Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 7.0e-201 703.7 355 100.0
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 5.2e-196 687.6 355 98.3
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 8.4e-138 494.2 352 73.0
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 1.0e-135 487.3 358 71.5
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 1.9e-118 429.9 339 68.1
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 1.4e-113 413.7 328 65.2
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 2.1e-112 409.8 344 62.8
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 3.9e-111 405.6 342 63.7
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 3.9e-111 405.6 351 62.7
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 1.6e-109 400.2 354 61.9
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 2.2e-109 399.8 352 62.2
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 2.4e-108 396.4 348 61.5
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 1.0e-106 391.0 338 61.2
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 7.9e-104 381.3 342 60.2
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 5.1e-103 378.6 352 58.8
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 3.8e-98 362.5 363 55.6
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 4.2e-97 359.0 351 56.1
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 1.6e-96 357.1 347 54.5
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 3.6e-96 355.9 355 54.4
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 4.7e-96 355.5 345 55.9
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 6.1e-96 355.1 338 57.4
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 6.1e-96 355.1 338 57.4
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 1.8e-95 353.6 363 54.5
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 2.3e-95 353.2 337 55.5
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 6.7e-95 351.7 336 56.2
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 8.8e-95 351.3 361 53.5
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 1.1e-94 350.9 357 53.2
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 1.1e-94 350.9 352 54.3
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 1.5e-94 350.5 359 52.9
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 1.5e-94 350.5 341 55.7
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 1.5e-94 350.5 381 53.8
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 2.0e-94 350.1 376 56.1
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 2.0e-94 350.1 376 56.1
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 5.7e-94 348.6 356 55.6
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 1.7e-93 347.1 354 54.8
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 3.7e-93 345.9 338 54.4
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 6.3e-93 345.1 340 53.8
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 8.2e-93 344.7 362 55.5
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 8.2e-93 344.7 358 53.9
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 1.4e-92 344.0 352 57.1
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 1.8e-92 343.6 339 56.0
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 1.5e-91 340.5 354 55.1
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 2.6e-91 339.7 351 53.0
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 4.5e-91 339.0 340 53.2
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 5.9e-91 338.6 342 55.6
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 1.0e-90 337.8 354 50.8
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 1.3e-90 337.4 353 55.5
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 1.7e-90 337.0 340 56.8
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 1.7e-90 337.0 343 51.9
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 1.7e-90 337.0 353 53.0
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 2.2e-90 336.7 353 55.5
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 3.8e-90 335.9 341 56.6
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 3.8e-90 335.9 340 52.4
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 3.8e-90 335.9 366 50.0
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 8.5e-90 334.7 340 53.8
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 1.1e-89 334.3 343 56.6
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 1.1e-89 334.3 359 54.0
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 1.5e-89 334.0 361 54.0
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 2.5e-89 333.2 366 50.3
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 7.2e-89 331.6 355 52.1
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 6.1e-88 328.6 345 54.5
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 1.0e-87 327.8 341 52.2
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 1.8e-87 327.0 352 53.4
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 2.3e-87 326.6 342 54.1
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 3.0e-87 326.2 343 54.5
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 3.9e-87 325.9 371 51.5
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 5.2e-87 325.5 345 53.3
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 8.8e-87 324.7 363 51.5
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 8.8e-87 324.7 344 52.6
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 3.3e-86 322.8 353 51.6
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 3.3e-86 322.8 346 51.7
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 3.3e-86 322.8 346 51.7
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 3.3e-86 322.8 346 51.7
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 3.3e-86 322.8 346 51.7
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 3.3e-86 322.8 358 52.5
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 7.4e-86 321.6 353 51.3
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 7.4e-86 321.6 336 56.5
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 1.3e-85 320.9 346 50.3
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 1.7e-85 320.5 355 51.0
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 4.8e-85 318.9 353 51.6
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 1.4e-84 317.4 341 52.2
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 1.4e-84 317.4 346 51.2
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 2.4e-84 316.6 346 52.0
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 3.1e-84 316.2 352 49.7
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 4.1e-84 315.8 359 52.9
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 9.1e-84 314.7 318 56.0
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 5.9e-83 312.0 343 52.2
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 2.2e-82 310.1 339 53.4
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 5.0e-82 308.9 338 50.9
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 1.2e-80 304.3 275 58.9
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 1.3e-77 294.3 347 49.9
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 1.1e-76 291.2 349 48.1
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 1.8e-76 290.4 282 55.7
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 4.5e-75 285.8 332 46.7
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 7.7e-75 285.0 326 50.3
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 3.2e-73 279.6 370 45.1
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 9.4e-73 278.1 350 45.1
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 4.7e-72 275.8 344 46.2
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 2.9e-66 256.5 361 42.1
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 2.5e-65 253.4 339 42.2
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 6.8e-63 245.4 180 67.2
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 3.7e-61 239.6 339 40.4
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 9.2e-60 235.0 345 40.6
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 6.6e-58 228.8 219 54.3
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 9.8e-54 214.9 383 36.0
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 2.9e-53 213.4 166 62.0
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 2.9e-53 213.4 128 75.8
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 1.7e-50 204.1 194 53.1
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 3.6e-48 196.4 312 40.7
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 6.8e-47 192.2 128 67.2
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 5.8e-46 189.1 341 39.0
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 4.1e-44 183.0 380 33.7
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 2.1e-43 180.6 252 46.0
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 1.0e-42 178.3 314 39.2
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 5.2e-39 166.0 348 34.5
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 3.4e-38 163.3 329 35.6
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 7.8e-35 152.1 314 36.9
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 7.8e-35 152.1 353 30.6
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 3.3e-33 146.7 88 78.4
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 2.1e-32 144.1 217 43.3
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 2.4e-31 140.6 268 39.6
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 9.3e-28 128.6 343 27.7
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 2.3e-26 124.0 167 46.7
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 3.9e-26 123.2 144 48.6
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 7.6e-22 109.0 87 56.3
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 3.5e-19 100.1 62 75.8
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 1.1e-17 95.1 136 41.2
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 2.5e-17 94.0 91 56.0
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 1.6e-16 91.3 144 32.6
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 3.4e-14 83.6 72 56.9
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 9.3e-12 75.5 93 50.5
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 4.0e-07 60.1 65 50.8


User provided reference genes

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