Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 5.7e-178 627.5 317 100.0
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 2.3e-139 499.2 318 83.6
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 2.6e-98 362.8 328 60.4
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 1.3e-97 360.5 327 63.3
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 1.6e-79 300.4 326 55.5
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 1.0e-73 281.2 322 52.8
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 8.2e-68 261.5 318 50.3
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 9.0e-67 258.1 256 55.5
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 1.2e-66 257.7 316 48.4
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 5.9e-66 255.4 230 57.4
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 1.0e-65 254.6 256 55.1
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 2.9e-65 253.1 320 48.8
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 3.8e-65 252.7 256 54.7
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 1.9e-64 250.4 244 55.3
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 1.9e-64 250.4 253 53.8
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 4.2e-64 249.2 233 55.8
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 4.2e-64 249.2 317 48.3
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 9.3e-64 248.1 328 47.6
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 2.1e-63 246.9 253 53.4
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 2.1e-63 246.9 253 53.0
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 3.6e-63 246.1 226 56.6
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 3.6e-63 246.1 232 53.4
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 6.1e-63 245.4 244 54.5
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 1.3e-62 244.2 320 47.5
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 2.3e-62 243.4 307 46.3
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 3.0e-62 243.0 324 46.9
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 3.0e-62 243.0 304 46.1
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 6.7e-62 241.9 290 49.3
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 1.9e-61 240.4 324 46.6
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 3.3e-61 239.6 305 46.6
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 3.3e-61 239.6 317 47.3
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 4.3e-61 239.2 314 48.1
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 4.3e-61 239.2 230 54.3
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 3.7e-60 236.1 303 47.5
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 1.1e-59 234.6 287 46.7
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 1.1e-59 234.6 241 53.5
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 1.4e-59 234.2 229 54.1
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 2.4e-59 233.4 231 53.2
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 3.1e-59 233.0 318 48.1
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 4.1e-59 232.6 287 48.8
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 4.1e-59 232.6 320 45.9
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 1.2e-58 231.1 311 46.3
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 1.2e-58 231.1 229 55.0
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 1.2e-58 231.1 230 53.5
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 1.5e-58 230.7 230 52.2
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 1.5e-58 230.7 232 52.2
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 1.5e-58 230.7 230 53.5
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 1.5e-58 230.7 231 54.5
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 2.0e-58 230.3 308 47.1
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 2.0e-58 230.3 221 55.7
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 2.0e-58 230.3 244 53.3
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 2.6e-58 229.9 306 47.1
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 2.6e-58 229.9 257 49.4
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 3.4e-58 229.6 234 53.0
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 4.5e-58 229.2 205 58.0
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 4.5e-58 229.2 265 50.2
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.3e-57 227.6 229 55.0
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 1.7e-57 227.3 306 46.4
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 2.2e-57 226.9 273 47.6
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 2.2e-57 226.9 224 54.0
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 3.8e-57 226.1 229 52.4
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 5.0e-57 225.7 278 46.8
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 6.5e-57 225.3 317 44.8
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 8.5e-57 224.9 232 52.2
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 1.1e-56 224.6 328 43.9
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 1.9e-56 223.8 252 50.8
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 2.5e-56 223.4 320 42.8
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 2.5e-56 223.4 229 52.0
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 3.2e-56 223.0 230 53.0
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 4.2e-56 222.6 315 45.4
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 1.2e-55 221.1 295 46.1
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 1.2e-55 221.1 218 53.2
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 1.6e-55 220.7 317 44.2
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 4.6e-55 219.2 244 52.5
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 7.9e-55 218.4 264 48.1
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 1.0e-54 218.0 266 46.2
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 1.0e-54 218.0 233 50.6
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 1.4e-54 217.6 219 53.4
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 2.3e-54 216.9 324 43.8
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 2.3e-54 216.9 226 50.9
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 3.0e-54 216.5 321 43.9
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 5.1e-54 215.7 274 44.5
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 9.7e-53 211.5 319 42.0
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 1.3e-52 211.1 218 51.4
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 8.2e-52 208.4 218 51.8
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 2.4e-51 206.8 278 46.0
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 3.1e-51 206.5 224 49.1
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 4.1e-51 206.1 231 50.6
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 1.4e-48 197.6 230 47.8
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 3.6e-47 193.0 310 40.0
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 2.6e-45 186.8 194 51.0
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 2.2e-44 183.7 179 55.9
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 4.8e-44 182.6 195 53.3
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 1.1e-43 181.4 179 54.2
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 1.8e-43 180.6 153 60.8
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 4.1e-43 179.5 205 50.7
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 2.0e-42 177.2 170 55.3
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 1.0e-41 174.9 141 61.7
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 6.5e-41 172.2 178 55.1
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 1.5e-40 171.0 194 48.5
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 3.2e-40 169.9 131 61.8
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 5.5e-40 169.1 169 56.2
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 5.5e-40 169.1 232 42.7
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 2.7e-39 166.8 191 50.3
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 8.0e-39 165.2 202 49.5
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 3.0e-38 163.3 179 50.3
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 9.7e-37 158.3 303 35.0
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 4.5e-34 149.4 282 35.8
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 2.8e-28 130.2 138 52.2
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 1.8e-27 127.5 227 35.2
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 1.9e-24 117.5 218 35.3
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 3.2e-24 116.7 179 40.8
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 5.7e-21 105.9 113 52.2
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 1.2e-18 98.2 86 53.5
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 1.9e-16 90.9 206 31.6
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 1.9e-16 90.9 206 31.6
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 4.3e-16 89.7 107 50.5
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 1.0e-14 85.1 117 42.7
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 1.7e-12 77.8 150 29.3
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 2.0e-10 70.9 251 26.7
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 3.5e-10 70.1 180 29.4
SalBow1G6520 Salvia bowleyana HOM05D001890 ORTHO05D008163 7.3e-08 62.4 77 46.8
Lj3C241T8 Lonicera japonica HOM05D001890 ORTHO05D008163 8.0e-07 58.9 60 51.7


User provided reference genes

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