Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold117G32369 Striga asiatica HOM05D004884 ORTHO05D005873 2.8e-79 298.5 148 100.0
SalBow3G1656 Salvia bowleyana HOM05D004884 ORTHO05D005873 2.0e-77 292.4 148 97.3
Migut.D01065 Erythranthe guttata HOM05D004884 ORTHO05D005873 1.0e-76 290.0 148 95.9
MSTRG.9432 Avicennia marina HOM05D004884 ORTHO05D005873 1.7e-76 289.3 148 94.6
Oeu045160.1 Olea europaea HOM05D004884 ORTHO05D005873 6.5e-76 287.3 148 94.6
Cc04_g04240 Coffea canephora HOM05D004884 ORTHO05D005873 1.9e-75 285.8 148 94.6
Oeu052257.1 Olea europaea HOM05D004884 ORTHO05D005873 2.5e-75 285.4 148 93.9
ECA240G3509 Erigeron canadensis HOM05D004884 ORTHO05D005873 7.2e-75 283.9 148 93.9
Dinv30589 Davidia involucrata HOM05D004884 ORTHO05D005873 1.2e-74 283.1 146 93.8
Hma1.2p1_0515F.1_g170110 Hydrangea macrophylla HOM05D004884 ORTHO05D005873 3.6e-74 281.6 148 92.6
Lsat_1_v5_gn_1_2440 Lactuca sativa HOM05D004884 ORTHO05D005873 3.6e-74 281.6 148 92.6
MD17G1208900 Malus domestica HOM05D004884 ORTHO05D005873 3.6e-74 281.6 148 92.6
ECA247G2927 Erigeron canadensis HOM05D001354 ORTHO05D002582 4.7e-74 281.2 148 93.2
Prupe.3G084300 Prunus persica HOM05D004884 ORTHO05D005873 4.7e-74 281.2 148 92.6
vmacro20098 Vaccinium macrocarpon HOM05D004884 ORTHO05D005873 7.9e-74 280.4 148 91.2
THA.LOC104808231 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 1.0e-73 280.0 148 91.2
HanXRQChr02g0046821 Helianthus annuus HOM05D004884 ORTHO05D005873 1.4e-73 279.6 148 91.9
CSS0003587 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 3.0e-73 278.5 146 93.2
Rhsim10G0061400 Rhododendron simsii HOM05D004884 ORTHO05D005873 3.0e-73 278.5 146 91.8
THA.LOC104812503 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 3.0e-73 278.5 148 89.2
CAN.G407.94 Capsicum annuum HOM05D004884 ORTHO05D005873 5.1e-73 277.7 148 90.5
PGR031G3479 Punica granatum HOM05D004884 ORTHO05D005873 5.1e-73 277.7 148 91.9
Sopen03g035510 Solanum pennellii HOM05D004884 ORTHO05D005873 6.7e-73 277.3 148 90.5
unitig_747.g21296 Utricularia gibba HOM05D004884 ORTHO05D005873 6.7e-73 277.3 148 88.5
Solyc03g116600.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 1.5e-72 276.2 148 89.9
Actinidia18100 Actinidia chinensis HOM05D004884 ORTHO05D005873 2.0e-72 275.8 146 91.1
RcHm_v2.0_Chr2g0135941 Rosa chinensis HOM05D004884 ORTHO05D005873 2.0e-72 275.8 148 89.2
Solyc06g068080.4 Solanum lycopersicum HOM05D004884 ORTHO05D005873 2.6e-72 275.4 148 90.5
Sopen06g025360 Solanum pennellii HOM05D004884 ORTHO05D005873 2.6e-72 275.4 148 90.5
PGSC0003DMG400000635 Solanum tuberosum HOM05D004884 ORTHO05D005873 2.6e-72 275.4 148 89.9
PGSC0003DMG400028511 Solanum tuberosum HOM05D004884 ORTHO05D005873 2.6e-72 275.4 148 90.5
Thecc.06G021400 Theobroma cacao HOM05D004884 ORTHO05D005873 2.6e-72 275.4 148 88.5
COL.COLO4_12946 Corchorus olitorius HOM05D004884 ORTHO05D005873 4.4e-72 274.6 148 87.8
FvH4_6g29940 Fragaria vesca HOM05D004884 ORTHO05D005873 4.4e-72 274.6 148 90.5
FAN14G1538 Fragaria x ananassa HOM05D004884 ORTHO05D005873 4.4e-72 274.6 148 90.5
VMungo0331G0880 Vigna mungo HOM05D004884 ORTHO05D005873 4.4e-72 274.6 148 89.2
Eucgr.F02527 Eucalyptus grandis HOM05D004884 ORTHO05D005873 5.7e-72 274.2 148 89.9
