Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 1.8e-57 225.7 113 100.0
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 1.6e-10 69.7 55 70.9
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 1.8e-09 66.2 35 91.4
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 5.2e-09 64.7 55 67.3
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 1.2e-08 63.5 55 63.6
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 1.2e-08 63.5 39 79.5
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 1.2e-08 63.5 39 79.5
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 2.0e-08 62.8 55 60.0
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 2.6e-08 62.4 36 77.8
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 2.6e-08 62.4 55 65.5
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 2.6e-08 62.4 55 60.0
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 2.6e-08 62.4 55 60.0
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 2.6e-08 62.4 55 60.0
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 3.4e-08 62.0 55 63.6
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.4e-08 62.0 55 63.6
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.4e-08 62.0 55 63.6
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.4e-08 62.0 55 63.6
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.4e-08 62.0 55 63.6
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 3.4e-08 62.0 39 76.9
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 4.4e-08 61.6 55 60.0
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 5.8e-08 61.2 57 64.9
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 5.8e-08 61.2 55 63.6
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 5.8e-08 61.2 36 80.6
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 5.8e-08 61.2 55 61.8
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 7.5e-08 60.8 51 60.8
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 7.5e-08 60.8 55 58.2
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 7.5e-08 60.8 40 67.5
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 7.5e-08 60.8 55 60.0
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 7.5e-08 60.8 55 58.2
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 7.5e-08 60.8 36 77.8
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 7.5e-08 60.8 48 68.8
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 7.5e-08 60.8 55 56.4
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 9.9e-08 60.5 51 60.8
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 9.9e-08 60.5 55 61.8
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 9.9e-08 60.5 36 77.8
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.3e-07 60.1 36 75.0
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 1.3e-07 60.1 38 71.1
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 1.3e-07 60.1 38 73.7
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 1.3e-07 60.1 40 70.0
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 1.3e-07 60.1 36 75.0
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 1.3e-07 60.1 39 69.2
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 1.3e-07 60.1 72 54.2
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 1.3e-07 60.1 55 61.8
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 1.7e-07 59.7 38 68.4
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 1.7e-07 59.7 52 57.7
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 1.7e-07 59.7 36 75.0
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 1.7e-07 59.7 40 65.0
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 1.7e-07 59.7 36 75.0
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 2.2e-07 59.3 55 58.2
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 2.2e-07 59.3 38 68.4
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 2.2e-07 59.3 38 73.7
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 2.2e-07 59.3 55 56.4
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 2.2e-07 59.3 55 58.2
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 2.2e-07 59.3 56 64.3
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 2.9e-07 58.9 56 64.3
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 2.9e-07 58.9 56 51.8
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 3.7e-07 58.5 38 68.4
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 3.7e-07 58.5 38 71.1
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 3.7e-07 58.5 35 77.1
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 3.7e-07 58.5 55 58.2
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 3.7e-07 58.5 56 62.5
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 6.4e-07 57.8 40 65.0
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 6.4e-07 57.8 40 65.0
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 6.4e-07 57.8 36 72.2
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 8.3e-07 57.4 55 58.2
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 8.3e-07 57.4 44 59.1
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 1.1e-06 57.0 55 60.0
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 1.1e-06 57.0 48 62.5
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.4e-06 56.6 47 61.7
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 1.4e-06 56.6 38 68.4
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 1.4e-06 56.6 38 68.4
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 1.4e-06 56.6 56 58.9
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 1.4e-06 56.6 47 57.4
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 1.4e-06 56.6 55 54.5
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 1.9e-06 56.2 34 73.5
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 1.9e-06 56.2 55 60.0
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 1.9e-06 56.2 55 52.7
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 1.9e-06 56.2 37 67.6
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 1.9e-06 56.2 55 58.2
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 2.4e-06 55.8 36 69.4
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 2.4e-06 55.8 55 60.0
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 2.4e-06 55.8 55 60.0
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 2.4e-06 55.8 55 60.0
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 2.4e-06 55.8 55 60.0
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 2.4e-06 55.8 35 68.6
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 2.4e-06 55.8 54 53.7
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 3.2e-06 55.5 55 60.0
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 3.2e-06 55.5 35 68.6
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 3.2e-06 55.5 33 75.8
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 4.1e-06 55.1 55 60.0
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 4.1e-06 55.1 55 60.0
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 5.4e-06 54.7 38 65.8
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 5.4e-06 54.7 54 59.3
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 5.4e-06 54.7 36 69.4
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 9.2e-06 53.9 38 63.2
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 9.2e-06 53.9 55 56.4


User provided reference genes

Program Settings