Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold116G32307 Striga asiatica HOM05D003007 ORTHO05D003417 2.5e-68 261.9 127 100.0
SGA_v2.0_scaffold43G16521 Striga asiatica HOM05D003007 ORTHO05D003417 5.0e-16 88.2 60 68.3
MSTRG.28160 Avicennia marina HOM05D003007 ORTHO05D003417 2.5e-12 75.9 59 61.0
SalBow5G3534 Salvia bowleyana HOM05D003007 ORTHO05D003417 9.7e-12 73.9 60 55.0
Migut.N01758 Erythranthe guttata HOM05D003007 ORTHO05D003417 1.3e-11 73.6 59 54.2
Thecc.01G389300 Theobroma cacao HOM05D003007 ORTHO05D003417 1.8e-10 69.7 53 66.0
COL.COLO4_12440 Corchorus olitorius HOM05D003007 ORTHO05D003417 9.1e-10 67.4 51 66.7
MSTRG.4921 Avicennia marina HOM05D003007 ORTHO05D003417 1.5e-09 66.6 56 57.1
Duzib138G0568 Durio zibethinus HOM05D003007 ORTHO05D003417 2.0e-09 66.2 51 64.7
Potri.014G054800 Populus trichocarpa HOM05D003007 ORTHO05D003417 2.0e-09 66.2 48 66.7
Cpa.g.sc101.38 Carica papaya HOM05D003007 ORTHO05D003417 2.6e-09 65.9 53 58.5
Gohir.A11G076800 Gossypium hirsutum HOM05D003007 ORTHO05D003417 2.6e-09 65.9 53 64.2
Duzib133G1239 Durio zibethinus HOM05D003007 ORTHO05D003417 3.4e-09 65.5 51 66.7
Sabra14G0040500 Salix brachista HOM05D003007 ORTHO05D003417 3.4e-09 65.5 46 67.4
ECA236G3085 Erigeron canadensis HOM05D003007 ORTHO05D003417 4.5e-09 65.1 47 68.1
Potri.002G141000 Populus trichocarpa HOM05D003007 ORTHO05D003417 5.9e-09 64.7 46 67.4
Aqoxy3G02815 Aquilegia oxysepala HOM05D003007 ORTHO05D003417 7.7e-09 64.3 54 59.3
Sabra02G0110000 Salix brachista HOM05D003007 ORTHO05D003417 7.7e-09 64.3 46 65.2
Gorai.007G086900 Gossypium raimondii HOM05D003007 ORTHO05D003417 1.0e-08 63.9 46 69.6
THA.LOC104817198 Tarenaya hassleriana HOM05D003007 ORTHO05D003417 1.0e-08 63.9 56 55.4
Carub.0005s2717 Capsella rubella HOM05D003007 ORTHO05D003417 1.7e-08 63.2 58 53.4
Dinv43646 Davidia involucrata HOM05D003007 ORTHO05D003417 1.7e-08 63.2 44 68.2
Gohir.A08G059700 Gossypium hirsutum HOM05D003007 ORTHO05D003417 1.7e-08 63.2 55 56.4
Gohir.D08G068900 Gossypium hirsutum HOM05D003007 ORTHO05D003417 1.7e-08 63.2 55 56.4
Gorai.004G072200 Gossypium raimondii HOM05D003007 ORTHO05D003417 1.7e-08 63.2 55 56.4
TWI14G0692 Tripterygium wilfordii HOM05D003007 ORTHO05D003417 1.7e-08 63.2 51 64.7
TWI14G1416 Tripterygium wilfordii HOM05D003007 ORTHO05D003417 1.7e-08 63.2 51 64.7
Os03g0101500 Oryza sativa ssp. japonica HOM05D003007 ORTHO05D003417 2.2e-08 62.8 46 67.4
CARHR170800 Cardamine hirsuta HOM05D003007 ORTHO05D003417 2.9e-08 62.4 68 48.5
Lj9A559T47 Lonicera japonica HOM05D003007 ORTHO05D003417 2.9e-08 62.4 56 51.8