Potri.001G193100 Populus trichocarpa HOM05D004884 ORTHO05D005873 5.7e-72 274.2 148 87.8
Sabra01G0135700 Salix brachista HOM05D004884 ORTHO05D005873 5.7e-72 274.2 148 87.8
Ciclev10026708m.g Citrus clementina HOM05D004884 ORTHO05D005873 7.4e-72 273.9 148 89.2
Lalb_Chr04g0262431 Lupinus albus HOM05D004884 ORTHO05D005873 9.7e-72 273.5 148 88.5
Manes.04G114100 Manihot esculenta HOM05D004884 ORTHO05D005873 9.7e-72 273.5 146 89.7
Phvul.010G154800 Phaseolus vulgaris HOM05D004884 ORTHO05D005873 9.7e-72 273.5 148 88.5
CiPaw.08G011500 Carya illinoinensis HOM05D004884 ORTHO05D005873 1.3e-71 273.1 147 88.4
FAN09G2574 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.3e-71 273.1 148 89.9
Glyma.08G211500 Glycine max HOM05D004884 ORTHO05D005873 1.3e-71 273.1 148 88.5
GSVIVG01017313001 Vitis vinifera HOM05D004884 ORTHO05D005873 1.7e-71 272.7 148 89.2
Atru.chr1.2995 Acer truncatum HOM05D004884 ORTHO05D005873 2.2e-71 272.3 148 88.5
FAN02G1988 Fragaria x ananassa HOM05D004884 ORTHO05D005873 2.8e-71 271.9 148 89.9
Lj3g0000080 Lotus japonicus HOM05D004884 ORTHO05D005873 2.8e-71 271.9 148 87.2
Psat5g301920 Pisum sativum HOM05D004884 ORTHO05D005873 2.8e-71 271.9 148 87.8
QL05p029075 Quercus lobata HOM05D004884 ORTHO05D005873 2.8e-71 271.9 147 88.4
Gohir.D10G076700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 87.8
Lalb_Chr22g0350881 Lupinus albus HOM05D004884 ORTHO05D005873 3.7e-71 271.6 148 88.5
Duzib235G0621 Durio zibethinus HOM05D004884 ORTHO05D005873 4.8e-71 271.2 148 87.2
Medtr2g103690 Medicago truncatula HOM05D004884 ORTHO05D005873 4.8e-71 271.2 148 88.5
PSO455G0277 Papaver somniferum HOM05D004884 ORTHO05D005873 8.2e-71 270.4 148 87.2
Glyma.07G031300 Glycine max HOM05D004884 ORTHO05D005873 1.8e-70 269.2 148 87.8
PSO170G2441 Papaver somniferum HOM05D004884 ORTHO05D005873 3.1e-70 268.5 148 86.5
Carub.0001s1514 Capsella rubella HOM05D004884 ORTHO05D005873 5.3e-70 267.7 148 84.5
AL1G27470 Arabidopsis lyrata HOM05D004884 ORTHO05D005873 9.1e-70 266.9 146 85.6
AT1G15370 Arabidopsis thaliana HOM05D004884 ORTHO05D005873 9.1e-70 266.9 146 85.6
Sp1g13700 Schrenkiella parvula HOM05D004884 ORTHO05D005873 9.1e-70 266.9 148 85.1
Aqoxy1G02408 Aquilegia oxysepala HOM05D004884 ORTHO05D005873 1.2e-69 266.5 146 85.6
BcaB03g14545 Brassica carinata HOM05D004884 ORTHO05D005873 1.2e-69 266.5 148 85.1
BcaC05g25475 Brassica carinata HOM05D004884 ORTHO05D005873 1.2e-69 266.5 148 85.1
BcaC05g25490 Brassica carinata HOM05D004884 ORTHO05D005873 1.2e-69 266.5 148 85.1
A06p11400 Brassica napus HOM05D004884 ORTHO05D005873 1.2e-69 266.5 148 85.1
A09p61460 Brassica napus HOM05D004884 ORTHO05D005873 1.2e-69 266.5 148 85.1
C05p13510 Brassica napus HOM05D004884 ORTHO05D005873 1.2e-69 266.5 148 85.1
C08p45030 Brassica napus HOM05D004884 ORTHO05D005873 1.2e-69 266.5 148 85.1
BolC5t30088H Brassica oleracea HOM05D004884 ORTHO05D005873 1.2e-69 266.5 148 85.1
BraA06t24317Z Brassica rapa HOM05D004884 ORTHO05D005873 1.2e-69 266.5 148 85.1
BraA09t41517Z Brassica rapa HOM05D004884 ORTHO05D005873 1.2e-69 266.5 148 85.1
ClCG05G016940 Citrullus lanatus HOM05D004884 ORTHO05D005873 1.2e-69 266.5 148 86.5
MELO3C003694.2 Cucumis melo HOM05D004884 ORTHO05D005873 1.2e-69 266.5 148 86.5
Thhalv10009024m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 1.2e-69 266.5 148 85.1
