Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 0.0e+00 1110.9 578 100.0
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 2.2e-244 849.0 566 78.4
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 4.1e-243 844.7 580 76.2
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 7.1e-211 737.6 571 68.0
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 8.4e-204 714.1 566 64.7
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 2.4e-203 712.6 563 65.0
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 1.8e-201 706.4 571 64.6
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 5.1e-201 704.9 570 64.0
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 8.7e-201 704.1 571 66.5
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 2.5e-200 702.6 570 63.9
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 1.6e-199 699.9 573 64.9
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 2.8e-199 699.1 571 64.4
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 1.1e-198 697.2 571 66.5
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 1.4e-198 696.8 569 62.9
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 2.0e-197 693.0 571 62.9
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 4.5e-197 691.8 574 64.8
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 2.9e-196 689.1 564 66.8
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 4.9e-196 688.3 573 63.5
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 2.4e-195 686.0 570 64.0
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 1.2e-194 683.7 569 62.6
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 6.7e-193 677.9 572 61.7
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 9.6e-192 674.1 567 63.1
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.3e-191 673.7 570 60.9
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 3.7e-191 672.2 570 62.1
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 1.1e-190 670.6 565 62.5
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 2.4e-190 669.5 568 61.3
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 3.1e-190 669.1 577 62.0
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 5.3e-190 668.3 608 61.0
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 2.0e-189 666.4 564 61.7
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.4e-189 665.6 570 60.4
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 4.5e-189 665.2 485 73.0
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 4.5e-189 665.2 564 62.2
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 1.3e-188 663.7 564 61.9
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 4.9e-188 661.8 565 60.7
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 1.4e-187 660.2 562 61.6
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 2.5e-187 659.4 562 62.3
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 5.5e-187 658.3 574 61.7
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 1.2e-186 657.1 565 61.2
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 1.2e-186 657.1 563 61.1
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 2.7e-186 656.0 566 62.4
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.6e-186 655.2 579 61.1
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 4.6e-186 655.2 565 61.8
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 7.9e-186 654.4 564 60.5
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.9e-186 654.4 579 61.0
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 1.8e-185 653.3 562 61.2
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 2.3e-185 652.9 563 61.3
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.1e-185 651.7 584 60.8
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.7e-184 648.3 581 60.4
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 4.8e-183 645.2 563 60.9
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.1e-182 642.5 571 59.4
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 1.5e-181 640.2 568 59.3
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 2.0e-181 639.8 564 59.9
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 3.4e-181 639.0 512 64.5
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 3.4e-181 639.0 604 59.8
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 5.9e-181 638.3 564 59.4
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 2.9e-180 636.0 569 59.4
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 5.0e-180 635.2 570 59.5
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 6.5e-180 634.8 564 59.6
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 3.2e-179 632.5 569 58.7
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 4.2e-179 632.1 564 59.0
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 5.5e-179 631.7 585 59.7
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 7.2e-179 631.3 564 59.4
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 2.7e-178 629.4 564 58.7
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 3.6e-178 629.0 568 59.2
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 4.6e-178 628.6 589 57.4
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 6.1e-178 628.2 577 57.9
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 7.9e-178 627.9 577 57.9
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 7.9e-178 627.9 577 57.9
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 1.8e-177 626.7 577 57.5
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 2.3e-177 626.3 572 59.1
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 3.9e-177 625.5 577 57.4
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 6.7e-177 624.8 568 59.7
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 3.3e-176 622.5 578 58.0
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 4.3e-176 622.1 564 58.0
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 4.3e-176 622.1 552 60.9
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 2.8e-175 619.4 582 57.6
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 3.7e-175 619.0 565 62.1
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 6.3e-175 618.2 568 58.5
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 8.2e-175 617.8 568 59.0
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 2.4e-174 616.3 601 56.2
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 3.4e-173 612.5 564 58.3
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 5.9e-173 611.7 519 63.0
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 3.8e-172 609.0 498 61.8
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 8.5e-172 607.8 565 58.2
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 1.9e-171 606.7 473 65.8
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 9.4e-171 604.4 572 58.2
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 1.2e-170 604.0 567 57.5
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 3.7e-167 592.4 580 56.0
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 3.7e-167 592.4 573 57.4
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 8.2e-167 591.3 505 61.6
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 1.2e-165 587.4 575 56.2
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 1.9e-163 580.1 595 55.0
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 7.4e-160 568.2 470 63.2
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 7.0e-158 561.6 503 58.4
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 5.0e-156 555.4 570 54.7
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 1.8e-153 547.0 527 57.3
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 2.0e-152 543.5 505 56.8
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 6.3e-151 538.5 464 61.4
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 8.2e-151 538.1 645 49.6
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 1.2e-149 534.3 568 52.8
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 2.5e-147 526.6 483 57.3
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 6.3e-143 511.9 573 50.8
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 1.1e-142 511.1 412 65.3
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 2.4e-142 510.0 349 75.6
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 9.1e-142 508.1 538 50.6
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.2e-138 497.7 583 51.8
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 2.8e-138 496.5 403 66.5
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 6.1e-138 495.4 514 53.1
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 2.4e-134 483.4 553 50.1
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.1e-134 482.6 349 68.5
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 3.3e-131 473.0 345 67.5
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 4.3e-115 419.5 494 48.6
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 2.3e-113 413.7 360 60.6
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 2.4e-110 403.7 243 83.1
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 5.6e-107 392.5 242 79.8
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 5.6e-107 392.5 242 79.8
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 4.4e-96 356.3 234 74.4
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.4e-94 351.3 279 62.4
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 9.6e-91 338.6 192 85.4
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 4.8e-90 336.3 434 47.0
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 8.1e-90 335.5 575 39.7
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 8.1e-90 335.5 416 48.6
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 1.9e-86 324.3 395 47.6
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 9.3e-86 322.0 410 46.8
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 9.0e-81 305.4 308 51.3
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 8.4e-79 298.9 590 34.4
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 3.2e-78 297.0 331 48.9
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 8.7e-76 288.9 159 87.4
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 4.5e-72 276.6 403 41.7
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 6.5e-71 272.7 374 45.7
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 4.2e-62 243.4 143 81.8
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 8.8e-60 235.7 143 83.2
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.7e-58 231.5 143 81.1
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 1.1e-57 228.8 180 67.2
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 1.3e-55 221.9 134 82.1
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.3e-55 221.9 128 87.5
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-50 204.5 557 30.2
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 2.4e-49 201.1 461 33.8
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 1.2e-45 188.7 505 29.5
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 7.0e-41 172.9 241 44.0
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 6.3e-34 149.8 88 84.1
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.0e-31 140.2 92 76.1
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 6.8e-28 129.8 165 45.5
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 1.2e-24 119.0 417 28.3
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 2.7e-24 117.9 210 39.5
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 6.6e-23 113.2 179 39.7
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 4.7e-21 107.1 132 47.7
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 3.4e-19 100.9 255 30.6
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 4.9e-18 97.1 254 30.3
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.3e-15 89.0 51 86.3
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 2.9e-15 87.8 94 53.2
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 5.0e-15 87.0 45 88.9
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.6e-13 82.0 129 42.6
Peaxi162Scf00351g00526 Petunia axillaris HOM05D004776 ORTHO05D005777 1.7e-07 62.0 319 26.6
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 8.6e-07 59.7 199 28.1


User provided reference genes

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