Manes.01G271500 Manihot esculenta HOM05D003007 ORTHO05D003417 2.9e-08 62.4 45 66.7
PGR004G0268 Punica granatum HOM05D003007 ORTHO05D003417 2.9e-08 62.4 51 62.7
Rhsim07G0034100 Rhododendron simsii HOM05D003007 ORTHO05D003417 2.9e-08 62.4 42 66.7
HPP92_022462 Vanilla planifolia HOM05D003007 ORTHO05D003417 2.9e-08 62.4 71 49.3
TAR374G1292 Trochodendron aralioides HOM05D003007 ORTHO05D003417 3.8e-08 62.0 44 68.2
GSVIVG01018233001 Vitis vinifera HOM05D003007 ORTHO05D003417 5.0e-08 61.6 55 54.5
THA.LOC104802488 Tarenaya hassleriana HOM05D003007 ORTHO05D003417 6.5e-08 61.2 42 64.3
Ciclev10021618m.g Citrus clementina HOM05D003007 ORTHO05D003417 8.5e-08 60.8 51 60.8
Eucgr.D01499 Eucalyptus grandis HOM05D003007 ORTHO05D003417 8.5e-08 60.8 46 65.2
AL5G42710 Arabidopsis lyrata HOM05D003007 ORTHO05D003417 1.1e-07 60.5 45 60.0
CSS0021008 Camellia sinensis var. sinensis HOM05D003007 ORTHO05D003417 1.1e-07 60.5 51 58.8
CSS0034288 Camellia sinensis var. sinensis HOM05D003007 ORTHO05D003417 1.1e-07 60.5 51 58.8
HanXRQChr06g0168771 Helianthus annuus HOM05D003007 ORTHO05D003417 1.1e-07 60.5 47 61.7
Lsat_1_v5_gn_7_10420 Lactuca sativa HOM05D003007 ORTHO05D003417 1.1e-07 60.5 52 61.5
Actinidia40396 Actinidia chinensis HOM05D003007 ORTHO05D003417 1.4e-07 60.1 62 53.2
Cfa011103 Carpinus fangiana HOM05D003007 ORTHO05D003417 1.4e-07 60.1 45 57.8
Haze_02764 Corylus avellana HOM05D003007 ORTHO05D003417 1.4e-07 60.1 45 57.8
MELO3C005974.2 Cucumis melo HOM05D003007 ORTHO05D003417 1.4e-07 60.1 41 65.9
TWI59G0774 Tripterygium wilfordii HOM05D003007 ORTHO05D003417 1.4e-07 60.1 42 66.7
BcaC02g10157 Brassica carinata HOM05D003007 ORTHO05D003417 1.9e-07 59.7 56 50.0
C04p32110 Brassica napus HOM05D003007 ORTHO05D003417 1.9e-07 59.7 56 50.0
BolC4t24764H Brassica oleracea HOM05D003007 ORTHO05D003417 1.9e-07 59.7 56 50.0
Hma1.2p1_0199F.1_g085700 Hydrangea macrophylla HOM05D003007 ORTHO05D003417 1.9e-07 59.7 46 63.0
MD00G1058700 Malus domestica HOM05D003007 ORTHO05D003417 1.9e-07 59.7 42 64.3
Actinidia12163 Actinidia chinensis HOM05D003007 ORTHO05D003417 2.5e-07 59.3 44 63.6
Ah.03g137210 Amaranthus hybridus HOM05D003007 ORTHO05D003417 2.5e-07 59.3 44 61.4
BcaB02g08167 Brassica carinata HOM05D003007 ORTHO05D003417 2.5e-07 59.3 45 57.8
A04p01600 Brassica napus HOM05D003007 ORTHO05D003417 2.5e-07 59.3 45 57.8
BraA04t15884Z Brassica rapa HOM05D003007 ORTHO05D003417 2.5e-07 59.3 45 57.8
Ca_23127_v3 Cicer arietinum L. HOM05D003007 ORTHO05D003417 2.5e-07 59.3 41 68.3
CsaV3_3G007520 Cucumis sativus L. HOM05D003007 ORTHO05D003417 2.5e-07 59.3 41 65.9
Thhalv10006161m.g Eutrema salsugineum HOM05D003007 ORTHO05D003417 2.5e-07 59.3 45 57.8