Gohir.A10G074700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.5e-69 266.2 148 86.5
Peaxi162Scf00207g00728 Petunia axillaris HOM05D004884 ORTHO05D005873 1.5e-69 266.2 148 87.8
CARHR015900 Cardamine hirsuta HOM05D004884 ORTHO05D005873 2.6e-69 265.4 146 84.9
CsaV3_3G046450 Cucumis sativus L. HOM05D004884 ORTHO05D005873 2.6e-69 265.4 148 85.8
MBI04_g07835_MAGBIO Magnolia biondii HOM05D004884 ORTHO05D005873 3.4e-69 265.0 146 86.3
BcaC07g41506 Brassica carinata HOM05D004884 ORTHO05D005873 4.5e-69 264.6 148 84.5
BolC8t52049H Brassica oleracea HOM05D004884 ORTHO05D005873 4.5e-69 264.6 148 84.5
Cfa013154 Carpinus fangiana HOM05D004884 ORTHO05D005873 5.9e-69 264.2 148 85.1
QL02p021869 Quercus lobata HOM05D004884 ORTHO05D005873 5.9e-69 264.2 147 85.0
Sed0027624 Sechium edule HOM05D004884 ORTHO05D005873 5.9e-69 264.2 148 85.8
FAN05G0038 Fragaria x ananassa HOM05D004884 ORTHO05D005873 7.7e-69 263.8 168 79.8
AUR62012381 Chenopodium quinoa HOM05D004884 ORTHO05D005873 1.0e-68 263.5 148 83.1
Thhalv10019295m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 1.0e-68 263.5 148 84.5
TWI75G0638 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 1.7e-68 262.7 148 83.1
Nn2g12037 Nelumbo nucifera HOM05D004884 ORTHO05D005873 5.0e-68 261.2 148 83.8
TAR636G0424 Trochodendron aralioides HOM05D004884 ORTHO05D005873 2.5e-67 258.8 146 82.2
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 7.2e-67 257.3 146 83.6
EL10Ac2g04219 Beta vulgaris HOM05D004884 ORTHO05D005873 1.2e-66 256.5 158 77.8
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 2.7e-66 255.4 139 89.9
Solyc11g008330.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 3.9e-65 251.5 148 81.8
Zm00001eb064920 Zea mays HOM05D004884 ORTHO05D005873 3.9e-65 251.5 146 80.1
Aa31LG4G430 Aethionema arabicum HOM05D004884 ORTHO05D005873 1.5e-64 249.6 133 88.7
TWI34G0752 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 1.5e-64 249.6 148 77.0
Sed0022166 Sechium edule HOM05D004884 ORTHO05D005873 7.4e-64 247.3 140 83.6
Glyma.15G008700 Glycine max HOM05D004884 ORTHO05D005873 9.7e-64 246.9 130 90.0
CSS0011163 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 6.3e-63 244.2 129 89.9
Gohir.D06G099800 Gossypium hirsutum HOM05D004884 ORTHO05D005873 8.2e-63 243.8 144 79.2
Gorai.010G114700 Gossypium raimondii HOM05D004884 ORTHO05D005873 5.3e-62 241.1 144 77.8
AUR62031521 Chenopodium quinoa HOM05D004884 ORTHO05D005873 7.0e-62 240.7 198 62.1
SalBow6G6988 Salvia bowleyana HOM05D004884 ORTHO05D005873 1.2e-61 240.0 122 97.5
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 1.6e-61 239.6 135 81.5
Dinv38109 Davidia involucrata HOM05D000250 ORTHO05D002477 2.2e-60 235.7 124 92.7
EL10Ac9g22900 Beta vulgaris HOM05D004884 ORTHO05D005873 2.5e-59 232.3 148 74.3
Actinidia36285 Actinidia chinensis HOM05D004884 ORTHO05D005873 1.2e-58 229.9 124 89.5
arahy.Tifrunner.gnm1.ann1.Q10AU9 Arachis hypogaea HOM05D004884 ORTHO05D005873 1.6e-58 229.6 124 88.7
arahy.Tifrunner.gnm1.ann1.W4DERE Arachis hypogaea HOM05D004884 ORTHO05D005873 1.6e-58 229.6 124 88.7
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.6e-58 229.6 123 91.1
Sc23g0006790 Simmondsia chinensis HOM05D004884 ORTHO05D005873 1.0e-57 226.9 124 85.5
