.6
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 4.6e-33 144.4 136 53.7
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 4.6e-33 144.4 136 54.4
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 6.1e-33 144.1 136 58.8
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 7.9e-33 143.7 136 54.4
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 6.7e-32 140.6 139 54.7
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 6.7e-32 140.6 189 45.5
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 6.7e-32 140.6 70 97.1
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 4.3e-31 137.9 140 52.9
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 7.4e-31 137.1 70 94.3
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 2.2e-30 135.6 70 91.4
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 2.2e-30 135.6 70 90.0
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 2.2e-30 135.6 70 91.4
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 2.2e-30 135.6 70 91.4
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 2.8e-30 135.2 70 91.4
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 2.8e-30 135.2 70 92.9
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 4.8e-30 134.4 70 91.4
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 2.4e-29 132.1 155 43.2
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.2e-28 129.8 70 88.6
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.2e-28 129.8 70 88.6
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 1.0e-27 126.7 70 85.7
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 1.3e-27 126.3 88 69.3
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 1.3e-27 126.3 88 69.3
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 1.7e-27 125.9 70 87.1
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 2.2e-27 125.6 70 85.7
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 2.9e-27 125.2 70 84.3
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 2.9e-27 125.2 70 81.4
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 2.9e-27 125.2 70 81.4
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.8e-27 124.8 120 58.3
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 6.5e-27 124.0 70 81.4
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 6.5e-27 124.0 70 81.4
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 6.5e-27 124.0 87 70.1
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 6.5e-27 124.0 93 64.5
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 8.5e-27 123.6 70 84.3
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 1.1e-26 123.2 70 84.3
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 1.1e-26 123.2 70 84.3
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 1.4e-26 122.9 70 84.3
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 2.5e-26 122.1 71 80.3
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 2.5e-26 122.1 71 80.3
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.5e-26 122.1 70 84.3
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 3.2e-26 121.7 70 84.3
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 4.2e-26 121.3 70 82.9
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 5.5e-26 120.9 70 80.0
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 9.4e-26 120.2 70 80.0
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 9.4e-26 120.2 70 80.0
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 9.4e-26 120.2 70 80.0
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 9.4e-26 120.2 70 81.4
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 1.6e-25 119.4 67 82.1
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.6e-25 119.4 71 78.9
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.1e-25 119.0 70 78.6
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 3.6e-25 118.2 70 78.6
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 3.6e-25 118.2 70 78.6
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 3.6e-25 118.2 70 77.1
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 2.3e-24 115.5 110 56.4
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 5.3e-21 104.4 78 59.0
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 5.0e-19 97.8 57 78.9
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 8.5e-19 97.1 56 80.4
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 1.1e-15 86.7 43 93.0
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 2.6e-15 85.5 142 33.1
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 3.1e-13 78.6 44 79.5
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 4.1e-13 78.2 46 76.1
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 9.1e-13 77.0 133 33.1
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 1.2e-12 76.6 128 32.8
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 4.2e-10 68.2 41 75.6
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 4.2e-10 68.2 80 51.2
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 1.2e-09 66.6 70 54.3
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 1.6e-09 66.2 37 81.1
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 1.6e-09 66.2 37 81.1
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 3.6e-09 65.1 37 75.7
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 3.6e-09 65.1 37 81.1
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 4.7e-09 64.7 37 75.7
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 6.1e-09 64.3 37 78.4
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 6.1e-09 64.3 37 78.4
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 1.4e-08 63.2 37 78.4
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.4e-08 63.2 31 96.8
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 1.4e-08 63.2 37 78.4
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 2.3e-08 62.4 37 75.7
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 2.6e-07 58.9 87 42.5
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 3.7e-06 55.1 29 86.2


User provided reference genes

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