Sp5g02780 Schrenkiella parvula HOM05D003007 ORTHO05D003417 2.5e-07 59.3 45 57.8
Sed0015747 Sechium edule HOM05D003007 ORTHO05D003417 2.5e-07 59.3 40 67.5
Aa31LG10G14520 Aethionema arabicum HOM05D003007 ORTHO05D003417 3.2e-07 58.9 45 57.8
AT3G60450 Arabidopsis thaliana HOM05D003007 ORTHO05D003417 3.2e-07 58.9 45 57.8
MD07G1100900 Malus domestica HOM05D003007 ORTHO05D003417 3.2e-07 58.9 46 58.7
RcHm_v2.0_Chr1g0346561 Rosa chinensis HOM05D003007 ORTHO05D003417 3.2e-07 58.9 46 56.5
CANSAT21G0187 Cannabis sativa HOM05D003007 ORTHO05D003417 4.2e-07 58.5 46 56.5
AUR62004126 Chenopodium quinoa HOM05D003007 ORTHO05D003417 4.2e-07 58.5 44 61.4
arahy.Tifrunner.gnm1.ann1.8DE1JP Arachis hypogaea HOM05D003007 ORTHO05D003417 5.5e-07 58.2 41 63.4
arahy.Tifrunner.gnm1.ann1.I6YUT2 Arachis hypogaea HOM05D003007 ORTHO05D003417 5.5e-07 58.2 41 63.4
Lalb_Chr07g0195601 Lupinus albus HOM05D003007 ORTHO05D003417 5.5e-07 58.2 41 61.0
Nitab4.5_0011467g0010 Nicotiana tabacum HOM05D003007 ORTHO05D003417 5.5e-07 58.2 55 47.3
Atru.chr5.184 Acer truncatum HOM05D003007 ORTHO05D003417 7.2e-07 57.8 55 58.2
BcaC07g40561 Brassica carinata HOM05D003007 ORTHO05D003417 7.2e-07 57.8 45 55.6
BcaC07g42780 Brassica carinata HOM05D003007 ORTHO05D003417 7.2e-07 57.8 45 53.3
Glyma.01G074500 Glycine max HOM05D003007 ORTHO05D003417 7.2e-07 57.8 41 65.9
Glyma.08G339000 Glycine max HOM05D003007 ORTHO05D003417 7.2e-07 57.8 41 65.9
Oeu035672.1 Olea europaea HOM05D003007 ORTHO05D003417 7.2e-07 57.8 45 62.2
Prupe.2G124000 Prunus persica HOM05D003007 ORTHO05D003417 7.2e-07 57.8 63 47.6
ClCG05G000360 Citrullus lanatus HOM05D003007 ORTHO05D003417 9.4e-07 57.4 41 63.4
Cc02_g24830 Coffea canephora HOM05D003007 ORTHO05D003417 9.4e-07 57.4 57 49.1
Nn1g00916 Nelumbo nucifera HOM05D003007 ORTHO05D003417 9.4e-07 57.4 44 61.4
Nn6g33871 Nelumbo nucifera HOM05D003007 ORTHO05D003417 9.4e-07 57.4 44 56.8
Sed0015490 Sechium edule HOM05D003007 ORTHO05D003417 9.4e-07 57.4 40 65.0
A09p52700 Brassica napus HOM05D003007 ORTHO05D003417 1.2e-06 57.0 45 53.3
BraA09t40700Z Brassica rapa HOM05D003007 ORTHO05D003417 1.2e-06 57.0 45 53.3
Medtr8g006290 Medicago truncatula HOM05D003007 ORTHO05D003417 1.2e-06 57.0 41 63.4
Phvul.008G140400 Phaseolus vulgaris HOM05D003007 ORTHO05D003417 1.2e-06 57.0 52 55.8
TPR.G24961 Trifolium pratense HOM05D003007 ORTHO05D003417 1.2e-06 57.0 41 61.0
vmacro13479 Vaccinium macrocarpon HOM05D003007 ORTHO05D003417 1.2e-06 57.0 44 61.4
FAN10G4311 Fragaria x ananassa HOM05D003007 ORTHO05D003417 1.6e-06 56.6 46 52.2
