Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 6.3e-160 567.4 288 100.0
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 9.9e-121 437.2 288 75.3
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 1.5e-116 423.3 279 75.6
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.4e-106 390.2 285 69.8
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 1.5e-97 360.1 289 64.7
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 4.9e-96 355.1 250 70.4
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 9.3e-95 350.9 313 59.4
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 3.9e-93 345.5 311 58.5
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 3.3e-92 342.4 313 59.4
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 4.8e-91 338.6 314 58.0
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 6.2e-91 338.2 314 58.9
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 8.1e-91 337.8 313 58.5
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 1.1e-90 337.4 310 60.3
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 1.1e-90 337.4 293 61.8
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 9.0e-90 334.3 310 59.0
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 4.5e-89 332.0 231 71.0
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 7.6e-89 331.3 310 58.1
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 4.2e-87 325.5 305 58.0
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 1.6e-86 323.6 312 58.7
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 3.5e-86 322.4 260 63.8
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 7.9e-86 321.2 206 76.7
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 7.9e-86 321.2 314 56.4
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 5.1e-85 318.5 325 54.8
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 8.7e-85 317.8 315 55.2
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 2.8e-83 312.8 288 56.9
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 3.1e-82 309.3 258 63.6
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 3.1e-82 309.3 313 54.0
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 4.1e-82 308.9 291 57.4
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 1.2e-81 307.4 313 55.0
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 7.6e-81 304.7 206 70.9
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 1.7e-80 303.5 223 67.3
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 5.0e-80 302.0 205 72.7
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 6.5e-80 301.6 226 66.4
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 1.4e-79 300.4 226 65.9
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 1.9e-79 300.1 213 69.5
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.9e-79 300.1 273 57.9
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 4.2e-79 298.9 308 55.5
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 5.5e-79 298.5 204 70.6
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 9.3e-79 297.7 205 69.3
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 2.1e-78 296.6 288 53.8
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 2.7e-78 296.2 187 76.5
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 2.7e-78 296.2 204 71.6
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 3.6e-78 295.8 271 56.8
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 4.6e-78 295.4 276 55.8
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 4.6e-78 295.4 293 56.3
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 6.1e-78 295.0 290 56.6
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 7.9e-78 294.7 205 71.7
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 2.3e-77 293.1 185 74.6
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 3.0e-77 292.7 218 67.0
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 3.9e-77 292.4 277 55.6
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 5.1e-77 292.0 289 54.0
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 5.1e-77 292.0 289 54.0
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 8.7e-77 291.2 245 60.4
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 1.5e-76 290.4 195 69.7
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 1.5e-76 290.4 276 55.1
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 2.5e-76 289.7 186 73.1
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 2.5e-76 289.7 186 73.1
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 5.7e-76 288.5 221 64.3
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 5.7e-76 288.5 221 64.3
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 5.7e-76 288.5 297 54.5
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 7.4e-76 288.1 289 53.6
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 9.7e-76 287.7 272 55.9
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 9.7e-76 287.7 187 74.9
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 2.2e-75 286.6 189 72.0
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 8.2e-75 284.6 216 66.7
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 1.4e-74 283.9 193 68.4
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 1.8e-74 283.5 192 73.4
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 2.4e-74 283.1 186 71.0
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 9.0e-74 281.2 234 61.5
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 9.0e-74 281.2 229 61.1
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 1.2e-73 280.8 269 55.4
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 2.0e-73 280.0 186 72.0
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 2.6e-73 279.6 287 54.4
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 2.6e-73 279.6 258 58.5
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 4.5e-73 278.9 168 76.8
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 5.9e-73 278.5 275 56.0
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 7.7e-73 278.1 189 70.9
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.7e-72 276.9 192 68.8
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 2.2e-72 276.6 188 70.7
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 2.9e-72 276.2 230 60.9
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 3.8e-72 275.8 188 72.3
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 6.5e-72 275.0 174 76.4
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 1.4e-71 273.9 259 55.6
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 4.2e-71 272.3 204 65.7
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 9.4e-71 271.2 191 69.6
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 1.2e-70 270.8 256 55.5
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 2.1e-70 270.0 187 70.1
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 2.7e-70 269.6 204 65.7
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.7e-70 269.6 227 61.7
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 3.6e-70 269.2 191 71.2
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 6.1e-70 268.5 200 65.0
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 1.0e-69 267.7 186 68.8
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 1.4e-69 267.3 262 56.1
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 3.0e-69 266.2 186 68.8
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 3.0e-69 266.2 187 68.4
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 3.0e-69 266.2 190 69.5
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 3.9e-69 265.8 192 70.8
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 6.7e-69 265.0 202 65.8
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.4e-68 262.3 247 55.1
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.4e-68 262.3 223 59.6
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 5.7e-68 261.9 223 59.6
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.7e-68 261.9 223 59.6
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 9.7e-68 261.2 169 74.6
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 1.3e-67 260.8 214 63.1
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 1.7e-67 260.4 204 65.2
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 2.8e-67 259.6 199 64.3
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 1.8e-66 256.9 211 57.8
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 4.5e-65 252.3 250 54.8
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 5.0e-64 248.8 247 53.8
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 2.1e-62 243.4 160 70.0
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 2.3e-61 240.0 192 63.5
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 3.0e-61 239.6 220 55.5
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 4.8e-59 232.3 230 57.4
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 5.9e-57 225.3 134 79.1
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 7.7e-57 224.9 263 49.8
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 5.5e-55 218.8 144 72.9
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 2.1e-54 216.9 176 59.7
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 4.7e-54 215.7 156 69.2
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 8.0e-54 214.9 162 65.4
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 4.4e-52 209.1 152 69.1
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 1.7e-51 207.2 157 67.5
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 1.2e-49 201.1 156 66.0
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 4.2e-47 192.6 109 82.6
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 2.3e-45 186.8 118 76.3
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 2.1e-38 163.7 93 82.8
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.8e-32 142.9 183 45.4
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 2.8e-30 136.7 92 67.4
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.8e-29 134.0 177 48.6
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 4.0e-29 132.9 112 60.7
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 4.0e-29 132.9 112 60.7
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 1.5e-28 131.0 133 47.4
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 2.6e-28 130.2 98 65.3
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 4.9e-27 125.9 152 41.4
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 1.4e-26 124.4 141 49.6
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 1.8e-26 124.0 133 44.4
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 2.5e-23 113.6 80 70.0
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 3.4e-20 103.2 78 64.1
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 2.3e-16 90.5 84 57.1
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.4e-12 76.3 124 44.4
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 6.0e-09 65.9 39 69.2
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 3.3e-07 60.1 37 70.3
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 1.2e-06 58.2 109 42.2
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 1.2e-06 58.2 43 62.8


User provided reference genes

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