Gorai.011G082800 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.4e-57 226.5 124 87.1
AUR62012868 Chenopodium quinoa HOM05D004884 ORTHO05D005873 1.8e-57 226.1 146 71.9
SMO143G0054 Selaginella moellendorffii HOM05D004884 ORTHO05D005873 2.6e-56 222.2 146 71.2
Peaxi162Scf00332g00767 Petunia axillaris HOM05D004884 ORTHO05D005873 3.3e-56 221.9 130 84.6
Sabra06G0198100 Salix brachista HOM05D004884 ORTHO05D005873 1.8e-54 216.1 126 78.6
Nitab4.5_0006187g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 9.1e-54 213.8 130 77.7
Peaxi162Scf00145g01210 Petunia axillaris HOM05D004884 ORTHO05D005873 9.1e-54 213.8 130 77.7
Pp3c18_11860 Physcomitrium patens HOM05D004884 ORTHO05D005873 1.9e-51 206.1 146 64.4
Potri.006G253700 Populus trichocarpa HOM05D004884 ORTHO05D005873 1.9e-51 206.1 148 66.9
CAN.G321.60 Capsicum annuum HOM05D004884 ORTHO05D005873 3.2e-51 205.3 121 79.3
Mapoly0005s0226 Marchantia polymorpha HOM05D004884 ORTHO05D005873 4.4e-48 194.9 146 59.6
AagrBONN_evm.TU.Sc2ySwM_368.2705 Anthoceros agrestis HOM05D004884 ORTHO05D005873 9.8e-48 193.7 145 62.1
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 4.1e-46 188.3 118 75.4
QL05p029040 Quercus lobata HOM05D004884 ORTHO05D005873 3.6e-42 175.3 113 76.1
Sopen11g004140 Solanum pennellii HOM05D004884 ORTHO05D005873 1.4e-41 173.3 148 62.8
Gorai.001G184900 Gossypium raimondii HOM05D004884 ORTHO05D005873 3.4e-40 168.7 148 60.8
BcaC07g41508 Brassica carinata HOM05D004884 ORTHO05D005873 1.7e-39 166.4 119 68.9
Gohir.D07G161600 Gossypium hirsutum HOM05D004884 ORTHO05D005873 4.9e-39 164.9 148 60.1
Nitab4.5_0005235g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 2.4e-38 162.5 119 68.9
CBR_g8585 Chara braunii HOM05D004884 ORTHO05D005873 2.7e-37 159.1 143 53.8
Oeu024660.1 Olea europaea HOM05D004884 ORTHO05D005873 8.6e-36 154.1 82 92.7
Gohir.D13G076450 Gossypium hirsutum HOM05D004884 ORTHO05D005873 5.2e-33 144.8 84 79.8
Gorai.013G087100 Gossypium raimondii HOM05D004884 ORTHO05D005873 9.8e-32 140.6 89 76.4
Haze_21525 Corylus avellana HOM05D004884 ORTHO05D005873 2.3e-28 129.4 152 50.7
Nitab4.5_0001450g0150 Nicotiana tabacum HOM05D004884 ORTHO05D005873 2.2e-23 112.8 86 64.0
Nitab4.5_0000620g0040 Nicotiana tabacum HOM05D004884 ORTHO05D005873 4.1e-22 108.6 65 83.1
DCAR_015322 Daucus carota HOM05D004884 ORTHO05D005873 1.6e-21 106.7 58 89.7
Hund04518 Selenicereus undatus HOM05D004884 ORTHO05D005873 1.7e-20 103.2 60 81.7
Gohir.A06G098210 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.9e-19 99.8 63 73.0
Nn8g39461 Nelumbo nucifera HOM05D004884 ORTHO05D005873 3.3e-19 99.0 63 73.0
Gohir.A13G076901 Gossypium hirsutum HOM05D004884 ORTHO05D005873 6.2e-18 94.7 128 46.1
Cre12.g561200 Chlamydomonas reinhardtii HOM05D004884 ORTHO05D005873 2.3e-17 92.8 142 35.9
Gohir.D01G156500 Gossypium hirsutum HOM05D004884 ORTHO05D005873 7.5e-16 87.8 50 80.0
MCO11G456 Micromonas commoda HOM05D004884 ORTHO05D005873 7.5e-16 87.8 152 33.6
TPR.G29435 Trifolium pratense HOM05D004884 ORTHO05D005873 2.9e-15 85.9 46 84.8
PRCOL_00001860 Prasinoderma coloniale HOM05D004884 ORTHO05D005873 1.2e-13 80.5 141 33.3
CAN.G185.10 Capsicum annuum HOM05D004884 ORTHO05D005873 3.1e-09 65.9 64 56.2


User provided reference genes

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