BcaC07g40563 Brassica carinata HOM05D003007 ORTHO05D003417 2.1e-06 56.2 59 42.4
CAN.G365.2 Capsicum annuum HOM05D003007 ORTHO05D003417 2.1e-06 56.2 41 61.0
DCAR_015822 Daucus carota HOM05D003007 ORTHO05D003417 2.1e-06 56.2 58 51.7
FvH4_7g09660 Fragaria vesca HOM05D003007 ORTHO05D003417 2.1e-06 56.2 46 52.2
FAN03G2548 Fragaria x ananassa HOM05D003007 ORTHO05D003417 2.1e-06 56.2 46 52.2
FAN06G4833 Fragaria x ananassa HOM05D003007 ORTHO05D003417 2.1e-06 56.2 46 52.2
FAN10G4277 Fragaria x ananassa HOM05D003007 ORTHO05D003417 2.1e-06 56.2 46 52.2
PGSC0003DMG400006995 Solanum tuberosum HOM05D003007 ORTHO05D003417 2.1e-06 56.2 55 45.5
AUR62013715 Chenopodium quinoa HOM05D003007 ORTHO05D003417 2.7e-06 55.8 44 56.8
PSO063G4465 Papaver somniferum HOM05D003007 ORTHO05D003417 2.7e-06 55.8 56 44.6
PSO782G0141 Papaver somniferum HOM05D003007 ORTHO05D003417 2.7e-06 55.8 56 44.6
VMungo1383G2899 Vigna mungo HOM05D003007 ORTHO05D003417 2.7e-06 55.8 41 63.4
EL10Ac1g00797 Beta vulgaris HOM05D003007 ORTHO05D003417 3.6e-06 55.5 44 59.1
C08p35400 Brassica napus HOM05D003007 ORTHO05D003417 3.6e-06 55.5 45 51.1
Ca_20449_v3 Cicer arietinum L. HOM05D003007 ORTHO05D003417 3.6e-06 55.5 43 53.5
Glyma.07G110600 Glycine max HOM05D003007 ORTHO05D003417 3.6e-06 55.5 41 61.0
QL04p033433 Quercus lobata HOM05D003007 ORTHO05D003417 3.6e-06 55.5 41 58.5
Hund27397 Selenicereus undatus HOM05D003007 ORTHO05D003417 3.6e-06 55.5 46 58.7
Solyc05g050800.3 Solanum lycopersicum HOM05D003007 ORTHO05D003417 3.6e-06 55.5 55 47.3
Sopen05g029280 Solanum pennellii HOM05D003007 ORTHO05D003417 3.6e-06 55.5 55 47.3
BcaC07g40562 Brassica carinata HOM05D003007 ORTHO05D003417 4.7e-06 55.1 45 51.1
BolC8t51133H Brassica oleracea HOM05D003007 ORTHO05D003417 4.7e-06 55.1 45 51.1
Peaxi162Scf01052g00023 Petunia axillaris HOM05D003007 ORTHO05D003417 4.7e-06 55.1 55 45.5
Sc02g0002950 Simmondsia chinensis HOM05D003007 ORTHO05D003417 4.7e-06 55.1 42 59.5
VMungo0331G1355 Vigna mungo HOM05D003007 ORTHO05D003417 4.7e-06 55.1 41 58.5
BcaC07g42781 Brassica carinata HOM05D003007 ORTHO05D003417 6.1e-06 54.7 75 36.0
CDE05G1330 Ceratophyllum demersum HOM05D003007 ORTHO05D003417 6.1e-06 54.7 55 47.3
ClCG05G000370 Citrullus lanatus HOM05D003007 ORTHO05D003417 6.1e-06 54.7 45 55.6
DCAR_029777 Daucus carota HOM05D003007 ORTHO05D003417 6.1e-06 54.7 45 55.6
Lj3g0007973 Lotus japonicus HOM05D003007 ORTHO05D003417 6.1e-06 54.7 41 58.5
PGR042G3287 Punica granatum HOM05D003007 ORTHO05D003417 6.1e-06 54.7 54 51.9
FAN01G2888 Fragaria x ananassa HOM05D003007 ORTHO05D003417 7.9e-06 54.3 46 52.2


User provided reference genes

Program Settings